BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4681.p (448 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777120.1| two component response regulator protein [He... 738 0.0 ref|YP_366911.1| response regulator receiver modulated metal dep... 396 e-108 ref|ZP_02361767.1| response regulator/HD domain protein [Burkhol... 391 e-106 ref|YP_441172.1| response regulator [Burkholderia thailandensis ... 389 e-106 ref|ZP_02386631.1| response regulator [Burkholderia thailandensi... 388 e-105 >ref|YP_003777120.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65212.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 448 Score = 738 bits (1904), Expect = 0.0, Method: Composition-based stats. Identities = 390/448 (87%), Positives = 430/448 (95%) Query: 1 MTAIQSQELQTLQQADPFALPPPCVLLVDDEQSILSALKRTFRPQGYRLLTATSAEAGLD 60 M+AI S E+ TLQQADPFALPPPCVLLVDDEQSILSALKRTFRPQGYRL+ ATSAEA L+ Sbjct: 1 MSAIHSHEIDTLQQADPFALPPPCVLLVDDEQSILSALKRTFRPQGYRLIMATSAEAALE 60 Query: 61 ILASADVDLVISDMRMPGMNGAQFLAQVRQRWPATMRILLTGYSEIGSTISAINDGGIHH 120 ++A+++VDLVISDMRMPGMNGAQFLA+VRQ+WP+TMRILLTGYSEIGSTISAINDGGI+H Sbjct: 61 MMAASEVDLVISDMRMPGMNGAQFLAKVRQQWPSTMRILLTGYSEIGSTISAINDGGINH 120 Query: 121 YLSKPWEDRELLMVVTHALEEQQLRKQKMALERKVREQNLQLADFNRQLERQVQARTEEL 180 YLSKPW+DRELL++V HALEEQQLRKQKMALERKVREQNLQLADFNRQLERQVQ+RTEEL Sbjct: 121 YLSKPWDDRELLLIVAHALEEQQLRKQKMALERKVREQNLQLADFNRQLERQVQSRTEEL 180 Query: 181 RQTVLFLENAQEEEQKAFLSMLHVFSDISELRAGLANGQSARVARWCEQLALRMGMNAHH 240 RQTV+FLE+AQEEEQK+FLSML VFSDISELRAGLA GQSARVARWCEQLALRMGM HH Sbjct: 181 RQTVMFLESAQEEEQKSFLSMLRVFSDISELRAGLATGQSARVARWCEQLALRMGMTTHH 240 Query: 241 AKEMMMAGMLHGIGKLDLSDDLVKKPIEKMSSDELQRFLWHPVKGQMLLTPIPTLAETGE 300 A++ MMAGMLHGIGKL+L D+LV+KPIEKM+SDE+QRFLWHPV+GQMLLTPIP+LAE+GE Sbjct: 241 ARDTMMAGMLHGIGKLELPDELVRKPIEKMNSDEVQRFLWHPVRGQMLLTPIPSLAESGE 300 Query: 301 IIRHQHERYDGRGVPESLSGDAIPLGSRILAVVRDFEGLCNGGITSHNVSPEKALSMLRT 360 IIRHQHERYDGRGVPESLSGDAIPLG+RILAVVRDFEGLCNGGITS N SPEKALSMLR Sbjct: 301 IIRHQHERYDGRGVPESLSGDAIPLGARILAVVRDFEGLCNGGITSLNASPEKALSMLRA 360 Query: 361 HAGHRYDPVVVNTFIAMMEEQRMALEQQTRLLSPAELRVGMKLAEDLRTRSGVLLLNKEH 420 HAGHRYDP+VV +FIAMMEEQ+MALEQQTRLL+ ELRVGMKLAEDLRT+SGVLLLNK+H Sbjct: 361 HAGHRYDPLVVESFIAMMEEQQMALEQQTRLLATQELRVGMKLAEDLRTKSGVLLLNKDH 420 Query: 421 VLDEAILARLRRFEQIDEMPLKARIVLH 448 VLD+A+LARLRRFEQ+DEMPLKARIVLH Sbjct: 421 VLDDALLARLRRFEQLDEMPLKARIVLH 448 >ref|YP_366911.1| response regulator receiver modulated metal dependent phosphohydrolase [Burkholderia sp. 383] gb|ABB06267.1| response regulator receiver modulated metal dependent phosphohydrolase [Burkholderia sp. 383] Length = 473 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 212/414 (51%), Positives = 293/414 (70%), Gaps = 4/414 (0%) Query: 23 PCVLLVDDEQSILSALKRTFRPQGYRLLTATSAEAGLDILASADVDLVISDMRMPGMNGA 82 P +LLVDDE S+LSAL+R FRP GY +LTA S EA L++LAS +VDL++SDMRMPGM+GA Sbjct: 30 PSILLVDDEPSVLSALRRVFRPAGYEILTAESGEAALEVLASTEVDLIVSDMRMPGMSGA 89 Query: 83 QFLAQVRQRWPATMRILLTGYSEIGSTISAINDGGIHHYLSKPWEDRELLMVVTHALEEQ 142 +FLA+ R +P TMRILLTGY+EI S + A+NDGG++ YL+KPW+D +LL+ + ALE++ Sbjct: 90 EFLARARSLYPDTMRILLTGYAEIASVVQAVNDGGVYRYLNKPWDDHDLLLTIEQALEQR 149 Query: 143 QLRKQKMALERKVREQNLQLADFNRQLERQVQARTEELRQTVLFLENAQEEEQKAFLSML 202 +LR++ L QN L FN +LE QV+ARTEEL QTV+FLE AQ + + +F +M+ Sbjct: 150 RLRREAARLAALTEAQNETLRRFNTELETQVRARTEELGQTVMFLEAAQRDLKSSFTAMV 209 Query: 203 HVFSDISELRAGLANGQSARVARWCEQLALRMGMNAHHAKEMMMAGMLHGIGKLDLSDDL 262 V + + ELR G A+G + RV +LAL GM+ HA+++ AG+LHGIGKL L D+L Sbjct: 210 QVCASMIELRCGSASGHAMRVGEIARRLALASGMSELHAQDVYFAGLLHGIGKLSLPDEL 269 Query: 263 VKKPIEKMSSDELQRFLWHPVKGQMLLTPIPTLAETGEIIRHQHERYDGRGVPESLSGDA 322 + KP+ KM+++E FL HP++ QM+LTP+ L + I+ HQ+ER++GRG P+ L+GD+ Sbjct: 270 LHKPLTKMTAEEHGLFLQHPLRAQMVLTPVAQLHKVASIVLHQYERFNGRGTPDGLAGDS 329 Query: 323 IPLGSRILAVVRDFEGLCNGGI-TSHNVSPEKALSMLRTHAGHRYDPVVVNTFIAMMEE- 380 IPLGSRILAV RDFEGL NG I H V E+AL +R+ AG RYDP +V+ I +M + Sbjct: 330 IPLGSRILAVARDFEGLRNGDIGVPHAV--EQALDAMRSQAGVRYDPKIVDGLIELMRDP 387 Query: 381 QRMALEQQTRLLSPAELRVGMKLAEDLRTRSGVLLLNKEHVLDEAILARLRRFE 434 + + + A+LR GM+LA+DLRT GVLL+ K V+ + +RRFE Sbjct: 388 ASLGIAASVAEIKSAQLREGMQLADDLRTHRGVLLMTKGSVMSAHQIELVRRFE 441 >ref|ZP_02361767.1| response regulator/HD domain protein [Burkholderia oklahomensis C6786] Length = 469 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 201/420 (47%), Positives = 299/420 (71%), Gaps = 1/420 (0%) Query: 23 PCVLLVDDEQSILSALKRTFRPQGYRLLTATSAEAGLDILASADVDLVISDMRMPGMNGA 82 P +L+VDDE SILSALKR R Y+++TA S A LD+LA+ +VDL++SDMRMPGM GA Sbjct: 31 PVILIVDDEPSILSALKRLLRTARYQVVTAESGAAALDVLAAGEVDLIVSDMRMPGMTGA 90 Query: 83 QFLAQVRQRWPATMRILLTGYSEIGSTISAINDGGIHHYLSKPWEDRELLMVVTHALEEQ 142 +FLA+ + R P TMRILLTGYSEI + +SAIN+GG++ YL+KPW+D +LL+ V ALE++ Sbjct: 91 EFLARAQTRHPDTMRILLTGYSEIDAVVSAINEGGVYRYLNKPWDDHDLLLTVKQALEQR 150 Query: 143 QLRKQKMALERKVREQNLQLADFNRQLERQVQARTEELRQTVLFLENAQEEEQKAFLSML 202 +LR++ L ++QN L + LE QV ARTEE+RQTVLFLE+AQ + ++ F++M+ Sbjct: 151 RLRQETARLFALTQKQNEALVALSTALEAQVHARTEEIRQTVLFLEDAQRDLKRNFMTMI 210 Query: 203 HVFSDISELRAGLANGQSARVARWCEQLALRMGMNAHHAKEMMMAGMLHGIGKLDLSDDL 262 V +++ ELR G+ G+S R+ +QLAL M+A A+++ AG+LHGIGKL L D+L Sbjct: 211 QVGANMIELRCGVMGGESRRIGELAKQLALAFDMSALQAQDLHFAGLLHGIGKLSLPDEL 270 Query: 263 VKKPIEKMSSDELQRFLWHPVKGQMLLTPIPTLAETGEIIRHQHERYDGRGVPESLSGDA 322 ++K I++M+++E + F HP++ QM+LTP+ L + IIRHQ+ER++GRG P+ L+GD Sbjct: 271 LRKSIDRMNAEESRLFHQHPLRAQMVLTPVAQLNQVAHIIRHQYERFNGRGTPDGLAGDD 330 Query: 323 IPLGSRILAVVRDFEGLCNGGITSHNVSPEKALSMLRTHAGHRYDPVVVNTFIAMMEE-Q 381 IPLG+RILAV RD+EGL GG+ + + E+A++++++ AG RYDP VV+ F+A+ ++ Sbjct: 331 IPLGARILAVARDYEGLQRGGVVNQRMQSEQAIALIKSQAGMRYDPHVVDRFVALAKDPA 390 Query: 382 RMALEQQTRLLSPAELRVGMKLAEDLRTRSGVLLLNKEHVLDEAILARLRRFEQIDEMPL 441 + ++ +L GM+LA+DLRT GVLL+ K V+ +A +RR+E + P Sbjct: 391 TLGCNTPYAQITGGQLLEGMRLADDLRTSRGVLLMTKGSVVSAHQVALVRRYEAQEATPF 450 >ref|YP_441172.1| response regulator [Burkholderia thailandensis E264] ref|ZP_02372799.1| response regulator [Burkholderia thailandensis TXDOH] ref|ZP_05588427.1| response regulator [Burkholderia thailandensis E264] gb|ABC38694.1| response regulator [Burkholderia thailandensis E264] Length = 484 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 200/420 (47%), Positives = 300/420 (71%), Gaps = 1/420 (0%) Query: 23 PCVLLVDDEQSILSALKRTFRPQGYRLLTATSAEAGLDILASADVDLVISDMRMPGMNGA 82 P +L+VDDE SILSALKR R Y+++TA S A LD+LA+ + DL+ISDMRMPGM GA Sbjct: 45 PVILIVDDEPSILSALKRLLRTARYQVVTAESGAAALDVLAAGEADLIISDMRMPGMTGA 104 Query: 83 QFLAQVRQRWPATMRILLTGYSEIGSTISAINDGGIHHYLSKPWEDRELLMVVTHALEEQ 142 +FLA+ + P TMRILLTGYSEI + +SAIN+GG++ YL+KPW+D +LL+ V ALE++ Sbjct: 105 EFLARAQALHPDTMRILLTGYSEIDAVVSAINEGGVYRYLNKPWDDHDLLLTVKQALEQR 164 Query: 143 QLRKQKMALERKVREQNLQLADFNRQLERQVQARTEELRQTVLFLENAQEEEQKAFLSML 202 +LR+Q L ++QN +L F+ +LE QV ARTEE+RQTV+FLE+AQ + ++ F++M+ Sbjct: 165 RLRQQTARLFALTQQQNAELLAFSTELEAQVHARTEEIRQTVMFLEDAQRDLKRNFMTMI 224 Query: 203 HVFSDISELRAGLANGQSARVARWCEQLALRMGMNAHHAKEMMMAGMLHGIGKLDLSDDL 262 V +++ ELR G+ G+S R+ ++LAL M+ A+++ AG+LHGIGKL L D+L Sbjct: 225 QVGANMIELRCGVMGGESRRIGELAKRLALASDMSELQAQDLHFAGLLHGIGKLSLPDEL 284 Query: 263 VKKPIEKMSSDELQRFLWHPVKGQMLLTPIPTLAETGEIIRHQHERYDGRGVPESLSGDA 322 ++K I++MS++E ++F HP++ QM+LTP+ L IIRHQ+ER++GRG P+ L+GD Sbjct: 285 LRKSIDRMSAEESRQFHQHPLRAQMVLTPVAQLNHVSHIIRHQYERFNGRGTPDGLAGDD 344 Query: 323 IPLGSRILAVVRDFEGLCNGGITSHNVSPEKALSMLRTHAGHRYDPVVVNTFIAMMEE-Q 381 IPLGSRILA+ RD+EGL GG+ + + PE+A++++++ AG RYDP +V+ F A++++ Sbjct: 345 IPLGSRILAIARDYEGLQRGGVVNQRMQPEQAIALIKSQAGLRYDPEIVDRFAALVKDLA 404 Query: 382 RMALEQQTRLLSPAELRVGMKLAEDLRTRSGVLLLNKEHVLDEAILARLRRFEQIDEMPL 441 + ++ +L GM+LA+DLRT GVLL+ K V+ +A +RR+E + P Sbjct: 405 TLGCNTPYARITGGQLLEGMRLADDLRTSRGVLLMTKGSVVSAHQVALVRRYEAQESTPF 464 >ref|ZP_02386631.1| response regulator [Burkholderia thailandensis Bt4] Length = 441 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 200/420 (47%), Positives = 300/420 (71%), Gaps = 1/420 (0%) Query: 23 PCVLLVDDEQSILSALKRTFRPQGYRLLTATSAEAGLDILASADVDLVISDMRMPGMNGA 82 P +L+VDDE SILSALKR R Y+++TA S A LD+LA+ + DL+ISDMRMPGM GA Sbjct: 2 PVILIVDDEPSILSALKRLLRTARYQVVTAESGAAALDVLAAGEADLIISDMRMPGMTGA 61 Query: 83 QFLAQVRQRWPATMRILLTGYSEIGSTISAINDGGIHHYLSKPWEDRELLMVVTHALEEQ 142 +FLA+ + P TMRILLTGYSEI + +SAIN+GG++ YL+KPW+D +LL+ V ALE++ Sbjct: 62 EFLARAQALHPDTMRILLTGYSEIDAVVSAINEGGVYRYLNKPWDDHDLLLTVKQALEQR 121 Query: 143 QLRKQKMALERKVREQNLQLADFNRQLERQVQARTEELRQTVLFLENAQEEEQKAFLSML 202 +LR+Q L ++QN +L F+ +LE QV ARTEE+RQTV+FLE+AQ + ++ F++M+ Sbjct: 122 RLRQQTARLFALTQQQNAELLAFSTELEAQVHARTEEIRQTVMFLEDAQRDLKRNFMTMI 181 Query: 203 HVFSDISELRAGLANGQSARVARWCEQLALRMGMNAHHAKEMMMAGMLHGIGKLDLSDDL 262 V +++ ELR G+ G+S R+ ++LAL M+ A+++ AG+LHGIGKL L D+L Sbjct: 182 QVGANMIELRCGVMGGESRRIGELAKRLALASDMSELQAQDLHFAGLLHGIGKLSLPDEL 241 Query: 263 VKKPIEKMSSDELQRFLWHPVKGQMLLTPIPTLAETGEIIRHQHERYDGRGVPESLSGDA 322 ++K I++MS++E ++F HP++ QM+LTP+ L IIRHQ+ER++GRG P+ L+GD Sbjct: 242 LRKSIDRMSAEESRQFHQHPLRAQMVLTPVAQLNHVSHIIRHQYERFNGRGTPDGLAGDD 301 Query: 323 IPLGSRILAVVRDFEGLCNGGITSHNVSPEKALSMLRTHAGHRYDPVVVNTFIAMMEE-Q 381 IPLGSRILA+ RD+EGL GG+ + + PE+A++++++ AG RYDP +V+ F A++++ Sbjct: 302 IPLGSRILAIARDYEGLQRGGVVNQRMQPEQAIALIKSQAGLRYDPEIVDRFAALVKDLA 361 Query: 382 RMALEQQTRLLSPAELRVGMKLAEDLRTRSGVLLLNKEHVLDEAILARLRRFEQIDEMPL 441 + ++ +L GM+LA+DLRT GVLL+ K V+ +A +RR+E + P Sbjct: 362 TLGCNTPYARITGGQLLEGMRLADDLRTSRGVLLMTKGSVVSAHQVALVRRYEAQESTPF 421