BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4680.p (454 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777119.1| two component transmembrane sensor histidine... 758 0.0 ref|ZP_08273714.1| PAS/PAC sensor signal transduction histidine ... 514 e-143 ref|YP_284197.1| PAS [Dechloromonas aromatica RCB] >gi|71846231|... 372 e-101 ref|YP_004513273.1| multi-sensor signal transduction histidine k... 362 7e-98 gb|EGW60732.1| multi-sensor signal transduction histidine kinase... 346 4e-93 >ref|YP_003777119.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ65211.1| two component transmembrane sensor histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 454 Score = 758 bits (1957), Expect = 0.0, Method: Composition-based stats. Identities = 372/454 (81%), Positives = 406/454 (89%) Query: 1 MGHSEALMANECASQRTHADDAPDTRALVKANARYRHIIGNTPAIIYSSVPSGDFQLTFV 60 MGH + ++ ++APD AL+KANARYRHIIGNTPAIIYSSVPSGDF+LTFV Sbjct: 1 MGHCDVFEVSQVCPLPAAKEEAPDFCALIKANARYRHIIGNTPAIIYSSVPSGDFRLTFV 60 Query: 61 SENATRLLGYEPSEMLDDPNFWFNHIHPDDTAAIFSSLAMLFVEDQKIYEYRFRTQDGSY 120 SENA+R+LGYEP EMLDDPNFWFNHIHPDDTA IFSSLAMLFVEDQKIYEYRFRT +GSY Sbjct: 61 SENASRVLGYEPCEMLDDPNFWFNHIHPDDTAQIFSSLAMLFVEDQKIYEYRFRTSNGSY 120 Query: 121 LWMHDTLRLIRDAEGTPLEVIGLMTDITGRKQMEDTLQCQAEEQRALIEQLKMAQAQLLQ 180 LWMHDTLRLIRD +GTP EVIGLMTDITGRK+MEDTLQ QAEEQR LIEQLKMAQAQL+Q Sbjct: 121 LWMHDTLRLIRDPDGTPQEVIGLMTDITGRKEMEDTLQRQAEEQRKLIEQLKMAQAQLMQ 180 Query: 181 SEKLASIGQLAAGVAHEINNPIGFVNANLNTLGNYVATLLEGIKLYQCVTTGKLPSSVAQ 240 SEKLASIGQLAAGVAHEINNPIGFV+ANLNTLGNYVATLLEGI+L+QC+ G LP+++AQ Sbjct: 181 SEKLASIGQLAAGVAHEINNPIGFVSANLNTLGNYVATLLEGIQLHQCLQGGALPAAMAQ 240 Query: 241 SELQAFEDRADLQFLSEDVTELLAESNEGLQRVKNIVQSLKDFSRTGESNWQMADLHRGL 300 +L++FE RADL FLSEDVTELLAESNEGLQRV+NIVQSLKDFSR GESNWQM DLHRGL Sbjct: 241 EQLRSFEARADLAFLSEDVTELLAESNEGLQRVRNIVQSLKDFSRIGESNWQMTDLHRGL 300 Query: 301 DSTLNIANNELKYKVTIVKQYGELPMIKCLASELNQVFMNLLVNAAQAIQERGSVTIRTE 360 DSTLNIANNELKYKV+IVKQYGELP++KCLASELNQVFMNLLVNAAQAI ERG+VTI T Sbjct: 301 DSTLNIANNELKYKVSIVKQYGELPLVKCLASELNQVFMNLLVNAAQAISERGTVTICTA 360 Query: 361 RCGQRVAVCISDTGHGIAPEHINRIFEPFFTTKPVGSGTGLGLSLSYGIIKKHGGDIHVS 420 R G +V+V ISDTGHGIAPE++NRIFEPFFTTKPVGSGTGLGLSLSYGI+KKHGGDI VS Sbjct: 361 RAGDKVSVSISDTGHGIAPENLNRIFEPFFTTKPVGSGTGLGLSLSYGIVKKHGGDIRVS 420 Query: 421 SEPGKGTTFRIELPIDPASAQPPSKASGEPGEAS 454 S PG GTTF IELPIDPAS S A+ GEAS Sbjct: 421 SAPGCGTTFTIELPIDPASVLAQSSATETSGEAS 454 >ref|ZP_08273714.1| PAS/PAC sensor signal transduction histidine kinase [Oxalobacteraceae bacterium IMCC9480] gb|EGF32792.1| PAS/PAC sensor signal transduction histidine kinase [Oxalobacteraceae bacterium IMCC9480] Length = 440 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 254/424 (59%), Positives = 326/424 (76%), Gaps = 2/424 (0%) Query: 18 HADDAPDTRA--LVKANARYRHIIGNTPAIIYSSVPSGDFQLTFVSENATRLLGYEPSEM 75 H D A A LV NAR ++I NTPAIIYSSVP+GDF++TFVS+NA R+LGYEP++M Sbjct: 15 HIDPAEHAGASTLVSTNARLEYLIANTPAIIYSSVPTGDFKMTFVSDNARRVLGYEPADM 74 Query: 76 LDDPNFWFNHIHPDDTAAIFSSLAMLFVEDQKIYEYRFRTQDGSYLWMHDTLRLIRDAEG 135 + DPNFWF+HIHP+D IFSSLA+LFVE Q+ YEYRF+T DG YLWMHDTLRL+RDA Sbjct: 75 VADPNFWFDHIHPEDIPTIFSSLALLFVEGQRSYEYRFKTSDGIYLWMHDTLRLMRDANN 134 Query: 136 TPLEVIGLMTDITGRKQMEDTLQCQAEEQRALIEQLKMAQAQLLQSEKLASIGQLAAGVA 195 PLEV+GL+++IT RK+ME+ LQ + +EQ+ +IE+++ QAQLLQSEK+ASIGQLAAG+A Sbjct: 135 EPLEVVGLLSNITERKKMEEALQKKGDEQQRMIEEMQQMQAQLLQSEKMASIGQLAAGIA 194 Query: 196 HEINNPIGFVNANLNTLGNYVATLLEGIKLYQCVTTGKLPSSVAQSELQAFEDRADLQFL 255 HEINNP+GFVN+NL +L YV TLL+ I+ Y S +S+L + A++ +L Sbjct: 195 HEINNPVGFVNSNLGSLRAYVDTLLDVIERYDAAVATTADMSALKSQLAQIQQEAEVDYL 254 Query: 256 SEDVTELLAESNEGLQRVKNIVQSLKDFSRTGESNWQMADLHRGLDSTLNIANNELKYKV 315 ED L++ES +GL+RV++IVQSLKDF+ GES+WQ+ADLH GLDSTL IA NE KYK Sbjct: 255 REDAVALVSESLDGLKRVRDIVQSLKDFAHVGESDWQVADLHHGLDSTLMIAANEFKYKA 314 Query: 316 TIVKQYGELPMIKCLASELNQVFMNLLVNAAQAIQERGSVTIRTERCGQRVAVCISDTGH 375 +I K YG+LP++ CLAS++NQVFMNL++NAAQAI ++G++TIRT V + I DTG Sbjct: 315 SIEKHYGKLPLVMCLASQINQVFMNLIINAAQAITDKGTITIRTGVSDDWVWIEIGDTGK 374 Query: 376 GIAPEHINRIFEPFFTTKPVGSGTGLGLSLSYGIIKKHGGDIHVSSEPGKGTTFRIELPI 435 GIA + INRIFEPFFTTKP+G GTGLGLSLSY I+ +H G I V S+ GT F + LPI Sbjct: 375 GIAADQINRIFEPFFTTKPIGQGTGLGLSLSYNIVSQHSGRIEVDSQVDLGTRFTVHLPI 434 Query: 436 DPAS 439 +P + Sbjct: 435 NPPA 438 >ref|YP_284197.1| PAS [Dechloromonas aromatica RCB] gb|AAZ45727.1| PAS protein [Dechloromonas aromatica RCB] Length = 1187 Score = 372 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 198/412 (48%), Positives = 266/412 (64%), Gaps = 6/412 (1%) Query: 37 HIIGNTPAIIYSSVPSGDFQLTFVSENATRLLGYEPSEMLDDPNFWFNHIHPDDTAAIFS 96 ++ +P I + +G + + FVS+N T GY ++++ + + +HPDD + + Sbjct: 776 QVVNASPVICFRWQATGGWPVVFVSDNVTNW-GYTVADLIAGNPAFADMVHPDDLSRVVE 834 Query: 97 SLAMLFVEDQKIY--EYRFRTQDGSYLWMHDTLRLIRDAEGTPLEVIGLMTDITGRKQME 154 + E + Y EYR T DG +W+ D +++R+A G G++TDIT R Sbjct: 835 EVTRYTAEGRTDYIQEYRLLTGDGRVIWISDRTQVLRNASGGAEFYDGVLTDITERHTQT 894 Query: 155 DTLQCQAEEQRALIEQLKMAQAQLLQSEKLASIGQLAAGVAHEINNPIGFVNANLNTLGN 214 + L QR L ++L+ A QLLQSEK+ASIGQLAAG+AHE+NNPIGFV++NL TL + Sbjct: 895 EELTTTLAAQRQLNKRLEEAHNQLLQSEKMASIGQLAAGIAHELNNPIGFVHSNLGTLES 954 Query: 215 YVATLLEGIKLYQCVTTGKLPSSVAQSELQAFEDRADLQFLSEDVTELLAESNEGLQRVK 274 Y+ L+E I Y + ++ + + D ++ D+ +LL+ES +GL RV+ Sbjct: 955 YLRDLMEIIDAYDKGLADDTDLAAQRTAIARLREERDFAYVRGDIIQLLSESKDGLSRVR 1014 Query: 275 NIVQSLKDFSRTGESNWQMADLHRGLDSTLNIANNELKYKVTIVKQYGELPMIKCLASEL 334 IVQ LK FS E WQ DLH+GLDSTLNI NELKYK +VK+YG++P I CL S+L Sbjct: 1015 KIVQDLKTFSHVSEQEWQWTDLHQGLDSTLNIVWNELKYKCQVVKEYGDIPKIHCLISQL 1074 Query: 335 NQVFMNLLVNAAQAIQERGSVTIRTERCGQRVAVC--ISDTGHGIAPEHINRIFEPFFTT 392 NQVFMNLLVNA AI+ RG++TIRT R G AVC ISDTG GIAPEH++RIFEPFFTT Sbjct: 1075 NQVFMNLLVNAGHAIETRGTITIRTRRQGDD-AVCIEISDTGKGIAPEHLSRIFEPFFTT 1133 Query: 393 KPVGSGTGLGLSLSYGIIKKHGGDIHVSSEPGKGTTFRIELPIDPASAQPPS 444 KPVG GTGLGLSLSYGII KH G I V S+ G G+TFRI LPI+ ++ P + Sbjct: 1134 KPVGKGTGLGLSLSYGIIDKHHGRIEVDSQLGVGSTFRIILPINQKNSPPET 1185 >ref|YP_004513273.1| multi-sensor signal transduction histidine kinase [Methylomonas methanica MC09] gb|AEG00774.1| multi-sensor signal transduction histidine kinase [Methylomonas methanica MC09] Length = 617 Score = 362 bits (929), Expect = 7e-98, Method: Composition-based stats. Identities = 188/410 (45%), Positives = 263/410 (64%), Gaps = 3/410 (0%) Query: 26 RALVKANARYRHIIGNTPAIIYSSVPSGDFQLTFVSENATRLLGYEPSEMLDDPNFWFNH 85 + L ++ R I+ + ++++S P G +L ++++ A + G + +DP W Sbjct: 202 KQLAESEKRLNDILNSLDSVVWSMEP-GTMKLLYLNKAANEVSGRPVEDFFNDPRLWLKI 260 Query: 86 IHPDDTAAIFSSLAMLFVEDQKIYEYRFRTQDGSYLWMHDTLRLIRDAEGTPLEVIGLMT 145 + P D + +SL L + YR R DG W+ + + D G+P+ + G+ Sbjct: 261 MDPSDRKQVEASLDNLTTNSIQKLIYRIRRPDGELRWLFHRMCAVCDDAGSPIRIDGITV 320 Query: 146 DITGRKQMEDTLQCQAEEQRALIEQLKMAQAQLLQSEKLASIGQLAAGVAHEINNPIGFV 205 DIT K ED L+ + +E ++ ++ ++ Q QL+QSEKL+SIGQLAAGVAHEINNPIG++ Sbjct: 321 DITQHKHAEDLLKQRNQELQSALDTIQEVQRQLVQSEKLSSIGQLAAGVAHEINNPIGYI 380 Query: 206 NANLNTLGNYVATLLEGIKLYQCVTTGKLPSSVAQSELQAFEDRADLQFLSEDVTELLAE 265 N+NL +L YV LL +++Y+ G ++Q F+ + DL FL DV +LL E Sbjct: 381 NSNLTSLKTYVEDLLALVEMYEKTEIG-CADGEQLRQIQDFKQQIDLVFLKTDVLDLLDE 439 Query: 266 SNEGLQRVKNIVQSLKDFSRTGESN-WQMADLHRGLDSTLNIANNELKYKVTIVKQYGEL 324 S+EG RVK IVQ LKDFS G ++ WQ A+LH LDSTLNI NNE+KYK +VK YG + Sbjct: 440 SHEGASRVKKIVQDLKDFSHAGGADEWQWANLHDCLDSTLNIVNNEVKYKARVVKAYGNI 499 Query: 325 PMIKCLASELNQVFMNLLVNAAQAIQERGSVTIRTERCGQRVAVCISDTGHGIAPEHINR 384 P CL +LNQVFMNLLVNAA AI++ G++T+RT + V +SDTG GI+PEH N+ Sbjct: 500 PRAWCLPHQLNQVFMNLLVNAAHAIEKEGTITVRTGTENGSLWVEVSDTGQGISPEHANK 559 Query: 385 IFEPFFTTKPVGSGTGLGLSLSYGIIKKHGGDIHVSSEPGKGTTFRIELP 434 IF+PFFTTKPVG GTGLGLS+SY I+KKH G+I V S G+GTTFR+ LP Sbjct: 560 IFDPFFTTKPVGKGTGLGLSVSYSIVKKHQGEIKVDSRIGEGTTFRVVLP 609 >gb|EGW60732.1| multi-sensor signal transduction histidine kinase [Dechlorosoma suillum PS] Length = 1013 Score = 346 bits (888), Expect = 4e-93, Method: Composition-based stats. Identities = 202/439 (46%), Positives = 272/439 (61%), Gaps = 29/439 (6%) Query: 27 ALVKANARYRHI---IGNTPAIIYSSVPSGDFQLTFVSENATRLLGYEPSEML------- 76 AL ++ ++R I IG+ AI V SG + V+ A R+ GY E+L Sbjct: 590 ALAESEDKFRTIYDTIGD--AIFVHDVASG--SILDVNGGACRMYGYSRKELLSLDVQGI 645 Query: 77 --DDPNFWFNHIHPDDTAAIFSSLAMLFVEDQKIYEYRFRTQDGSYLWMHDTLRLIRDAE 134 DDP F P A + + + E + +E+ R G W+ L++ R + Sbjct: 646 TADDPAF------PPQAARDY--MRRVQEEGPQSFEWMARGSSGRQFWVLVNLQIFRLSG 697 Query: 135 GTPLEVIGLMTDITGRKQMEDTLQCQAEEQRALIEQLKMAQAQLLQSEKLASIGQLAAGV 194 G V+ ++ DI GRK+ E LQ E +AL ++L AQ+QLLQSEK+ASIGQLAAGV Sbjct: 698 GQ--RVLAVVRDIDGRKRAEQELQQALAEAKALNQRLAEAQSQLLQSEKMASIGQLAAGV 755 Query: 195 AHEINNPIGFVNANLNTLGNYVATLLEGIKLYQCVTTGKLPSSVAQSELQAFEDRADLQF 254 AHE+NNPIGFV +NL TL +Y+ + I Y+ +G + + D F Sbjct: 756 AHEMNNPIGFVYSNLGTLDHYLREIFAIIAAYEAADSGPCRDCRQLESARQLKLEKDFDF 815 Query: 255 LSEDVTELLAESNEGLQRVKNIVQSLKDFSRTGESNWQMADLHRGLDSTLNIANNELKYK 314 L D+ +LLAES +GL+RV I + LKDFSR GE+ Q ADLH+GLDSTLNI NELKYK Sbjct: 816 LRSDIVQLLAESRDGLERVAKIARDLKDFSRAGEAESQWADLHQGLDSTLNIVWNELKYK 875 Query: 315 VTIVKQYGELPMIKCLASELNQVFMNLLVNAAQAIQERGSVTIRTERCGQRVAVCISDTG 374 T+ K+YGELP++ C S++NQVFMNLLVNAAQAI ++G + +RT R G V V +SD+G Sbjct: 876 CTVHKEYGELPLVWCEPSQINQVFMNLLVNAAQAIPKKGDIWLRTGRRGDEVFVAVSDSG 935 Query: 375 HGIAPEHINRIFEPFFTTKPVGSGTGLGLSLSYGIIKKHGGDIHVSSEPGKGTTFRIELP 434 GIAPE+++R+FEPFFTTKPVG GTGLGLSL+Y I++KH G + V SEPG+G+TF + LP Sbjct: 936 CGIAPEYLHRLFEPFFTTKPVGKGTGLGLSLAYSIVQKHQGRLEVESEPGRGSTFTVWLP 995 Query: 435 IDPASAQPPSKASGEPGEA 453 I+ A+P + E A Sbjct: 996 IE---ARPRPEEGTEAASA 1011