BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4679.p (523 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001098794.1| aerotaxis sensor receptor, senses cellular r... 446 e-123 ref|YP_546041.1| methyl-accepting chemotaxis sensory transducer ... 437 e-120 ref|YP_003773881.1| aerotaxis sensor receptor transmembrane prot... 434 e-119 ref|YP_001352217.1| aerotaxis sensor receptor (chemotaxis transd... 431 e-118 ref|YP_004293364.1| methyl-accepting chemotaxis sensory transduc... 426 e-117 >ref|YP_001098794.1| aerotaxis sensor receptor, senses cellular redox state or proton motive force [Herminiimonas arsenicoxydans] emb|CAL60665.1| Aerotaxis receptor [Herminiimonas arsenicoxydans] Length = 553 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 283/526 (53%), Positives = 350/526 (66%), Gaps = 24/526 (4%) Query: 1 MRLNLPVTQQEREIEAYASIVSKTDIKGRITYVNPTFIHISGFTEEELIGAPQNIVRHPD 60 MR NLPVT E + S+VSKTD KGRI+YVNP FI SGFTEEEL+G P N++RHPD Sbjct: 1 MRTNLPVTNAEFILRDEMSLVSKTDTKGRISYVNPAFIEASGFTEEELLGKPHNLIRHPD 60 Query: 61 MPELAFADLWSTLKAGLPWTGLVKNRCKNGDFYWVKANVTPIWERGKCTGYMSVRTKPTR 120 MPE AF D+W TL+ GLPWTG+VKNR KNGDFYWV ANVTP+ E K YMSVR+KP+R Sbjct: 61 MPEQAFGDMWQTLQQGLPWTGMVKNRRKNGDFYWVNANVTPVREEQKIVAYMSVRSKPSR 120 Query: 121 AEITAAEQAYKELKKESAR-IAVHRGEVVPTGLRGKLRQVSQLAFLNGQCAEHASSLPTL 179 ++ A + Y K +A+ + + RGEVV +GL GKL + + L + S+L L Sbjct: 121 EQVDATAKIYARFKAGTAKGLMIKRGEVVASGLFGKLASLKNIG-LGARIGISMSALIAL 179 Query: 180 ----------------------AATGVALGSLALLRMTLATRIFTPLRRAVAQARRVAGG 217 AAT V + L L I PL R +++ R +AGG Sbjct: 180 IMTLGFAAATAVENAAWSYWYGAATIVGAVIVILTWAGLYFSIMRPLDRLISKTRVIAGG 239 Query: 218 DLSAADLQARRDEMGALLQAMEQMRVNLVASVGDVRRSGMHIAQATGEIARGNMDLSSRT 277 D +A R D+MG L QA++QM VNL + +GD+R++ I AT EIA GNMDLS RT Sbjct: 240 DFTANFDVDRHDDMGQLQQALQQMNVNLRSVMGDIRQNVDSITIATHEIAEGNMDLSRRT 299 Query: 278 ESQASSLEETAASMEELASTVTQNSENARQANRLVEEALATTRDGEASIHHINDTMDAIH 337 E+QASSLEETA+SM++ ASTV QN++NA+QANRLV A G A + + TM+ I Sbjct: 300 EAQASSLEETASSMQQFASTVKQNADNAQQANRLVLSASEVAGKGGAVVEKVGATMNEIS 359 Query: 338 KSAEQIKQITGLIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQATK 397 SA++I I LIDGIAFQTNILALNAAVEAARAGEQG+GFAVVAGEVR+LAQRSA A + Sbjct: 360 ASAKRIVDIISLIDGIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRSLAQRSANAAR 419 Query: 398 EIKLLIDESSQRVGTGVKLAGDMRDTMGGIMRSVTQAATAVAEITAASGEQQTGIQQVNE 457 EIK LID+S +VG G +L GD TM GI+ SV + EIT AS EQ GI+QVN Sbjct: 420 EIKHLIDDSVDKVGVGNRLVGDAMATMEGIVNSVKSVTDIMNEITQASREQSDGIEQVNL 479 Query: 458 AVVLMDEVTQRNAALVEEAAAAAGSLEESTQQMIQAISVFNLDGMA 503 A+ MD+VTQ+NAALVEEAAAAA SL+E T+ + Q+IS+F G A Sbjct: 480 AISHMDQVTQQNAALVEEAAAAAASLKEQTEHLSQSISIFKTTGGA 525 >ref|YP_546041.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor [Methylobacillus flagellatus KT] gb|ABE50200.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor [Methylobacillus flagellatus KT] Length = 598 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 272/517 (52%), Positives = 343/517 (66%), Gaps = 18/517 (3%) Query: 1 MRLNLPVTQQEREIEAYASIVSKTDIKGRITYVNPTFIHISGFTEEELIGAPQNIVRHPD 60 MR+N+PVT E ++ SI+S TD++G+ITY+N FI +SGFTE+ELIG+P N+VRHPD Sbjct: 1 MRINMPVTNNEYFLQDGQSILSTTDLQGKITYINQDFIEVSGFTEDELIGSPHNLVRHPD 60 Query: 61 MPELAFADLWSTLKAGLPWTGLVKNRCKNGDFYWVKANVTPIWERGKCTGYMSVRTKPTR 120 MP AFAD+W+TLKAGLPWTG+VKNR KNGD+YWV AN TP+ + G GYMSVR KP+R Sbjct: 61 MPPEAFADMWATLKAGLPWTGMVKNRRKNGDYYWVLANATPMRQNGNVVGYMSVRVKPSR 120 Query: 121 AEITAAEQAYKELKKESAR-IAVHRGEVVPTGLRGKLRQ-----------VSQLAFLNGQ 168 ++ A Q Y L++ + +HRGE++ T ++R+ V+ +A L Sbjct: 121 QQVEQASQIYARLRENKHHGLKLHRGEILKTDFISRVRRAMQMTLKTQVAVTTIAILLAM 180 Query: 169 CAEHASSLPTLAATGVALGSLAL------LRMTLATRIFTPLRRAVAQARRVAGGDLSAA 222 A++ L + V G+L L ++L+ + PLR A A +A GDLS Sbjct: 181 VVVIAATFNGLDISFVVGGALVAMVAMLSLAVSLSNSVIKPLREATDIANALASGDLSHK 240 Query: 223 DLQARRDEMGALLQAMEQMRVNLVASVGDVRRSGMHIAQATGEIARGNMDLSSRTESQAS 282 ++ DE G LL+A+ QM VN+VA + D+R + I EIA GN DLS+RTESQAS Sbjct: 241 FSASKTDETGMLLRALNQMNVNIVAMITDIRTNMQRINTGVNEIANGNNDLSARTESQAS 300 Query: 283 SLEETAASMEELASTVTQNSENARQANRLVEEALATTRDGEASIHHINDTMDAIHKSAEQ 342 SLEETA+SMEELASTV QN++NARQAN+LV A + G I + D M I +SA + Sbjct: 301 SLEETASSMEELASTVKQNADNARQANQLVISASSVAARGGEVIGEVRDRMRLISESANK 360 Query: 343 IKQITGLIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQATKEIKLL 402 I I G+IDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRNLA RSA A KEIK L Sbjct: 361 ISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAHRSAAAAKEIKGL 420 Query: 403 IDESSQRVGTGVKLAGDMRDTMGGIMRSVTQAATAVAEITAASGEQQTGIQQVNEAVVLM 462 I +S +RV GV+ TM I+ SV +AEI+AAS EQ GI QVN AV M Sbjct: 421 ISDSVERVEAGVEFVDQAGTTMTEIVASVRNVTDIMAEISAASIEQSAGIDQVNHAVNDM 480 Query: 463 DEVTQRNAALVEEAAAAAGSLEESTQQMIQAISVFNL 499 DEVTQRNAALVEE+AAAA +L + Q+ +A SVF L Sbjct: 481 DEVTQRNAALVEESAAAADALRQDVLQLERAASVFKL 517 >ref|YP_003773881.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ61973.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 520 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 273/519 (52%), Positives = 345/519 (66%), Gaps = 20/519 (3%) Query: 1 MRLNLPVTQQEREIEAYASIVSKTDIKGRITYVNPTFIHISGFTEEELIGAPQNIVRHPD 60 MR+N+PVT QER + +IVSKTD+KG ITYVNP FI ISGF E EL+GAPQN++RHPD Sbjct: 1 MRMNMPVTGQERLLIDGKAIVSKTDLKGNITYVNPYFIEISGFEENELLGAPQNLIRHPD 60 Query: 61 MPELAFADLWSTLKAGLPWTGLVKNRCKNGDFYWVKANVTPIWERGKCTGYMSVRTKPTR 120 MP AFAD+W+T+K G PWTGLVKNR KNGD YWV+ANVTPI E G+ GYMSVRTKP R Sbjct: 61 MPAEAFADMWATIKGGTPWTGLVKNRSKNGDHYWVRANVTPIRENGQIVGYMSVRTKPER 120 Query: 121 AEITAAEQAYKELKKESAR-IAVHRGEVVPTGLRGKLRQVSQLAFLNGQCAEHASSLPTL 179 + AE+ Y +++ A+ IA+HRGEVV TGL G L ++S++ LN + + + Sbjct: 121 DAVAGAEKLYASIRRGQAKGIALHRGEVVRTGLAGWLGKLSRMQ-LNSRLNLSMGIMLAI 179 Query: 180 AATGVALGSLALLR------------------MTLATRIFTPLRRAVAQARRVAGGDLSA 221 V G AL + + L + PL +A+ + GGDLS Sbjct: 180 QLAVVVAGMAALHQWWISALAAAAALLSIVQWIALRNALIKPLHQALDITHAITGGDLSV 239 Query: 222 ADLQARRDEMGALLQAMEQMRVNLVASVGDVRRSGMHIAQATGEIARGNMDLSSRTESQA 281 R DE+G LL+++ QM VNL A +GDVR + I AT EIA GN+DLS RTE+QA Sbjct: 240 RIETTRHDELGRLLRSLRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSRRTEAQA 299 Query: 282 SSLEETAASMEELASTVTQNSENARQANRLVEEALATTRDGEASIHHINDTMDAIHKSAE 341 ++LEETA+SM ELASTV QN+++A QAN L A A G ++ TM+ I +S+ Sbjct: 300 ANLEETASSMHELASTVRQNADHAVQANDLAGTASAIAMRGGDAVASTGTTMNEISESSH 359 Query: 342 QIKQITGLIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQATKEIKL 401 +I I LID IAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSA A KEIK Sbjct: 360 KIVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKE 419 Query: 402 LIDESSQRVGTGVKLAGDMRDTMGGIMRSVTQAATAVAEITAASGEQQTGIQQVNEAVVL 461 LID S ++V G + TM I+ SV + + + EI A+ +Q GI QV+EA+ Sbjct: 420 LIDASVEKVDIGNRQVEQATSTMRDIVASVQRVSGIMGEIKEATQQQSAGINQVHEAITQ 479 Query: 462 MDEVTQRNAALVEEAAAAAGSLEESTQQMIQAISVFNLD 500 MD TQ+NA+LVEEAAAAAGSL+E T +++QAISVF + Sbjct: 480 MDASTQQNASLVEEAAAAAGSLQEQTVRLLQAISVFKFN 518 >ref|YP_001352217.1| aerotaxis sensor receptor (chemotaxis transducer) transmembrane protein [Janthinobacterium sp. Marseille] gb|ABR89860.1| aerotaxis sensor receptor (chemotaxis transducer) transmembrane protein [Janthinobacterium sp. Marseille] Length = 555 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 282/519 (54%), Positives = 345/519 (66%), Gaps = 22/519 (4%) Query: 1 MRLNLPVTQQEREIEAYASIVSKTDIKGRITYVNPTFIHISGFTEEELIGAPQNIVRHPD 60 MR NLPVT E ++ +S+VSKTD KGRITYVNP F+ SGF EEELIG P N++RHPD Sbjct: 1 MRTNLPVTSNEYFLQDGSSLVSKTDTKGRITYVNPAFMEASGFQEEELIGKPHNLIRHPD 60 Query: 61 MPELAFADLWSTLKAGLPWTGLVKNRCKNGDFYWVKANVTPIWERGKCTGYMSVRTKPTR 120 MPE AF D+W TLK GLPWTGLVKNR KNGDFYWV ANVTP+ E + +MSVR+KP R Sbjct: 61 MPEEAFGDMWQTLKEGLPWTGLVKNRRKNGDFYWVNANVTPVRENNEIVAFMSVRSKPNR 120 Query: 121 AEITAAEQAYKELKKESAR-IAVHRGEVVPTGLRGKLRQ--------------------V 159 ++ A+ Y K + A+ +A+ RG VV TG+ GKL + Sbjct: 121 EQVEGADAIYARFKADQAKGLAIRRGAVVSTGIFGKLAALRDIGLGSKIALGMMTLIALI 180 Query: 160 SQLAFLNGQCAEHASSLPTLA-ATGVALGSLALLRMTLATRIFTPLRRAVAQARRVAGGD 218 + L F+ E+A+ + A AT + LL +L + PLR +A+ R +AGGD Sbjct: 181 AALGFVATTAVENAARMGWYAGATAAGVCVALLLWASLHASVVRPLRTLIAETRVIAGGD 240 Query: 219 LSAADLQARRDEMGALLQAMEQMRVNLVASVGDVRRSGMHIAQATGEIARGNMDLSSRTE 278 L+ R D+MG L QA++QM VNL + +GD+R + I AT EIA GNMDLS RTE Sbjct: 241 LTFDFAVDRHDDMGQLQQALQQMNVNLRSVMGDIRTNVDSITIATREIAAGNMDLSGRTE 300 Query: 279 SQASSLEETAASMEELASTVTQNSENARQANRLVEEALATTRDGEASIHHINDTMDAIHK 338 SQASSLEETA+SME+ ASTV QN+++A QAN LV+ A G A + + TMD I Sbjct: 301 SQASSLEETASSMEQFASTVKQNADSASQANELVQSASEVAGKGGAVVEKVGATMDEISA 360 Query: 339 SAEQIKQITGLIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQATKE 398 SA++I I LIDGIAFQTNILALNAAVEAARAGEQG+GFAVVA EVR+LAQRSA A KE Sbjct: 361 SAKKIVDIISLIDGIAFQTNILALNAAVEAARAGEQGKGFAVVASEVRSLAQRSASAAKE 420 Query: 399 IKLLIDESSQRVGTGVKLAGDMRDTMGGIMRSVTQAATAVAEITAASGEQQTGIQQVNEA 458 IK LID+S ++V G +L D TM I+ SV + + EIT AS EQ GI QVN A Sbjct: 421 IKGLIDDSVEKVDAGNRLVSDAMTTMDDIVSSVQRVTGIMNEITVASREQSNGIDQVNLA 480 Query: 459 VVLMDEVTQRNAALVEEAAAAAGSLEESTQQMIQAISVF 497 + MDEVTQ+NAALVEEAAAAA SLEE T + Q+ISVF Sbjct: 481 ISQMDEVTQQNAALVEEAAAAAASLEEQTFHLTQSISVF 519 >ref|YP_004293364.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor [Nitrosomonas sp. AL212] gb|ADZ25202.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor [Nitrosomonas sp. AL212] Length = 573 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 272/535 (50%), Positives = 337/535 (62%), Gaps = 31/535 (5%) Query: 1 MRLNLPVTQQEREIEAYASIVSKTDIKGRITYVNPTFIHISGFTEEELIGAPQNIVRHPD 60 MR+NLPV+ E I+ I+S TD KGRITYVN TFI +SGF+ EELIG NIVRHPD Sbjct: 1 MRVNLPVSNTEYPIDDDTLILSTTDTKGRITYVNQTFIEVSGFSTEELIGKAHNIVRHPD 60 Query: 61 MPELAFADLWSTLKAGLPWTGLVKNRCKNGDFYWVKANVTPIWERGKCTGYMSVRTKPTR 120 MP AF DLW TL+AG PWTGLVKNR KNGDFYWV N TP+ E G GY+SVRTKP+R Sbjct: 61 MPPQAFEDLWRTLQAGKPWTGLVKNRRKNGDFYWVLGNATPLIENGSIVGYLSVRTKPSR 120 Query: 121 AEITAAEQAYKELKKESA-RIAVHRGEVVPTGLRGKLRQVSQLAFLNGQCAEHASSLPTL 179 I Y++ +A + + G +V T GK+ S L G+ S+PTL Sbjct: 121 QVIETIAPIYRQFINGTAGNLKIENGGIVRTDFIGKV--TSFLKMTLGKRIALYMSIPTL 178 Query: 180 ---------------AATGVALGSLALLRMTLATRI------------FTPLRRAVAQAR 212 AAT L L T T + PL +A+ A Sbjct: 179 LLLNAVGAGWWGLTQAATTSWLNDFILTTATCGTLLMCLAGFLIRQNTLEPLNKAIEIAN 238 Query: 213 RVAGGDLSAADLQARRDEMGALLQAMEQMRVNLVASVGDVRRSGMHIAQATGEIARGNMD 272 +A GDL + DE G L++++ QM +NL A+V DVR S + QA+ EIA GN+D Sbjct: 239 TLAAGDLQSKITNKFSDEFGVLIKSLTQMGINLRATVSDVRNSAESVRQASSEIASGNLD 298 Query: 273 LSSRTESQASSLEETAASMEELASTVTQNSENARQANRLVEEALATTRDGEASIHHINDT 332 LS RTE QASSLEETA+SMEEL STV QN++NARQA+ L +A G ++ + +T Sbjct: 299 LSQRTEEQASSLEETASSMEELTSTVKQNADNARQADHLSTDASNIALRGGQLMNDVVNT 358 Query: 333 MDAIHKSAEQIKQITGLIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRS 392 M I +S+ +I I +IDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRNLAQRS Sbjct: 359 MSLISESSNKIASIINVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRS 418 Query: 393 AQATKEIKLLIDESSQRVGTGVKLAGDMRDTMGGIMRSVTQAATAVAEITAASGEQQTGI 452 A A KEIK LID S ++V G +L + +TM I+ S+ A ++EITAAS EQ +GI Sbjct: 419 AAAAKEIKNLIDNSVEKVENGTRLVNEAGNTMEEIVTSIKHVAEIMSEITAASQEQSSGI 478 Query: 453 QQVNEAVVLMDEVTQRNAALVEEAAAAAGSLEESTQQMIQAISVFNL-DGMAATA 506 +QVN+AV MDEVTQ+NAALVEEAAA+A SLE + + AIS+F + M+ TA Sbjct: 479 EQVNQAVAQMDEVTQQNAALVEEAAASAESLENQAKDLTGAISIFKVGQAMSNTA 533