BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4676.p (320 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777117.1| chemotaxis signal transduction protein [Herb... 551 e-155 ref|YP_003775369.1| chemotaxis signal transduction protein [Herb... 390 e-106 ref|YP_003334077.1| response regulator receiver modulated CheW p... 372 e-101 ref|YP_002988072.1| response regulator receiver modulated CheW p... 371 e-100 ref|YP_003004925.1| response regulator receiver modulated CheW p... 370 e-100 >ref|YP_003777117.1| chemotaxis signal transduction protein [Herbaspirillum seropedicae SmR1] gb|ADJ65209.1| chemotaxis signal transduction protein [Herbaspirillum seropedicae SmR1] Length = 320 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 282/320 (88%), Positives = 304/320 (95%) Query: 1 MDAFQKEIDERTNLTSSNKFELLLFRLGNPEGTTDKPGELYGINVFKIREIVPMMDITAA 60 MD+FQKEIDERTNLTS+NKFELLLFRLG P+G+TDKPGELYGINVFKIREIVPMMDITAA Sbjct: 1 MDSFQKEIDERTNLTSTNKFELLLFRLGTPDGSTDKPGELYGINVFKIREIVPMMDITAA 60 Query: 61 AGMRSPMLGMVNIRGQVMSVVDLPAVAGCKPGHGLNILLITEFARHTQAFAVESVEEIVR 120 AGMRSPM+GMVNIRGQVMSVVDLPAVAGCK GHG NILLITEFARHTQAFAVESVEEIVR Sbjct: 61 AGMRSPMMGMVNIRGQVMSVVDLPAVAGCKAGHGNNILLITEFARHTQAFAVESVEEIVR 120 Query: 121 LDWSQVLPADSNASGNVVTSIARLDSALDGGRLVQVLDVEQILNMVSPVKEQIQPPTPGS 180 LDWSQVLPADS++ G++VTSIARLDS +DGGRLVQVLDVE ILN+VSPVKEQ+QP PG+ Sbjct: 121 LDWSQVLPADSHSPGSLVTSIARLDSEVDGGRLVQVLDVEHILNLVSPVKEQMQPAPPGA 180 Query: 181 NELKIKPGSVVLAADDSRMARALIEQCLNDLKLPYVMATDGLQAWKKLQELAREAEQEHK 240 ELK+KPG+VVLAADDSRMARALIEQCL DL LP++M TDGLQAWKKLQ+L++ A QE K Sbjct: 181 AELKLKPGAVVLAADDSRMARALIEQCLKDLNLPFIMETDGLQAWKKLQQLSQAAAQEGK 240 Query: 241 PLTDKVAMVLTDLEMPEMDGFTLTRKIKASDLYKQLPVVIHSSLTGAANEDHVRSVGANG 300 PLTDKVAMVLTDLEMPEMDGFTLTRKIKASD YKQLPVVIHSSLTG+ANEDHVRSVGANG Sbjct: 241 PLTDKVAMVLTDLEMPEMDGFTLTRKIKASDQYKQLPVVIHSSLTGSANEDHVRSVGANG 300 Query: 301 YVAKFSPPELAAMLRKVLPP 320 YVAKFSPPELAAMLR+VLPP Sbjct: 301 YVAKFSPPELAAMLRQVLPP 320 >ref|YP_003775369.1| chemotaxis signal transduction protein [Herbaspirillum seropedicae SmR1] gb|ADJ63461.1| chemotaxis signal transduction protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 205/320 (64%), Positives = 252/320 (78%), Gaps = 5/320 (1%) Query: 1 MDAFQKEIDERTNLTSSNKFELLLFRLG-NPEGTTDKPGELYGINVFKIREIVPMMDITA 59 MD FQKEIDERTNLT+SNKFELLLFRLG +P G + EL+GINVFKIREIVPM +T Sbjct: 1 MDNFQKEIDERTNLTASNKFELLLFRLGTDPHG---ERSELFGINVFKIREIVPMPPVTK 57 Query: 60 AAGMRSPMLGMVNIRGQVMSVVDLPAVAGCKPGHGLNILLITEFARHTQAFAVESVEEIV 119 AAG +SPMLGMVNIRGQ++SV+DLPAV GC P GLNILL+TE+AR TQAFAVESV+EIV Sbjct: 58 AAGTQSPMLGMVNIRGQIISVIDLPAVVGCVPKTGLNILLVTEYARSTQAFAVESVDEIV 117 Query: 120 RLDWSQVLPADSNASGNVVTSIARLDSALDGGRLVQVLDVEQILNMVSPVKEQIQPPT-P 178 RL+WSQVL A++++ G VTSIARLD+ D RL QVLDVEQIL+ + P ++ + Sbjct: 118 RLEWSQVLSAETSSGGAFVTSIARLDADKDTSRLAQVLDVEQILHEIMPTDRDLKMESLE 177 Query: 179 GSNELKIKPGSVVLAADDSRMARALIEQCLNDLKLPYVMATDGLQAWKKLQELAREAEQE 238 S I+PG+V +AADDS++AR+LIEQ L +++PY M G +AW+K+Q+LAREA E Sbjct: 178 KSASHGIRPGTVAIAADDSKVARSLIEQGLRAMEIPYEMHVTGKEAWEKIQKLAREARAE 237 Query: 239 HKPLTDKVAMVLTDLEMPEMDGFTLTRKIKASDLYKQLPVVIHSSLTGAANEDHVRSVGA 298 +P++DK++ VLTDLEMPEMDGFTLTR IK D K +PV+IHSSL+G+ANEDHVRSVG Sbjct: 238 GRPISDKISFVLTDLEMPEMDGFTLTRNIKREDYLKSIPVIIHSSLSGSANEDHVRSVGG 297 Query: 299 NGYVAKFSPPELAAMLRKVL 318 + YVAKF ELAA + VL Sbjct: 298 DAYVAKFEANELAATIYGVL 317 >ref|YP_003334077.1| response regulator receiver modulated CheW protein [Dickeya dadantii Ech586] gb|ACZ77372.1| response regulator receiver modulated CheW protein [Dickeya dadantii Ech586] Length = 322 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 190/318 (59%), Positives = 242/318 (76%), Gaps = 2/318 (0%) Query: 1 MDAFQKEIDERTNLTSSNKFELLLFRLGNPEGTTDKPGELYGINVFKIREIVPMMDITAA 60 MD FQKEI+ERTNLTSSNKFELLLFRLG+ G + P EL+GINVFK+REIVPM +T A Sbjct: 1 MDKFQKEIEERTNLTSSNKFELLLFRLGSATG--EGPSELFGINVFKLREIVPMPTLTKA 58 Query: 61 AGMRSPMLGMVNIRGQVMSVVDLPAVAGCKPGHGLNILLITEFARHTQAFAVESVEEIVR 120 AGM PMLGM+NIRGQ++ V+DLPAV GC G NILL+TE+AR TQAFAVESV++IVR Sbjct: 59 AGMTPPMLGMINIRGQIIPVIDLPAVVGCAASTGRNILLVTEYARSTQAFAVESVDDIVR 118 Query: 121 LDWSQVLPADSNASGNVVTSIARLDSALDGGRLVQVLDVEQILNMVSPVKEQIQPPTPGS 180 LDWSQV A++ S + +TSIARLDS RL VLDVEQIL+ + P +I+ + Sbjct: 119 LDWSQVNTAEAGVSNSYITSIARLDSDPASNRLALVLDVEQILHDIIPTAREIKIESVEE 178 Query: 181 NELKIKPGSVVLAADDSRMARALIEQCLNDLKLPYVMATDGLQAWKKLQELAREAEQEHK 240 +KPG+V + A+DS++AR ++E L + +PY+M GL+AW K++ +A EA+ E + Sbjct: 179 KTFHLKPGAVAIVAEDSKVARTMLETGLKVMNIPYIMHITGLEAWNKIKSMAEEAKAEGR 238 Query: 241 PLTDKVAMVLTDLEMPEMDGFTLTRKIKASDLYKQLPVVIHSSLTGAANEDHVRSVGANG 300 P++DK+A VLTDLEMPEMDGFTLTR IK + K +PV+IHSSL+G+ANEDHVR+VGA+ Sbjct: 239 PISDKIAFVLTDLEMPEMDGFTLTRNIKRDEALKHIPVIIHSSLSGSANEDHVRNVGADS 298 Query: 301 YVAKFSPPELAAMLRKVL 318 YVAKF ELAA + KV+ Sbjct: 299 YVAKFEINELAAAIHKVV 316 >ref|YP_002988072.1| response regulator receiver modulated CheW protein [Dickeya dadantii Ech703] gb|ACS86250.1| response regulator receiver modulated CheW protein [Dickeya dadantii Ech703] Length = 324 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 190/318 (59%), Positives = 243/318 (76%), Gaps = 2/318 (0%) Query: 1 MDAFQKEIDERTNLTSSNKFELLLFRLGNPEGTTDKPGELYGINVFKIREIVPMMDITAA 60 MD FQ+EI+ERTNLTSSNKFELLLFRLG+P G + ELYGINVFK+REIVPM ++T A Sbjct: 1 MDKFQREIEERTNLTSSNKFELLLFRLGSPTGKEES--ELYGINVFKLREIVPMPELTKA 58 Query: 61 AGMRSPMLGMVNIRGQVMSVVDLPAVAGCKPGHGLNILLITEFARHTQAFAVESVEEIVR 120 AGM PMLGM+NIRGQ++ V+DLP V G P GLNILL+TE+AR TQAFAVESV++IVR Sbjct: 59 AGMVPPMLGMINIRGQIIPVIDLPKVVGSVPNTGLNILLVTEYARSTQAFAVESVDDIVR 118 Query: 121 LDWSQVLPADSNASGNVVTSIARLDSALDGGRLVQVLDVEQILNMVSPVKEQIQPPTPGS 180 LDWSQV A++ + +TSIARLD+ + RL VLDVEQIL+ + P + +I+ Sbjct: 119 LDWSQVNTAEAGVGSSYITSIARLDNDPNTNRLALVLDVEQILHDIIPTEREIKIEKVED 178 Query: 181 NELKIKPGSVVLAADDSRMARALIEQCLNDLKLPYVMATDGLQAWKKLQELAREAEQEHK 240 IKPG+V + A+DS++AR ++EQ L + +PY+M GL+AW K++ +A EA+ E + Sbjct: 179 KTFDIKPGAVAIVAEDSKVARTMLEQGLKIMSIPYIMHVTGLEAWNKIKAMALEAQSEGR 238 Query: 241 PLTDKVAMVLTDLEMPEMDGFTLTRKIKASDLYKQLPVVIHSSLTGAANEDHVRSVGANG 300 P++DK+A VLTDLEMPEMDGFTLTR IK + K +PV+IHSSL+G+ANEDHVR+VGA+ Sbjct: 239 PISDKIAFVLTDLEMPEMDGFTLTRNIKREEFLKNVPVIIHSSLSGSANEDHVRNVGADS 298 Query: 301 YVAKFSPPELAAMLRKVL 318 YVAKF ELAA + VL Sbjct: 299 YVAKFEVNELAAAIHGVL 316 >ref|YP_003004925.1| response regulator receiver modulated CheW protein [Dickeya zeae Ech1591] gb|ACT07446.1| response regulator receiver modulated CheW protein [Dickeya zeae Ech1591] Length = 325 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 188/318 (59%), Positives = 242/318 (76%), Gaps = 2/318 (0%) Query: 1 MDAFQKEIDERTNLTSSNKFELLLFRLGNPEGTTDKPGELYGINVFKIREIVPMMDITAA 60 MD FQ+EI+ERTNLTSSNKFELLLFRLG+ G + P EL+GINVFK+REIVPM +T A Sbjct: 1 MDKFQREIEERTNLTSSNKFELLLFRLGSATG--EGPSELFGINVFKLREIVPMPTLTKA 58 Query: 61 AGMRSPMLGMVNIRGQVMSVVDLPAVAGCKPGHGLNILLITEFARHTQAFAVESVEEIVR 120 AGM PMLGM+NIRGQ++ V+DLPAV GC G NILL+TE+AR TQAFAVESV++IVR Sbjct: 59 AGMAPPMLGMINIRGQIIPVIDLPAVVGCAASTGRNILLVTEYARSTQAFAVESVDDIVR 118 Query: 121 LDWSQVLPADSNASGNVVTSIARLDSALDGGRLVQVLDVEQILNMVSPVKEQIQPPTPGS 180 LDWSQV A++ S +TSIARLDS RL VLDVEQIL+ + P + +I+ + Sbjct: 119 LDWSQVNTAEAGVSNTYITSIARLDSDPSSNRLALVLDVEQILHDIIPTEREIKIESVEE 178 Query: 181 NELKIKPGSVVLAADDSRMARALIEQCLNDLKLPYVMATDGLQAWKKLQELAREAEQEHK 240 +KPG+V + A+DS++AR ++E L + +PY+M GL+AW +++ +A+EA+ E + Sbjct: 179 KTFHLKPGAVAIVAEDSKVARNMLETGLKVMNIPYIMHITGLEAWNRIKLMAQEAQAEGR 238 Query: 241 PLTDKVAMVLTDLEMPEMDGFTLTRKIKASDLYKQLPVVIHSSLTGAANEDHVRSVGANG 300 P++DK+A VLTDLEMPEMDGFTLTR IK + K +PV+IHSSL+G ANEDHVR+VGA+ Sbjct: 239 PISDKIAFVLTDLEMPEMDGFTLTRNIKRDEALKHIPVIIHSSLSGTANEDHVRNVGADS 298 Query: 301 YVAKFSPPELAAMLRKVL 318 YVAKF ELAA + KV+ Sbjct: 299 YVAKFEINELAAAIHKVV 316