BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4675.p (604 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbasp... 669 0.0 ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I ... 490 e-136 ref|YP_003774566.1| methyl-accepting chemotaxis transducer trans... 424 e-116 ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herba... 422 e-115 ref|YP_004751579.1| methyl-accepting chemotaxis sensory transduc... 416 e-114 >ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] gb|ADJ65208.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 669 bits (1727), Expect = 0.0, Method: Composition-based stats. Identities = 444/584 (76%), Positives = 495/584 (84%), Gaps = 13/584 (2%) Query: 21 MKWFYDLKIANKLNAAFLVVLAFIIALGGFSIAQLAGVNKAASEVSSNWLPSINALSRIS 80 M WFY+LKIA+KLNAAFLVVL FII LGGFS +LA VNK++++++ NWLPSI+ALS++S Sbjct: 1 MNWFYNLKIAHKLNAAFLVVLVFIIGLGGFSSLELAAVNKSSTDIARNWLPSIDALSKMS 60 Query: 81 LALARSRSFDMQQLLTDDKKEELASRERASKQMEILLKEMSIYGSLVSEPREKELFLEIQ 140 LALARSRSFDMQQLLT DK+EE ASRERA KQM LLKE++ YG LVSEPREKEL+ EI+ Sbjct: 61 LALARSRSFDMQQLLTADKQEEKASRERADKQMATLLKEVARYGKLVSEPREKELYPEIE 120 Query: 141 HNVADYKSAHERMEQLFAQGKKQEAHAVLNTSSTPVYRKLQDQINELTEVNNKGAIASEQ 200 N+A YK AHERM LF Q +KQ AHA++N++STPVYRKLQ+QI EL+EVN+KGA S+ Sbjct: 121 RNIALYKEAHERMSALFEQDQKQAAHALMNSTSTPVYRKLQEQIGELSEVNSKGAALSDA 180 Query: 201 QASQVYQRAQMAIIGLVGSCIALAMLLSWWIARLVSRPLIQAVSIARQVAEGDLTARIPD 260 A +Y +A MAI+ LV +C+ LAM LSWWIARLV+RPL AV IARQVA GDLTA IP Sbjct: 181 DADHIYGQANMAILALVTTCVVLAMALSWWIARLVARPLANAVDIARQVAAGDLTADIP- 239 Query: 261 NTGRDETAQLMAALKQMNDNLLNIVQEVRTGTDTISTASAEIATGNMDLSSRTEQQAGAL 320 RDET QL+ AL+QMN NLLNIV+EVR GTDTI+TASAEIATGNMDLSSRTEQQAGAL Sbjct: 240 TAHRDETGQLLEALRQMNGNLLNIVREVRQGTDTITTASAEIATGNMDLSSRTEQQAGAL 299 Query: 321 EETASAMEELTSTVRQNSDNARQANQLAVSASEVAQAGGQVVGKVVHTMDAINESSRKIA 380 EETASAMEELTSTVRQNSDNARQANQLAV+ASEVAQAGG VVGKVV TM AIN+SSRKI Sbjct: 300 EETASAMEELTSTVRQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMSAINDSSRKIV 359 Query: 381 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAHEIKALID 440 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAHEIKALID Sbjct: 360 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAHEIKALID 419 Query: 441 DSVAKVDTGTKLVGEAGQTMNEVVASVKRVSDIVAEITAAGAEQSQGIEQINNAVVQMDE 500 DSVAKVDTG+KLV EAGQTMNEVVASVKRVSDIVAEITAAGAEQ+QGIEQINNAVVQMDE Sbjct: 420 DSVAKVDTGSKLVDEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGIEQINNAVVQMDE 479 Query: 501 NTQQNAALVEQAAAAAKALQEQATRLSQTVGVFRLDASDVPATVHAKHAKAAMATAAARD 560 NTQQNAALVEQAAAAAKALQEQA RLS+TV VFRLDA VP V ++AA RD Sbjct: 480 NTQQNAALVEQAAAAAKALQEQAGRLSETVSVFRLDAQHVPVVV----SRAAATAQPERD 535 Query: 561 ITPARPAVAAPRTPSIARSAPAARPATPAKSQHDSADNGDWEQF 604 ITPARPA+A R+ +AR A + A SA+ GDWEQF Sbjct: 536 ITPARPALAQSRSKVMARPAHSNTSA--------SAEQGDWEQF 571 >ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] gb|ADJ64222.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 340/585 (58%), Positives = 426/585 (72%), Gaps = 7/585 (1%) Query: 21 MKWFYDLKIANKLNAAFLVVLAFIIALGGFSIAQLAGVNKAASEVSSNWLPSINALSRIS 80 MKWFYDL+I+ KL FLVV+A + ALG FSI QL VN A++E+S+NWLPSI L+R+ Sbjct: 1 MKWFYDLRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTNWLPSIRTLARLQ 60 Query: 81 LALARSRSFDMQQLLTDDKKEELASRERASKQMEILLKEMSIYGSLVSEPREKELFLEIQ 140 LA++R RSF++Q +L D KE QM L + Y + +SEP EK ++ E++ Sbjct: 61 LAMSRLRSFELQHILAKDAKEYEEVERGMQVQMNNLKTAQAEYVTQISEPEEKAIYPEVE 120 Query: 141 HNVADYKSAHERMEQLFAQGKKQEAHAVLNTSSTPVYRKLQDQINELTEVNNKGAIASEQ 200 +A + S H+++ L QGK +EA + ST YR QI++L VN+KGA S + Sbjct: 121 KLIATFVSEHDKIIALSRQGKDEEARNLQRGESTKAYRTSLQQIDKLAAVNDKGADISNK 180 Query: 201 QASQVYQRAQMAIIGLVGSCIALAMLLSWWIARLVSRPLIQAVSIARQVAEGDLTARIPD 260 QA +Y +A++ II V +CI LAMLL+ W++RL++RPL +AVS+A++VA GDLT RI + Sbjct: 181 QADAIYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQRVAGGDLTTRI-E 239 Query: 261 NTGRDETAQLMAALKQMNDNLLNIVQEVRTGTDTISTASAEIATGNMDLSSRTEQQAGAL 320 G+DET QL+ ALK MND+L+ IV +VR GT TI+TAS EIA+GN+DLSSRTE+QA +L Sbjct: 240 PAGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSL 299 Query: 321 EETASAMEELTSTVRQNSDNARQANQLAVSASEVAQAGGQVVGKVVHTMDAINESSRKIA 380 EETASAMEELTSTV+QN+DNARQANQLAVSASEVA GG VV +VV TM +IN SSRKIA Sbjct: 300 EETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIA 359 Query: 381 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAHEIKALID 440 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AA EIK LI+ Sbjct: 360 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIE 419 Query: 441 DSVAKVDTGTKLVGEAGQTMNEVVASVKRVSDIVAEITAAGAEQSQGIEQINNAVVQMDE 500 SVA+VD G+KLV AG TM+EVV SV+RV+DIV EI++A EQS+GIEQ+N A+ QMDE Sbjct: 420 GSVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQMDE 479 Query: 501 NTQQNAALVEQAAAAAKALQEQATRLSQTVGVFRLDAS-DVPATVHAKHAKAAMATAAAR 559 TQQNAALVE+AAAAA++LQEQA L+QTVG F+L+ D PA+ A + TAA R Sbjct: 480 VTQQNAALVEEAAAAAQSLQEQAETLTQTVGFFKLEQQPDEPASRPPVRAASVARTAAVR 539 Query: 560 DITPARPAVAAPRTPSIARSAPAARPATPAKSQHDSADNGDWEQF 604 RPA + + A+ A +R A + D G WEQF Sbjct: 540 HAPATRPAATLAASAAPAKPASGSRLPGGA-----AEDGGSWEQF 579 >ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ62658.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 284/516 (55%), Positives = 377/516 (73%), Gaps = 1/516 (0%) Query: 21 MKWFYDLKIANKLNAAFLVVLAFIIALGGFSIAQLAGVNKAASEVSSNWLPSINALSRIS 80 M WFY+L IA KL +F VV+A + G F+I +L VNKA+ E+ S W+P+++A + Sbjct: 1 MIWFYNLNIAKKLALSFAVVIALTLLQGLFAIKELKQVNKASGEIVSKWMPTMDAARELQ 60 Query: 81 LALARSRSFDMQQLLTDDKKEELASRERASKQMEILLKEMSIYGSLVSEPREKELFLEIQ 140 +L R +++ + +E A+ + +++ L ++ +I+ +SEP+EKE + + Sbjct: 61 GSLPPLRLNELELVTAVTPQERAAANKAIKDRLDALTRQRAIFEQRMSEPQEKEQYAQFL 120 Query: 141 HNVADYKSAHERMEQLFAQGKKQEAHAVLNTSSTPVYRKLQDQINELTEVNNKGAIASEQ 200 N+ Y E++ ++ A + E A+ N S +YR + ++ + ++N G+ +++ Sbjct: 121 KNLTAYVKVDEQLAEMAANQQYDETRALFNGDSAKLYRSMVGNLDAIVKINTSGSAQADE 180 Query: 201 QASQVYQRAQMAIIGLVGSCIALAMLLSWWIARLVSRPLIQAVSIARQVAEGDLTARIPD 260 +AS V++ AQ I+GL+ + + +A LL++ +A VSRPL +AV IA++VA GDLT RI Sbjct: 181 EASTVFRGAQRWIVGLLAATVLIASLLAFLVATNVSRPLKEAVQIAQRVARGDLTLRIRP 240 Query: 261 NTGRDETAQLMAALKQMNDNLLNIVQEVRTGTDTISTASAEIATGNMDLSSRTEQQAGAL 320 GRDET LM AL+ MN++L +IV EVR GTDTI+TAS EIA GN+DLS+RTEQQAG+L Sbjct: 241 -AGRDETGALMEALRAMNESLRDIVSEVRQGTDTITTASHEIARGNLDLSNRTEQQAGSL 299 Query: 321 EETASAMEELTSTVRQNSDNARQANQLAVSASEVAQAGGQVVGKVVHTMDAINESSRKIA 380 EETASAMEELTSTV QN+DNARQANQLA +AS++A GG+VVG+VV TM+ I ESSR+IA Sbjct: 300 EETASAMEELTSTVTQNADNARQANQLAATASDIASQGGEVVGQVVQTMEGITESSRRIA 359 Query: 381 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAHEIKALID 440 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AA EIK LID Sbjct: 360 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELID 419 Query: 441 DSVAKVDTGTKLVGEAGQTMNEVVASVKRVSDIVAEITAAGAEQSQGIEQINNAVVQMDE 500 DSV KV G+ LV AG TM EVVASV+RV+D+VAEI+AA EQS GI ++N A+ QMDE Sbjct: 420 DSVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDE 479 Query: 501 NTQQNAALVEQAAAAAKALQEQATRLSQTVGVFRLD 536 TQQNAALVEQAAAAA +L+ QA+ L+ VG F+LD Sbjct: 480 TTQQNAALVEQAAAAADSLKGQASNLAAVVGKFKLD 515 >ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] gb|ADJ66081.1| methyl-accepting chemotaxis protein I, serine sensor receptor protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 422 bits (1084), Expect = e-115, Method: Composition-based stats. Identities = 293/515 (56%), Positives = 384/515 (74%), Gaps = 1/515 (0%) Query: 21 MKWFYDLKIANKLNAAFLVVLAFIIALGGFSIAQLAGVNKAASEVSSNWLPSINALSRIS 80 M WF +LKIA KL +F V+ + LG F+I +L VN+A++++++NWLP+I A I Sbjct: 1 MTWFNNLKIAKKLIVSFAAVIVLTVILGLFAIRELKAVNQASTDMATNWLPTIKAAQSIQ 60 Query: 81 LALARSRSFDMQQLLTDDKKEELASRERASKQMEILLKEMSIYGSLVSEPREKELFLEIQ 140 +L R R ++Q + E + + +++IL K+ + Y + +SE EK L+ + Sbjct: 61 ASLPRMRISELQMVTAATPAEREDALKAIKSRLDILAKQRAAYEAQISEAEEKVLYEKFS 120 Query: 141 HNVADYKSAHERMEQLFAQGKKQEAHAVLNTSSTPVYRKLQDQINELTEVNNKGAIASEQ 200 + A Y + + ++ A+GK++EA A+ S +R + + ++E+ +VN+ G+ S+ Sbjct: 121 KSFATYLEIDKELARISAEGKEEEARALFKGDSNKTFRSMIENMDEIIKVNDAGSKRSDD 180 Query: 201 QASQVYQRAQMAIIGLVGSCIALAMLLSWWIARLVSRPLIQAVSIARQVAEGDLTARIPD 260 A QVY+ A + IIGL+ + + +A+ L+ +AR VSRPL +AV++A +VA+GDLT I Sbjct: 181 MAEQVYRSATLWIIGLLAAIVVIALGLAVMVARAVSRPLNEAVAVAERVAQGDLTMDI-R 239 Query: 261 NTGRDETAQLMAALKQMNDNLLNIVQEVRTGTDTISTASAEIATGNMDLSSRTEQQAGAL 320 T DET LM +L+ MND+L IV EVRTGTDTI+TAS EIATGN+DLSSRTE+QAG+L Sbjct: 240 ATSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQAGSL 299 Query: 321 EETASAMEELTSTVRQNSDNARQANQLAVSASEVAQAGGQVVGKVVHTMDAINESSRKIA 380 EETASAMEELT+TV+QN+DNARQANQLA SAS++A GG VVG+VV TM+ I ESS +IA Sbjct: 300 EETASAMEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGITESSNRIA 359 Query: 381 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAHEIKALID 440 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAA EIK LID Sbjct: 360 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLID 419 Query: 441 DSVAKVDTGTKLVGEAGQTMNEVVASVKRVSDIVAEITAAGAEQSQGIEQINNAVVQMDE 500 DSV KV G++LV AG TM+EVVASV+RV+D+VAEI+AA EQS GIE+IN A+ QMDE Sbjct: 420 DSVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAITQMDE 479 Query: 501 NTQQNAALVEQAAAAAKALQEQATRLSQTVGVFRL 535 TQQNAALVE+AAAAA++LQ+QA RLSQ V VF+L Sbjct: 480 VTQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKL 514 >ref|YP_004751579.1| methyl-accepting chemotaxis sensory transducer [Collimonas fungivorans Ter331] gb|AEK60756.1| methyl-accepting chemotaxis sensory transducer [Collimonas fungivorans Ter331] Length = 635 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 279/516 (54%), Positives = 364/516 (70%), Gaps = 2/516 (0%) Query: 21 MKWFYDLKIANKLNAAFLVVLAFIIALGGFSIAQLAGVNKAASEVSSNWLPSINALSRIS 80 M WFY+LKIA KL +F ++L + LG SI QL VN +E++SNWLPS+ L + Sbjct: 96 MTWFYNLKIATKLLLSFALILMLTLVLGVASITQLGQVNATTNEINSNWLPSVRMLLTLK 155 Query: 81 LALARSRSFDMQQLLTDDKKEELASRERASKQMEILLKEMSIYGSLVSEPREKELFLEIQ 140 LA R+ +MQ ++++D + S + + K +S Y LVSE E+ ++ +++ Sbjct: 156 SNLALLRNVEMQHVMSNDAADMDKSAQFIGDIRGDVQKTLSEYAPLVSE-EERAVYDQLK 214 Query: 141 HNVADYKSAHERMEQLFAQGKKQEAHAVLNTSSTPVYRKLQDQINELTEVNNKGAIASEQ 200 + Y +++ + +K +A + S +L Q+ L ++N+ G+ AS + Sbjct: 215 DKIPRYLEMDKKIVDISRAFRKDDAIKEIRGDSLAAIVELDKQVERLVKINSDGSAASAK 274 Query: 201 QASQVYQRAQMAIIGLVGSCIALAMLLSWWIARLVSRPLIQAVSIARQVAEGDLTARIPD 260 +Y +A+ +IGL+ + + L L+ WIAR+V++PL AV +AR+VA GDLTA I + Sbjct: 275 DGEAIYNKARFWMIGLMIAMLLLGFALALWIARVVAQPLEFAVDVARRVAGGDLTADI-E 333 Query: 261 NTGRDETAQLMAALKQMNDNLLNIVQEVRTGTDTISTASAEIATGNMDLSSRTEQQAGAL 320 DET QLM ALK MN +L IV EVR+GTDTI+TAS +IA GN +LS RTEQQA +L Sbjct: 334 VRSSDETGQLMQALKDMNHSLQKIVGEVRSGTDTIATASGQIAAGNQNLSQRTEQQASSL 393 Query: 321 EETASAMEELTSTVRQNSDNARQANQLAVSASEVAQAGGQVVGKVVHTMDAINESSRKIA 380 EETA++ME+LTSTV+QN+DNA QANQLAVSASEVA GG VV +VV TM AIN SS+KI Sbjct: 394 EETAASMEQLTSTVKQNADNASQANQLAVSASEVALHGGTVVTQVVSTMGAINTSSKKIV 453 Query: 381 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAHEIKALID 440 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AA EIK LID Sbjct: 454 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSAAAAKEIKGLID 513 Query: 441 DSVAKVDTGTKLVGEAGQTMNEVVASVKRVSDIVAEITAAGAEQSQGIEQINNAVVQMDE 500 DSV KV GT+LV +AG TM E+VASV+RV+DI+ EITAA EQ+ GIEQIN A+ QMD+ Sbjct: 514 DSVEKVGLGTRLVDQAGSTMEEIVASVRRVTDIMGEITAASQEQTAGIEQINQAISQMDQ 573 Query: 501 NTQQNAALVEQAAAAAKALQEQATRLSQTVGVFRLD 536 TQQNAALVE+AAAAA +LQ+QA L+ VG F+L+ Sbjct: 574 VTQQNAALVEEAAAAAASLQDQAGALAGVVGAFKLE 609