BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4673.p         (131 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775243.1| histidine-containing phosphotransfer (HPt) d...    69   2e-10
ref|YP_001951784.1| Hpt sensor hybrid histidine kinase [Geobacte...    59   3e-07
ref|ZP_08275167.1| hypothetical protein IMCC9480_18 [Oxalobacter...    56   2e-06

>ref|YP_003775243.1| histidine-containing phosphotransfer (HPt) domain-containing
           protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63335.1| histidine-containing phosphotransfer (HPt) domain protein
           [Herbaspirillum seropedicae SmR1]
          Length = 122

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/107 (45%), Positives = 65/107 (60%), Gaps = 3/107 (2%)

Query: 17  YHHIDPSQLLEAVGGDTGTVASLARTFADSAPAIFARLEQAAREGNAERSRHESHSLKGM 76
           Y HI+P  LLEA+GGD      +  TFA SAPA FARLE A    +A + + E+HSLK M
Sbjct: 6   YQHINPEPLLEAMGGDATACRHMFGTFAKSAPANFARLEAAILADDAAQVKREAHSLKSM 65

Query: 77  SAMFQAQVLTMLLQQTEQAARN--GQTPRPEELAQLQASFALVLDEI 121
           +A+  A VLT LL+  E  +R    Q+ +P  LA+LQ+ FA    E+
Sbjct: 66  TALVGAGVLTELLKSIEVQSRAEPAQSAQP-RLAELQSLFAATAAEV 111


>ref|YP_001951784.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gb|ACD95264.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 929

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 1/108 (0%)

Query: 17  YHHIDPSQLLEAVGGDTGTVASLARTFADSAPAIFARLEQAAREGNAERSRHESHSLKGM 76
           Y   D   LL  +GG+   +      F +SA     +L QAA+EG+AE+ R ++H+LKG 
Sbjct: 820 YPVFDRQALLTRLGGNEALIQKFVSMFFESADEHMTQLRQAAKEGDAEQLRAKAHALKGS 879

Query: 77  SAMFQAQVLTMLLQQTEQAARN-GQTPRPEELAQLQASFALVLDEIGR 123
           +    A  L+M   + E AAR   QT +PE L++L+  F L     G+
Sbjct: 880 AGNVGACALSMAAAELETAARELQQTEQPELLSRLEEQFVLFEQATGK 927


>ref|ZP_08275167.1| hypothetical protein IMCC9480_18 [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF31362.1| hypothetical protein IMCC9480_18 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 132

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 7/109 (6%)

Query: 17  YHHIDPSQLLEAVGGDTGTVASLARTFADSAPAIFARLEQAAREGNAERSRHESHSLKGM 76
           Y  IDP  LL+  G D      L+  F   A  + ARLE A + G+++ +  ESHSLKG 
Sbjct: 6   YCAIDPHFLLQTAGDDLELFRELSAMFVTLAGPVHARLELAMQNGDSKATHFESHSLKGS 65

Query: 77  SAMFQAQVLTMLLQQTEQAARNGQT----PRPEELAQLQASFALVLDEI 121
           +++  A+ L+ LL + E  AR  +     P   EL +L   FALVLDE+
Sbjct: 66  TSLVGARGLSALLGEIEAHARRERNDLILPCLPELNRL---FALVLDEV 111