BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4672.p (555 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777114.1| two component sensor histidine kinase [Herba... 905 0.0 gb|EGW60352.1| integral membrane sensor signal transduction hist... 400 e-109 ref|YP_004752637.1| periplasmic sensor hybrid histidine kinase [... 377 e-102 ref|YP_001206636.1| sensor histidine kinase [Bradyrhizobium sp. ... 356 6e-96 ref|YP_781211.1| periplasmic sensor hybrid histidine kinase [Rho... 345 1e-92 >ref|YP_003777114.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ65206.1| two component sensor histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 556 Score = 905 bits (2340), Expect = 0.0, Method: Composition-based stats. Identities = 465/556 (83%), Positives = 512/556 (92%), Gaps = 1/556 (0%) Query: 1 MDDRKHPPLPLRFARIDLRLALGLFSLLLVCGLWLGAFKELNTSRENHLQDARRDAQSLS 60 MDDRK PLRFARIDLR+AL LFSLLL+CGLWLGAFKEL SR N+L DARRDAQSLS Sbjct: 1 MDDRKQQSFPLRFARIDLRVALSLFSLLLICGLWLGAFKELQNSRNNYLDDARRDAQSLS 60 Query: 61 RLFLEHAYRTIEAADQAALYLRYRYAERGQSLDLATEISNGLVARNVYNLFTIVDAKGDV 120 RLFLEHAYRTIEAADQAALYLRYRYAERG +L+LATEI NGLVARNVYNLF+IVDA+GDV Sbjct: 61 RLFLEHAYRTIEAADQAALYLRYRYAERGNALNLATEIDNGLVARNVYNLFSIVDAQGDV 120 Query: 121 VLSSKPFTPLNLADREHVQVHMQGGEDKLFISKPVLGRVSKKWSLQLTRRINRPDGGFGG 180 VLSSKPFTP+NLADREHVQVHMQGG+D+LFISKPVLGRVSKKWSLQ+TRRINRPDGGFGG Sbjct: 121 VLSSKPFTPVNLADREHVQVHMQGGQDQLFISKPVLGRVSKKWSLQITRRINRPDGGFGG 180 Query: 181 VIVVSIDPQYFTSLYHQIDVGHHGVITLVGADGTARVRRTGDMDAMGEQVNGGKVYAAML 240 V+VVS+DPQYFT LYHQIDVGHHGVITLVGADG ARVRRTGDMDAMGEQV GGKVYAAML Sbjct: 181 VVVVSMDPQYFTRLYHQIDVGHHGVITLVGADGVARVRRTGDMDAMGEQVAGGKVYAAML 240 Query: 241 AQGSGVIDAFSRVDGRERIYAFHKLRDYPLYASVGIDIEERLAPYYRERNRTLTLATLIT 300 AQGSG I+A S++DGRER+YAF KLRDYPL+A+VGID++ERLAPYYRER RTL LA L++ Sbjct: 241 AQGSGTIEAVSKIDGRERLYAFQKLRDYPLFAAVGIDLKERLAPYYRERERTLMLAALLS 300 Query: 301 LAVLIFNAVLIWMAGSLVRSRQEAMQASQAKSRFLSNMSHEFRTPLNGVLGYSDALREEL 360 +AVL+FNAVL+W+AGSLVRSR+EA+QA+QAKSRFLSNMSHEFRTPLNGVLGYSDALREEL Sbjct: 301 VAVLVFNAVLLWLAGSLVRSRREALQANQAKSRFLSNMSHEFRTPLNGVLGYSDALREEL 360 Query: 361 GESPLAQYATAIHDSGNRLLELVESILEVTALEDRRVAVHREPENIRELVSQAIARHYQA 420 GESPLAQYA AIHDSGNRLL+LV +ILEVT LEDRRVAVH +P NIRELV QAIARHY Sbjct: 361 GESPLAQYAVAIHDSGNRLLDLVNAILEVTELEDRRVAVHLDPANIRELVGQAIARHYPQ 420 Query: 421 AQTKGLQLECRISDDVPQIIVCDQRKVLRVLENLIGNAVRYTDAGRVLVEVDRSS-DQLA 479 AQ KGL LECRI +DVPQI+VCD+RK+ RVL+NLI NAVRYTD GRV+VEV+RS QL Sbjct: 421 AQAKGLPLECRIGEDVPQILVCDERKIQRVLDNLISNAVRYTDHGRVMVEVERSGPQQLT 480 Query: 480 IRIKDTGIGIPAGQLDTIFEKFTQADDSERRAKDGAGLGLTIAQRLVTLMGGQLMLQSKQ 539 +RIKDTGIGI A Q + IFEKFTQADDS RR+++GAGLGLTIAQRLV LMGGQL+LQS+Q Sbjct: 481 MRIKDTGIGIAASQQNDIFEKFTQADDSPRRSQEGAGLGLTIAQRLVMLMGGQLVLQSEQ 540 Query: 540 HQGSTFSFTLPLQEPK 555 HQGSTFSFTLPLQEPK Sbjct: 541 HQGSTFSFTLPLQEPK 556 >gb|EGW60352.1| integral membrane sensor signal transduction histidine kinase [Dechlorosoma suillum PS] Length = 558 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 213/530 (40%), Positives = 323/530 (60%), Gaps = 1/530 (0%) Query: 25 FSLLLVCGLWLGAFKELNTSRENHLQDARRDAQSLSRLFLEHAYRTIEAADQAALYLRYR 84 F+L L+ W +++ + +D +L+R EH RT+++ DQA ++L+Y+ Sbjct: 26 FALALLVLNWCAITFKIHNEESLEIASINQDNLNLARALEEHTLRTLKSVDQAVMFLKYQ 85 Query: 85 YAERGQSLDLATEISNGLVARNVYNLFTIVDAKGDVVLSSKP-FTPLNLADREHVQVHMQ 143 Y + +D+A + +G++ N++N I+D G +LS+ P L+L+DREH +VH+ Sbjct: 86 YERHPEKVDIAAYVRDGMIFSNLFNQLGIIDEHGKYILSNLPNHKVLDLSDREHFRVHIA 145 Query: 144 GGEDKLFISKPVLGRVSKKWSLQLTRRINRPDGGFGGVIVVSIDPQYFTSLYHQIDVGHH 203 +LF+SKPVLGR S KWSLQLTRRIN+PDG FGGV+VVS+DP YFT LY +++G H Sbjct: 146 RDTGQLFVSKPVLGRASGKWSLQLTRRINKPDGSFGGVVVVSLDPLYFTQLYADVNLGPH 205 Query: 204 GVITLVGADGTARVRRTGDMDAMGEQVNGGKVYAAMLAQGSGVIDAFSRVDGRERIYAFH 263 VITL+G DG R R++G + +G+ + + A + SG ++ S +D +R +A+ Sbjct: 206 SVITLLGLDGIVRARKSGKDEQVGQSLANSPILTAASKEASGTLELTSSIDKIDRFFAYR 265 Query: 264 KLRDYPLYASVGIDIEERLAPYYRERNRTLTLATLITLAVLIFNAVLIWMAGSLVRSRQE 323 L DYPL VG D E LA L L+TL VL F+ + + L +SR + Sbjct: 266 VLFDYPLMVIVGSDRNEALAETRHRAWSYLAFGGLVTLIVLAFSWGIGLLLARLEQSRAK 325 Query: 324 AMQASQAKSRFLSNMSHEFRTPLNGVLGYSDALREELGESPLAQYATAIHDSGNRLLELV 383 A +A++ KS FL++MSHE RTPLNG++GY++ L+E + L +YA IH SG+ LLELV Sbjct: 326 AEEANRLKSEFLASMSHELRTPLNGIIGYAELLQESTDDQDLREYAGTIHSSGSHLLELV 385 Query: 384 ESILEVTALEDRRVAVHREPENIRELVSQAIARHYQAAQTKGLQLECRISDDVPQIIVCD 443 SIL++ +E R + E ++ L+ + + H A KGL L I DVP+ ++CD Sbjct: 386 NSILDLAKIEAGRFELAPTLEPLQPLLQRVVQAHQPQADGKGLALNLEIDRDVPRQLLCD 445 Query: 444 QRKVLRVLENLIGNAVRYTDAGRVLVEVDRSSDQLAIRIKDTGIGIPAGQLDTIFEKFTQ 503 ++ +VL NL+ N V++TD G V V V R ++ ++D+G GI +TIF+KF Q Sbjct: 446 HLRLTQVLNNLVHNGVKFTDRGTVDVSVRRDGKRIRFAVRDSGPGIAPADQETIFDKFRQ 505 Query: 504 ADDSERRAKDGAGLGLTIAQRLVTLMGGQLMLQSKQHQGSTFSFTLPLQE 553 + R + G+GLGL ++++LV LMGG+L LQS+ +GS F FTLP+ E Sbjct: 506 GESFATRRQGGSGLGLALSRQLVELMGGRLTLQSEPGRGSEFYFTLPIGE 555 >ref|YP_004752637.1| periplasmic sensor hybrid histidine kinase [Collimonas fungivorans Ter331] gb|AEK61814.1| periplasmic sensor hybrid histidine kinase [Collimonas fungivorans Ter331] Length = 567 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 217/540 (40%), Positives = 317/540 (58%), Gaps = 5/540 (0%) Query: 15 RIDLRLALGLFSLLLVCGLWLGAFKELNTSRENHLQDARRDAQSLSRLFLEHAYRTIEAA 74 R D+RLA+ F+ L+ +W+ + + + L+ RDAQ+++R F E+ IE A Sbjct: 30 RSDIRLAILFFASALIACIWVVTLYDEASETQRELEKVGRDAQNVARAFDENISHVIEQA 89 Query: 75 DQAALYLRYRYAERGQSLDLATEISNGLVARNVYNLFTIVDAKGDVVLSSKPFTPLNLAD 134 D+A+ L+Y+Y G ++ L+ N+ N F I+D G V ++ + Sbjct: 90 DEASDLLKYQYERFGAKMNNPEYRDAWLMQGNLANRFFILDEHGKQVYANDDIVLNDELI 149 Query: 135 REHVQVHMQGGEDK---LFISKPVLGRVSKKWSLQLTRRINRPDGGFGGVIVVSIDPQYF 191 H+Q+H G D LF+ KPV RVS WS+Q +RR+NRPDG F GV+ VSI + Sbjct: 150 AGHMQLHR--GHDSGQLLFLVKPVRDRVSGDWSMQASRRLNRPDGSFSGVVGVSISNEAV 207 Query: 192 TSLYHQIDVGHHGVITLVGADGTARVRRTGDMDAMGEQVNGGKVYAAMLAQGSGVIDAFS 251 T YHQI+VG G I++VG +GT + R A+G +G +A M G + + Sbjct: 208 TRFYHQINVGQGGAISVVGDEGTIKAREPDGAKAIGMDFSGRPSFAVMKQHKQGYLTSNG 267 Query: 252 RVDGRERIYAFHKLRDYPLYASVGIDIEERLAPYYRERNRTLTLATLITLAVLIFNAVLI 311 VDG+ R YA+ L +YPL VGI +EE + P+Y R R LA T V++F ++ Sbjct: 268 VVDGKRRTYAYRHLENYPLMVLVGISVEEAMQPFYNNRFRGYVLAAFSTGVVVVFTVFIL 327 Query: 312 WMAGSLVRSRQEAMQASQAKSRFLSNMSHEFRTPLNGVLGYSDALREELGESPLAQYATA 371 +MA LV + + A A+QAKS+FL+NMSHE RTPLNG+LGY++ LRE+L + +A A Sbjct: 328 FMANGLVSTGRVATLANQAKSQFLANMSHELRTPLNGILGYAELLREDLVGTDEQHFAQA 387 Query: 372 IHDSGNRLLELVESILEVTALEDRRVAVHREPENIRELVSQAIARHYQAAQTKGLQLECR 431 IHDSG LL LV ++L++ + ++ V EN+RE++ + +A H A KG+ L Sbjct: 388 IHDSGTHLLLLVNTVLDLERIAAGKMEVFIATENLREVMQKIVASHASTAMRKGIALRLV 447 Query: 432 ISDDVPQIIVCDQRKVLRVLENLIGNAVRYTDAGRVLVEVDRSSDQLAIRIKDTGIGIPA 491 +S +P CD+ K++RVL NLI NA++YTD G V V V + L R+ DTG GIPA Sbjct: 448 LSPALPVEFACDRGKLIRVLNNLIHNALKYTDQGAVTVRVLQGDGVLIFRVVDTGEGIPA 507 Query: 492 GQLDTIFEKFTQADDSERRAKDGAGLGLTIAQRLVTLMGGQLMLQSKQHQGSTFSFTLPL 551 IFEKF Q D S+ RA+ G+GLGL +A+ LV MGG + ++S+ +GS F+FTLP+ Sbjct: 508 ELQRIIFEKFAQVDGSDMRAQAGSGLGLALAKELVKFMGGTIAVRSRVGKGSIFAFTLPI 567 >ref|YP_001206636.1| sensor histidine kinase [Bradyrhizobium sp. ORS 278] emb|CAL78419.1| putative sensor histidine kinase with a response regulator receiver domain [Bradyrhizobium sp. ORS 278] Length = 731 Score = 356 bits (913), Expect = 6e-96, Method: Composition-based stats. Identities = 208/540 (38%), Positives = 313/540 (57%), Gaps = 14/540 (2%) Query: 22 LGLFSLLLVCGLWLGAFKELNTSRENHLQDARRDAQSLSRLFLEHAYRTIEAADQAALYL 81 +GL ++ LV W G F + Q A ++ +L+R F E R+I AADQ LY+ Sbjct: 34 IGLSAIALV---WAGIFYTITEEHSRTEQSALKNGANLARAFEEQIIRSIRAADQTLLYV 90 Query: 82 RYRYAERGQSLDLATEISNGLVARNVYNLFTIVDAKGDVVLSSK---PFTPLNLADREHV 138 R YA+ Q+ D++ N + ++ +V K ++LSS ++L DREH Sbjct: 91 RDSYAKDPQNFDMSLWSKNSQFLSD-FSFQVVVIGKDGIMLSSNIDPKMRGVDLRDREHF 149 Query: 139 QVHMQGGEDKLFISKPVLGRVSKKWSLQLTRRINRPDGGFGGVIVVSIDPQYFTSLYHQI 198 +VH G +D LFISKP+ GRVS KWS+QLTRRI PDG FGGV+VVS+DP+Y +S Y+ + Sbjct: 150 RVHADGKDDFLFISKPIFGRVSNKWSIQLTRRIIMPDGSFGGVVVVSLDPEYLSSFYNSV 209 Query: 199 DVGHHGVITLVGADGTARVRRTGDMDAMGEQVNGGKVYAAMLAQGSGVIDAFSRVDGRER 258 D+G +G +TLVG DG R R + +G + G V AA+ + SG S +DG R Sbjct: 210 DLGKNGNVTLVGLDGIVRARASAGPTGVGSSLAGSPVMAAIQHRSSGSYTVKSLIDGIPR 269 Query: 259 IYAFHKLRDYPLYASVGIDIEERLAPYYRERNRTLTLATLITLAVLIFNAVLIWMAGSLV 318 IY+F +++D PL VG +E A + R R+R L + L+T+ + I ++ L Sbjct: 270 IYSFQRIKDQPLVVIVGQASDEIFAAFKRNRDRDLLVGGLLTVVIGIITILIARYQAGLA 329 Query: 319 RSRQEAMQASQAKSRFLSNMSHEFRTPLNGVLGYSDALREELGESPLAQYATAIHDSGNR 378 SR A ++A+S FL+ MSHE RTP+NGV+G +D L + AT + +S + Sbjct: 330 ASRDAAEAGTRARSEFLAMMSHEIRTPMNGVIGLADLLLSADLAPEQRKIATTLRESADY 389 Query: 379 LLELVESILEVTALEDRRVAVHREPENIRELVSQAIARHYQAAQTKGLQLECRISDDVPQ 438 LL+L+ +L+ + L+ R+ + ++ V+ A+ KGLQL I+ DVP Sbjct: 390 LLQLLNDVLDFSKLDADRLEIEHIEFDLHRSVTATAELLVSRAKEKGLQLTTSIAPDVPT 449 Query: 439 IIVCDQRKVLRVLENLIGNAVRYTDAGRVLVEVDRSSD------QLAIRIKDTGIGIPAG 492 +V D ++ +VL NL+GNA+++T+AG V V+V R+ D L + DTG+GIPA Sbjct: 450 YVVGDPARLRQVLFNLVGNALKFTEAGSVHVDV-RAEDLAGPNLTLVFSVADTGVGIPAE 508 Query: 493 QLDTIFEKFTQADDSERRAKDGAGLGLTIAQRLVTLMGGQLMLQSKQHQGSTFSFTLPLQ 552 + +F++F+Q D+S R G GLGL I +RLVT MGG + +QSK +GSTF+F++ +Q Sbjct: 509 AVGRLFKQFSQVDNSISRRFGGTGLGLAICKRLVTCMGGDIKVQSKVGEGSTFTFSIQVQ 568 >ref|YP_781211.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] gb|ABJ06231.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] Length = 729 Score = 345 bits (886), Expect = 1e-92, Method: Composition-based stats. Identities = 202/531 (38%), Positives = 308/531 (58%), Gaps = 10/531 (1%) Query: 33 LWLGAFKELNTSRENHLQDARRDAQSLSRLFLEHAYRTIEAADQAALYLRYRYAERGQSL 92 +W G ++ + + A ++ +L+R F E R+I+AADQ LY+R YA S Sbjct: 42 VWAGILSNISVDQTRTERAALQNNANLARAFEEQIVRSIKAADQTLLYVRDSYARAPASF 101 Query: 93 DLATEISNGLVARNVYNLFTIVDAKGDVVLSSK---PFTPLNLADREHVQVHMQGGEDKL 149 D++ N + ++ +V K ++LSS L+L DREH +VH G +D L Sbjct: 102 DMSLWSKNSQFLTD-FSFQVVVIGKDGIMLSSNIDPTMKGLDLRDREHFRVHADGDKDFL 160 Query: 150 FISKPVLGRVSKKWSLQLTRRINRPDGGFGGVIVVSIDPQYFTSLYHQIDVGHHGVITLV 209 FISKP+ GRVSKKWS+QLTRRI PDG FGGV+VVS+DP Y + Y +++G +G +T+V Sbjct: 161 FISKPIFGRVSKKWSVQLTRRIVMPDGSFGGVVVVSLDPNYLSRFYDSVEIGKNGSVTVV 220 Query: 210 GADGTARVRRTGDMDAMGEQVNGGKVYAAMLAQGSGVIDAFSRVDGRERIYAFHKLRDYP 269 G DG R R A+G + G++ + + +G A S VDG RI+++ K+ DYP Sbjct: 221 GFDGIIRARGASGPAAVGASLATGRLMSEFAQRPAGSFTAASAVDGVVRIFSYRKVGDYP 280 Query: 270 LYASVGIDIEERLAPYYRERNRTLTLATLITLAVLIFNAVLIWMAGSLVRSRQEAMQASQ 329 L SVG +E APY +R++ + +A L+TL +++ +A++I L +SR A ++ Sbjct: 281 LVVSVGQASDEVFAPYRSDRDKDIMVAALLTLVIIVVSALIIRYQTGLAKSRDAAEMGTR 340 Query: 330 AKSRFLSNMSHEFRTPLNGVLGYSDALREELGESPLAQYATAIHDSGNRLLELVESILEV 389 A+S FL+ MSHE RTP+NGV+G +D L + A + +S + LL+L+ +L+ Sbjct: 341 ARSEFLAMMSHEIRTPMNGVIGLADLLVAADLPGEQNKIAATLRESADYLLQLLNDVLDF 400 Query: 390 TALEDRRVAVHREPENIRELVSQAIARHYQAAQTKGLQLECRISDDVPQIIVCDQRKVLR 449 + L+ R+ + R + V I AQ KGL L RI +VP I D ++ + Sbjct: 401 SKLDANRLEIERIDFGLHRSVHATIDLLAPRAQEKGLSLTARIGPNVPDSITGDPARIRQ 460 Query: 450 VLENLIGNAVRYTDAGRVLVEVDR-----SSDQLAIRIKDTGIGIPAGQLDTIFEKFTQA 504 VL NL+GNA+++T AG V V V+ ++ +L ++ DTG+GIPA L +F +F+Q Sbjct: 461 VLFNLVGNAIKFTQAGSVEVVVEAEAAVGNAVRLVFKVIDTGVGIPAESLGLLFREFSQG 520 Query: 505 DDSERRAKDGAGLGLTIAQRLVTLMGGQLMLQSKQHQGSTFSFTLPLQEPK 555 D S R G GLGL I +RLV MGG++ +QS+ +GS F F++ L EP+ Sbjct: 521 DSSISRRFGGTGLGLAICKRLVACMGGEISVQSRVGKGSVFRFSV-LVEPQ 570