BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4671.p (213 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777113.1| two component response regulator protein [He... 368 e-100 ref|ZP_08273368.1| response regulator receiver protein [Oxalobac... 260 9e-68 ref|YP_004752641.1| excisionase/Xis, DNA-binding protein [Collim... 211 8e-53 ref|ZP_08272588.1| response regulator receiver domain protein (C... 183 2e-44 ref|YP_980694.1| response regulator receiver protein [Polaromona... 151 6e-35 >ref|YP_003777113.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65205.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 211 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 185/213 (86%), Positives = 196/213 (92%), Gaps = 2/213 (0%) Query: 1 MKTAKTTSSEVCTTQEAAHILGISVSSVQQLVEAGIIETWKTKGGHRRIPLAAVHAYKST 60 MKTAKT+S EVCTTQEAAHILGISVSSVQQLVEAGIIE WKTKGGHRRIPL AVHAYK+T Sbjct: 1 MKTAKTSSPEVCTTQEAAHILGISVSSVQQLVEAGIIEAWKTKGGHRRIPLTAVHAYKAT 60 Query: 61 PGSSSTGETAEHGRSGPAARPGNGRTAVLVIEDNRLQRELYAGALGSWGLPLDLVYCDNG 120 PGS+ G+ EHGRS A R GNGRTAVLVIEDN+LQRELYA AL SWGLPLDLVYC+NG Sbjct: 61 PGSA--GDAGEHGRSHVAQRAGNGRTAVLVIEDNQLQRELYAKALASWGLPLDLVYCENG 118 Query: 121 YKALLEIARSKPDVVLADIVMEGMDGYEVVKTILHDPELQDVSIAIVSSLDAEEMAMRGG 180 YKALLEIARSKPDVVLADIVMEGMDGYEVVKTIL+DP+L+DVSIAI SSLD +EMA RGG Sbjct: 119 YKALLEIARSKPDVVLADIVMEGMDGYEVVKTILNDPQLRDVSIAIASSLDKDEMAQRGG 178 Query: 181 IPAGVVFFPKPVNFDELRGYMRACCARRERETR 213 IPAGVVFFPKP+NFDELRGYMRACCARRERE R Sbjct: 179 IPAGVVFFPKPINFDELRGYMRACCARREREAR 211 >ref|ZP_08273368.1| response regulator receiver protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF33154.1| response regulator receiver protein [Oxalobacteraceae bacterium IMCC9480] Length = 208 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 131/210 (62%), Positives = 163/210 (77%), Gaps = 8/210 (3%) Query: 1 MKTAKTTSSEVCTTQEAAHILGISVSSVQQLVEAGIIETWKTKGGHRRIPLAAVHAYKST 60 MK ++E+CTTQ AA ILGISV+SVQQLVEAG+IE WKTKGGHRRIPLAA+ AYK+ Sbjct: 1 MKEGIMPAAEICTTQNAARILGISVTSVQQLVEAGVIEAWKTKGGHRRIPLAAIQAYKAA 60 Query: 61 PGSSSTGETAEHGRSGPAARPGNGRTAVLVIEDNRLQRELYAGALGSWGLPLDLVYCDNG 120 + S EHG G A PG + A+LVIEDN +QRE+Y + SW L L +C+NG Sbjct: 61 QTTVS-----EHG--GAHAVPGR-KPAILVIEDNLMQREIYQKQILSWNLDATLTFCENG 112 Query: 121 YKALLEIARSKPDVVLADIVMEGMDGYEVVKTILHDPELQDVSIAIVSSLDAEEMAMRGG 180 Y+AL+EIAR+KP+V+LADI+M+G+DGYEVV TIL P+L D+ IAI+SSL AEE+ RGG Sbjct: 113 YQALIEIARNKPNVLLADIMMDGIDGYEVVTTILGYPDLSDIHIAILSSLTAEELDERGG 172 Query: 181 IPAGVVFFPKPVNFDELRGYMRACCARRER 210 IP GVV+F KPVN+DELRGY+RACCA++ R Sbjct: 173 IPNGVVYFGKPVNYDELRGYLRACCAQQHR 202 >ref|YP_004752641.1| excisionase/Xis, DNA-binding protein [Collimonas fungivorans Ter331] gb|AEK61818.1| Excisionase/Xis, DNA-binding protein [Collimonas fungivorans Ter331] Length = 208 Score = 211 bits (536), Expect = 8e-53, Method: Composition-based stats. Identities = 105/213 (49%), Positives = 150/213 (70%), Gaps = 10/213 (4%) Query: 1 MKTAKTTSSEVCTTQEAAHILGISVSSVQQLVEAGIIETWKTKGGHRRIPLAAVHAYKST 60 M K S+V TTQEAA +LGISV+SVQQLVE G++ WKT+GGHRRIP A+ A K+ Sbjct: 1 MSAVKLNQSDV-TTQEAAKLLGISVTSVQQLVERGVLVAWKTQGGHRRIPREAIDALKAE 59 Query: 61 PGSSSTGETAEHGRSGPAARPGNGRTAVLVIEDNRLQRELYAGALGSWGLPLDLVYCDNG 120 T + GRS P++ + L++EDN LQR +Y + SW + L+ +C+NG Sbjct: 60 RSDLLT----DRGRSAPSST-----LSALIVEDNALQRMVYEKQIASWDIALETRFCENG 110 Query: 121 YKALLEIARSKPDVVLADIVMEGMDGYEVVKTILHDPELQDVSIAIVSSLDAEEMAMRGG 180 Y+AL+EIA+ K D++L DIVMEG+DGYE+VKT+L +P+L+ + IA++++L E++ RGG Sbjct: 111 YQALVEIAQRKYDILLLDIVMEGIDGYEIVKTVLANPDLRHIDIAVLTTLSREDLDARGG 170 Query: 181 IPAGVVFFPKPVNFDELRGYMRACCARRERETR 213 +P V+FF KP+ F+ELRG+MR C AR+ R+ R Sbjct: 171 LPDEVLFFQKPIVFEELRGFMRGCAARKARQAR 203 >ref|ZP_08272588.1| response regulator receiver domain protein (CheY-like) [Oxalobacteraceae bacterium IMCC9480] gb|EGF33941.1| response regulator receiver domain protein (CheY-like) [Oxalobacteraceae bacterium IMCC9480] Length = 186 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 90/189 (47%), Positives = 127/189 (67%), Gaps = 8/189 (4%) Query: 25 VSSVQQLVEAGIIETWKTKGGHRRIPLAAVHAYKSTPGSSSTGETAEHGRSGPAARPGNG 84 ++SVQQLVE G + WKT GGHRRIPL AVHAYK + ++TG+T + + A Sbjct: 1 MTSVQQLVETGALTAWKTTGGHRRIPLNAVHAYKLS--RATTGDTTDELPAQAA------ 52 Query: 85 RTAVLVIEDNRLQRELYAGALGSWGLPLDLVYCDNGYKALLEIARSKPDVVLADIVMEGM 144 +T++L+I+D + +R+ Y + SW L + +C NGY+AL+EI RSKPD++LAD+ M+ Sbjct: 53 KTSILIIQDGQQKRDFYEDQIASWNLNASMAFCSNGYQALMEITRSKPDILLADMAMDTA 112 Query: 145 DGYEVVKTILHDPELQDVSIAIVSSLDAEEMAMRGGIPAGVVFFPKPVNFDELRGYMRAC 204 G E++ TIL P+L D+ +A+VS+ + E AM + GVVFF PVN DELRGY+R C Sbjct: 113 AGQELINTILTYPDLSDMHMAVVSNHEQEPPAMWADLSDGVVFFSNPVNLDELRGYLRGC 172 Query: 205 CARRERETR 213 CA +ER R Sbjct: 173 CAGQERVRR 181 >ref|YP_980694.1| response regulator receiver protein [Polaromonas naphthalenivorans CJ2] gb|ABM35773.1| response regulator receiver protein [Polaromonas naphthalenivorans CJ2] Length = 213 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 81/199 (40%), Positives = 118/199 (59%), Gaps = 14/199 (7%) Query: 7 TSSEVCTTQEAAHILGISVSSVQQLVEAGIIETWKTKGGHRRIPLAAVHAY--KSTPGSS 64 +S + C T AA +LG+SV++VQ LVE G IE WKT GGHRRI L +++AY K +P S Sbjct: 18 SSEDYCGTSYAAKVLGLSVATVQSLVEKGEIEAWKTLGGHRRISLHSLNAYLTKYSPQLS 77 Query: 65 STGETAEHGRSGPAARPGNGRTAVLVIEDNRLQRELYAGALGSWGLPLDLVYCDNGYKAL 124 +H R VLV+ED+ R+LY W LP+D + + AL Sbjct: 78 RADLHPKH------------RLRVLVVEDDEAARDLYRCHFEEWDLPVDCTWMSSALDAL 125 Query: 125 LEIARSKPDVVLADIVMEGMDGYEVVKTILHDPELQDVSIAIVSSLDAEEMAMRGGIPAG 184 ++IA +PD+++AD+ M G+DG E+++TI + L D+ I ++S + E +A RGG+P Sbjct: 126 MDIASMRPDLLIADLSMPGVDGIEMLRTIKRNQHLADMQIVVISGMAVEAIAARGGLPPQ 185 Query: 185 VVFFPKPVNFDELRGYMRA 203 KPVNFD L+GY+ A Sbjct: 186 ARLVQKPVNFDWLQGYVTA 204