BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4670.p (524 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777112.1| deoxyribodipyrimidine photolyase [Herbaspiri... 835 0.0 ref|ZP_07674410.1| deoxyribodipyrimidine photolyase-like protein... 743 0.0 ref|YP_004388851.1| deoxyribodipyrimidine photolyase-like protei... 714 0.0 ref|YP_003278035.1| deoxyribodipyrimidine photolyase-like protei... 711 0.0 ref|ZP_03544265.1| deoxyribodipyrimidine photolyase-related prot... 704 0.0 >ref|YP_003777112.1| deoxyribodipyrimidine photolyase [Herbaspirillum seropedicae SmR1] gb|ADJ65204.1| deoxyribodipyrimidine photolyase protein [Herbaspirillum seropedicae SmR1] Length = 519 Score = 835 bits (2156), Expect = 0.0, Method: Composition-based stats. Identities = 418/520 (80%), Positives = 460/520 (88%), Gaps = 5/520 (0%) Query: 6 DTHATP-ASTLRLILGDQLNAQHSWFDHADPEVVYVLMEVRSETDYVLHHAQKILAIFAA 64 D A P A+TLRLILGDQLN +HSWFD D +VVY+LMEVRSETDYVLHHAQK+LA+FAA Sbjct: 4 DPSAPPRAATLRLILGDQLNPRHSWFDQCDDQVVYLLMEVRSETDYVLHHAQKVLALFAA 63 Query: 65 MRAFGEQLRAAGHRVRYIRLDDPSNRQSLVDNLDALAAHYQASRVEWQAPDEWRVDQALQ 124 MR F +L+A GHRVRYIRLDDPSNRQSLVDNL ALA HYQAS+V+WQAPDEWRVD+AL+ Sbjct: 64 MRDFAARLKAGGHRVRYIRLDDPSNRQSLVDNLSALARHYQASQVQWQAPDEWRVDEALR 123 Query: 125 QWGDTWAQAHQGQTAVVDSEHFLTARHELPRLFEGRKQWLMEHFYRQMRRRFELLLDADG 184 QW AQA QT++ DSEHFLT RHELPRLF GRKQWLMEHFYRQMRRRFELLL+ADG Sbjct: 124 QW----AQAQPLQTSMADSEHFLTDRHELPRLFSGRKQWLMEHFYRQMRRRFELLLEADG 179 Query: 185 KPEGGQWNFDHDNRKRWPGNPPEPRDWRQPHDHGALWEMLQAQGVRSFGEPQATQLRWPL 244 P GGQWNFDHDNRKRWPG P EP DWRQPHDH ALWEMLQA V +FG+PQA+QLRWPL Sbjct: 180 SPTGGQWNFDHDNRKRWPGTPAEPADWRQPHDHSALWEMLQACAVPTFGDPQASQLRWPL 239 Query: 245 DRTEALQHLDHFITTVLPHFGDYEDAMSSKARRLFHSLLSFALNVKMLHPLEVVRRAEEA 304 +R EAL HL+HFIT LP FGD+EDAMSS+A+RLFHSLLSFALNVKMLHPLEVVRRAEEA Sbjct: 240 NREEALAHLEHFITHALPCFGDFEDAMSSRAQRLFHSLLSFALNVKMLHPLEVVRRAEEA 299 Query: 305 WREGKAPLAAVEGFIRQIIGWREYVRGIYWSQMPGYDERNALAHRLPLPAWFWTGQTRMN 364 +REG+APLAAVEGF+RQIIGWREYVRGIYWSQMPGY++RN L H LPLPAWFWTGQTRM Sbjct: 300 YREGQAPLAAVEGFVRQIIGWREYVRGIYWSQMPGYEDRNVLDHGLPLPAWFWTGQTRMR 359 Query: 365 CLRHAIGQSLETAHAHHIQRLMVIGNFALLAGLDPKELHHWYLGIYIDAFEWVELPNTLG 424 CL+ AIGQSL++AHAHHIQRLMVIGNFALLAGLDPK LH WYLG+YIDAFEWVELPNTLG Sbjct: 360 CLQQAIGQSLQSAHAHHIQRLMVIGNFALLAGLDPKALHQWYLGVYIDAFEWVELPNTLG 419 Query: 425 MSQWADGGIIATKPYVSSAAYIGRMSDYCQGCAYDPKQKTSADACPFNALYWDFFLRHQS 484 MSQWADGGIIATKPYVSSAAYIGRMSDYCQGCAYDP+Q+ S DACP+NALYWDFFLRHQ Sbjct: 420 MSQWADGGIIATKPYVSSAAYIGRMSDYCQGCAYDPRQRHSEDACPYNALYWDFFLRHQE 479 Query: 485 TFGNNPRMGMAYQQIKKMQPDDVQALQQRADDLRSQLDTL 524 FG N RMGMAYQQ++KM ++ L++RA LR +LD L Sbjct: 480 RFGKNARMGMAYQQLRKMDTQELARLRERAAHLRERLDQL 519 >ref|ZP_07674410.1| deoxyribodipyrimidine photolyase-like protein [Ralstonia sp. 5_7_47FAA] gb|EFP67230.1| deoxyribodipyrimidine photolyase-like protein [Ralstonia sp. 5_7_47FAA] Length = 513 Score = 743 bits (1917), Expect = 0.0, Method: Composition-based stats. Identities = 362/513 (70%), Positives = 419/513 (81%), Gaps = 4/513 (0%) Query: 12 ASTLRLILGDQLNAQHSWFDHADPEVVYVLMEVRSETDYVLHHAQKILAIFAAMRAFGEQ 71 A LRL+LGDQLN QHSWF AD +VVYVLMEVR ETDYVLHHAQKILAIFAAMR F Sbjct: 5 AKILRLVLGDQLNPQHSWFADADADVVYVLMEVRQETDYVLHHAQKILAIFAAMRDFARG 64 Query: 72 LRAAGHRVRYIRLDDPSNRQSLVDNLDALAAHYQASRVEWQAPDEWRVDQALQQWGDTWA 131 LRAAGHRVRY+ +DD SNRQS+ +NL ALA HY A RVEWQ+PDEWR+D+ L++W A Sbjct: 65 LRAAGHRVRYVAIDDGSNRQSVTENLAALARHYGAERVEWQSPDEWRLDEQLRRW----A 120 Query: 132 QAHQGQTAVVDSEHFLTARHELPRLFEGRKQWLMEHFYRQMRRRFELLLDADGKPEGGQW 191 +A T+ VD+EHFLT RHEL +FEGRKQWLME FYR+MRRRF +LLD G PE GQW Sbjct: 121 EAQSLSTSEVDTEHFLTGRHELAAMFEGRKQWLMERFYREMRRRFGVLLDGTGAPESGQW 180 Query: 192 NFDHDNRKRWPGNPPEPRDWRQPHDHGALWEMLQAQGVRSFGEPQATQLRWPLDRTEALQ 251 NFDHDNRK W G+PPEP D R HDH ALWE ++ GV+SFG PQA LRWPL+RTEAL Sbjct: 181 NFDHDNRKPWRGSPPEPADARPVHDHRALWETIERSGVKSFGNPQAGALRWPLNRTEALA 240 Query: 252 HLDHFITTVLPHFGDYEDAMSSKARRLFHSLLSFALNVKMLHPLEVVRRAEEAWREGKAP 311 LD F+ VLPHFGD+EDAMSS +RLFHSLLSF+LNVKML+P EV+ RAE A+R GKAP Sbjct: 241 CLDAFVAQVLPHFGDFEDAMSSGHQRLFHSLLSFSLNVKMLNPREVIDRAEAAYRHGKAP 300 Query: 312 LAAVEGFIRQIIGWREYVRGIYWSQMPGYDERNALAHRLPLPAWFWTGQTRMNCLRHAIG 371 L AVEGFIRQI+GWREYVRGIYW+QMPGY N L H PLP+WFW+G+T+M CL+ AIG Sbjct: 301 LPAVEGFIRQILGWREYVRGIYWAQMPGYASCNVLNHDAPLPSWFWSGKTQMRCLQLAIG 360 Query: 372 QSLETAHAHHIQRLMVIGNFALLAGLDPKELHHWYLGIYIDAFEWVELPNTLGMSQWADG 431 QSL+TAHAHHIQRLMVIGNFALLAGL P E+H WYLG+YIDAFEWVELPNT+GMSQWADG Sbjct: 361 QSLQTAHAHHIQRLMVIGNFALLAGLAPDEVHRWYLGVYIDAFEWVELPNTVGMSQWADG 420 Query: 432 GIIATKPYVSSAAYIGRMSDYCQGCAYDPKQKTSADACPFNALYWDFFLRHQSTFGNNPR 491 G IATKPYVSSAAY+ RMSDYC+GC YD KQ+ ACP+NALYWDFF RH FG NPR Sbjct: 421 GRIATKPYVSSAAYLSRMSDYCKGCHYDSKQRVGERACPYNALYWDFFARHSEVFGRNPR 480 Query: 492 MGMAYQQIKKMQPDDVQALQQRADDLRSQLDTL 524 + M Y+Q+ KM+P++ AL++RA+++R+ L+ L Sbjct: 481 LSMVYRQLAKMEPEERDALRKRAEEVRASLEAL 513 >ref|YP_004388851.1| deoxyribodipyrimidine photolyase-like protein [Alicycliphilus denitrificans K601] gb|AEB85335.1| deoxyribodipyrimidine photolyase-related protein [Alicycliphilus denitrificans K601] Length = 512 Score = 714 bits (1843), Expect = 0.0, Method: Composition-based stats. Identities = 371/513 (72%), Positives = 411/513 (80%), Gaps = 4/513 (0%) Query: 12 ASTLRLILGDQLNAQHSWFDHADPEVVYVLMEVRSETDYVLHHAQKILAIFAAMRAFGEQ 71 A TLRL+LGDQL+ HSWF D +VVYVLMEVR ETDYVLHHAQKILAIFAAMR F Sbjct: 4 AHTLRLVLGDQLHPGHSWFAQVDAQVVYVLMEVRQETDYVLHHAQKILAIFAAMRDFARY 63 Query: 72 LRAAGHRVRYIRLDDPSNRQSLVDNLDALAAHYQASRVEWQAPDEWRVDQALQQWGDTWA 131 LRA GHRVRY+ LDDPSNRQS+ NL ALAAHY A +EWQ PDEWR+D LQ WG Sbjct: 64 LRAGGHRVRYVALDDPSNRQSIPGNLAALAAHYAAQCIEWQQPDEWRLDAQLQTWG---- 119 Query: 132 QAHQGQTAVVDSEHFLTARHELPRLFEGRKQWLMEHFYRQMRRRFELLLDADGKPEGGQW 191 A + AVV+SEHFLT R EL L RKQWLMEHFYR MRRR +LLLDADG PEGG+W Sbjct: 120 AAQPLKWAVVNSEHFLTERGELAALMGQRKQWLMEHFYRHMRRRCKLLLDADGAPEGGKW 179 Query: 192 NFDHDNRKRWPGNPPEPRDWRQPHDHGALWEMLQAQGVRSFGEPQATQLRWPLDRTEALQ 251 NFDHDNRKRWPG PPEP DWR HDH LW M+Q GV+SFG+PQA LRWPL+R+EAL Sbjct: 180 NFDHDNRKRWPGTPPEPADWRPRHDHSDLWRMVQRAGVQSFGDPQAAALRWPLNRSEALA 239 Query: 252 HLDHFITTVLPHFGDYEDAMSSKARRLFHSLLSFALNVKMLHPLEVVRRAEEAWREGKAP 311 LD FI T LPHFGDYEDA++++A RLFHSLLSFALNVKML PLEVV+RAE AWR G+AP Sbjct: 240 CLDAFIDTALPHFGDYEDALAAQAPRLFHSLLSFALNVKMLQPLEVVQRAEAAWRAGQAP 299 Query: 312 LAAVEGFIRQIIGWREYVRGIYWSQMPGYDERNALAHRLPLPAWFWTGQTRMNCLRHAIG 371 LAAVEGF+RQI+GWREYVRGIYW+ MPGY NALA LP WFW+G T M CL AI Sbjct: 300 LAAVEGFVRQIVGWREYVRGIYWAHMPGYASHNALAQHTSLPRWFWSGDTHMRCLHLAIT 359 Query: 372 QSLETAHAHHIQRLMVIGNFALLAGLDPKELHHWYLGIYIDAFEWVELPNTLGMSQWADG 431 QSL+TAHAHHIQRLMVIGNFALLAGL+P+ LH WYLGIYIDAFEWVELPNTLGMSQ ADG Sbjct: 360 QSLQTAHAHHIQRLMVIGNFALLAGLEPQALHRWYLGIYIDAFEWVELPNTLGMSQRADG 419 Query: 432 GIIATKPYVSSAAYIGRMSDYCQGCAYDPKQKTSADACPFNALYWDFFLRHQSTFGNNPR 491 G+IATKPYVSSAAY+ RM DYCQGCAYDPKQKT A ACPFNALYWDFF RH NPR Sbjct: 420 GVIATKPYVSSAAYLQRMGDYCQGCAYDPKQKTGARACPFNALYWDFFERHAPMLQGNPR 479 Query: 492 MGMAYQQIKKMQPDDVQALQQRADDLRSQLDTL 524 + + Y+Q+KKM + +AL+ +A LR +LDTL Sbjct: 480 LALVYRQLKKMPDVEREALRTQAGHLRERLDTL 512 >ref|YP_003278035.1| deoxyribodipyrimidine photolyase-like protein [Comamonas testosteroni CNB-2] gb|ACY32739.1| deoxyribodipyrimidine photolyase-related protein [Comamonas testosteroni CNB-2] Length = 519 Score = 711 bits (1834), Expect = 0.0, Method: Composition-based stats. Identities = 358/513 (69%), Positives = 404/513 (78%), Gaps = 4/513 (0%) Query: 12 ASTLRLILGDQLNAQHSWFDHADPEVVYVLMEVRSETDYVLHHAQKILAIFAAMRAFGEQ 71 A TLRL+LGDQLN +HSWF D +VVYVLMEVR ETDYVLHHAQKILAIFAAMR F Q Sbjct: 11 AHTLRLVLGDQLNPEHSWFRKVDLQVVYVLMEVRQETDYVLHHAQKILAIFAAMRDFARQ 70 Query: 72 LRAAGHRVRYIRLDDPSNRQSLVDNLDALAAHYQASRVEWQAPDEWRVDQALQQWGDTWA 131 LR+ GHRVRY+ +DD SNRQS+ NL ALA HY A V+WQ PDEWR+D LQ WA Sbjct: 71 LRSDGHRVRYVSIDDASNRQSIPGNLAALAVHYGAHTVQWQQPDEWRLDAQLQ----AWA 126 Query: 132 QAHQGQTAVVDSEHFLTARHELPRLFEGRKQWLMEHFYRQMRRRFELLLDADGKPEGGQW 191 + Q VDSEHFLTAR +L GR+QWLMEHFYR MRRR+ LLLD +P GGQW Sbjct: 127 SSQQLTCTAVDSEHFLTARDDLATQMRGRRQWLMEHFYRTMRRRYRLLLDEHERPFGGQW 186 Query: 192 NFDHDNRKRWPGNPPEPRDWRQPHDHGALWEMLQAQGVRSFGEPQATQLRWPLDRTEALQ 251 NFD DNRK WPG P EP DWR HDH LWE++Q V+SFG+ QA LRWPL+R EA++ Sbjct: 187 NFDSDNRKPWPGTPAEPEDWRPLHDHSTLWEIVQRSNVQSFGDAQADALRWPLNRQEAMR 246 Query: 252 HLDHFITTVLPHFGDYEDAMSSKARRLFHSLLSFALNVKMLHPLEVVRRAEEAWREGKAP 311 L+ F+T LPHFGDYEDAMSS+A RLFHSLLSFALNVKMLHPLEV++ AE AWR G AP Sbjct: 247 CLEAFVTHALPHFGDYEDAMSSQAPRLFHSLLSFALNVKMLHPLEVLQCAEAAWRSGHAP 306 Query: 312 LAAVEGFIRQIIGWREYVRGIYWSQMPGYDERNALAHRLPLPAWFWTGQTRMNCLRHAIG 371 LAAVEGF+RQI+GWREY+RGIYW+ MPGY+ RNAL H LPLP WFWTG+T M CL+ +I Sbjct: 307 LAAVEGFVRQILGWREYIRGIYWAHMPGYESRNALEHHLPLPHWFWTGETHMRCLQQSIK 366 Query: 372 QSLETAHAHHIQRLMVIGNFALLAGLDPKELHHWYLGIYIDAFEWVELPNTLGMSQWADG 431 QSL+TAHAHHIQRLMVIGNFALLAGL+P ELH WYLGIYIDAFEWVELPNTLGMSQ ADG Sbjct: 367 QSLQTAHAHHIQRLMVIGNFALLAGLNPMELHRWYLGIYIDAFEWVELPNTLGMSQRADG 426 Query: 432 GIIATKPYVSSAAYIGRMSDYCQGCAYDPKQKTSADACPFNALYWDFFLRHQSTFGNNPR 491 G+IATKPYVSSAAY+ RM DYCQGCAY+PKQKT ACPFNALYWDFF RH G+N R Sbjct: 427 GLIATKPYVSSAAYLQRMGDYCQGCAYNPKQKTGPSACPFNALYWDFFARHIDVLGSNHR 486 Query: 492 MGMAYQQIKKMQPDDVQALQQRADDLRSQLDTL 524 + + Y+Q +K P+ AL+ A LR QLD L Sbjct: 487 LALVYRQWQKFPPEQQSALRAHAQQLREQLDHL 519 >ref|ZP_03544265.1| deoxyribodipyrimidine photolyase-related protein [Comamonas testosteroni KF-1] gb|EED68551.1| deoxyribodipyrimidine photolyase-related protein [Comamonas testosteroni KF-1] Length = 519 Score = 704 bits (1818), Expect = 0.0, Method: Composition-based stats. Identities = 356/513 (69%), Positives = 398/513 (77%), Gaps = 4/513 (0%) Query: 12 ASTLRLILGDQLNAQHSWFDHADPEVVYVLMEVRSETDYVLHHAQKILAIFAAMRAFGEQ 71 A TLRL+LGDQLN +HSWF D +VVYVLMEVR ETDYVLHHAQKILAIFAAMR F Q Sbjct: 11 AHTLRLVLGDQLNPEHSWFRKVDLQVVYVLMEVRQETDYVLHHAQKILAIFAAMRDFARQ 70 Query: 72 LRAAGHRVRYIRLDDPSNRQSLVDNLDALAAHYQASRVEWQAPDEWRVDQALQQWGDTWA 131 LRA GHRVRY+ +DD SNRQS+ NL ALA HY A V+WQ PDEWR+D LQ WA Sbjct: 71 LRADGHRVRYVSIDDASNRQSIPGNLAALAVHYGAHTVQWQQPDEWRLDAQLQ----AWA 126 Query: 132 QAHQGQTAVVDSEHFLTARHELPRLFEGRKQWLMEHFYRQMRRRFELLLDADGKPEGGQW 191 + Q VDSEHFLTAR +L GR+QWLMEHFYR MRRR+ LLLD +P GGQW Sbjct: 127 SSQQLTCKAVDSEHFLTARDDLATQMRGRRQWLMEHFYRTMRRRYRLLLDEHEQPVGGQW 186 Query: 192 NFDHDNRKRWPGNPPEPRDWRQPHDHGALWEMLQAQGVRSFGEPQATQLRWPLDRTEALQ 251 NFD DNR WPG P EP DWR HDH LWE++Q V+SFG+ QA LRWPL+R EA++ Sbjct: 187 NFDRDNRNPWPGTPAEPEDWRPLHDHSTLWEIVQRSNVQSFGDAQADALRWPLNRQEAMR 246 Query: 252 HLDHFITTVLPHFGDYEDAMSSKARRLFHSLLSFALNVKMLHPLEVVRRAEEAWREGKAP 311 L+ F+T LPHFGDYEDAMSS+A RLFHSLLSFALNVKMLHPLEV++ AE AWR G AP Sbjct: 247 CLEAFVTHALPHFGDYEDAMSSQAPRLFHSLLSFALNVKMLHPLEVLQCAEAAWRSGHAP 306 Query: 312 LAAVEGFIRQIIGWREYVRGIYWSQMPGYDERNALAHRLPLPAWFWTGQTRMNCLRHAIG 371 LAAVEGF+RQ++GWREY+RGIYW+ MPGY+ RNAL H L LP WFWTG T M CL+ +I Sbjct: 307 LAAVEGFVRQLLGWREYIRGIYWAHMPGYESRNALDHHLSLPRWFWTGDTHMRCLQQSIK 366 Query: 372 QSLETAHAHHIQRLMVIGNFALLAGLDPKELHHWYLGIYIDAFEWVELPNTLGMSQWADG 431 QSL+TAHAHHIQRLMVIGNFALLAGLDP ELH WYLGIYIDAFEWVELPNTLGMSQ ADG Sbjct: 367 QSLQTAHAHHIQRLMVIGNFALLAGLDPVELHRWYLGIYIDAFEWVELPNTLGMSQRADG 426 Query: 432 GIIATKPYVSSAAYIGRMSDYCQGCAYDPKQKTSADACPFNALYWDFFLRHQSTFGNNPR 491 G+IATKPYVSS AY+ RM DYCQGCAY PKQKT ACPFNALYWDFF RH G+N R Sbjct: 427 GLIATKPYVSSGAYLQRMGDYCQGCAYTPKQKTGPSACPFNALYWDFFARHVDVLGSNHR 486 Query: 492 MGMAYQQIKKMQPDDVQALQQRADDLRSQLDTL 524 + + Y+Q +K P AL+ A LR QLD L Sbjct: 487 LALVYRQWQKFPPGQQSALRTHAQQLRDQLDHL 519