BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4669.p (389 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777111.1| sodium:galactoside symporter protein [Herbas... 466 e-129 ref|YP_293282.1| sodium:galactoside symporter family protein [Ra... 213 4e-53 ref|YP_004714238.1| Na+/melibiose symporter and related transpor... 208 1e-51 gb|AEA83895.1| Na+/melibiose symporter and related transporter [... 201 1e-49 ref|YP_001172488.1| Na+/melibiose symporter and related transpor... 198 1e-48 >ref|YP_003777111.1| sodium:galactoside symporter protein [Herbaspirillum seropedicae SmR1] gb|ADJ65203.1| sodium:galactoside symporter protein [Herbaspirillum seropedicae SmR1] Length = 414 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 308/386 (79%), Positives = 337/386 (87%) Query: 1 MAALPLFVQIPAYYASHVGVALAPLGWVLFAARLLDMLQDPLFGHLLDRSAQRQKRWMAA 60 MAALPLFVQIPAYYASHVG+ALAPLGWVLF ARLLDMLQDP+FGHLLDRSAQRQKRWMA Sbjct: 22 MAALPLFVQIPAYYASHVGLALAPLGWVLFGARLLDMLQDPVFGHLLDRSAQRQKRWMAM 81 Query: 61 AGVVLAVAFICLWKPPSTPQAAMVWLVAMLVLAYGAHSMLSIAYLSWGSRLPEQGMRAVP 120 AG VLAVAF+CLWKPP PQAAM+WLVAMLVLAYGAHSMLSIAYLSW SRLPE+G+RAV Sbjct: 82 AGAVLAVAFVCLWKPPHDPQAAMLWLVAMLVLAYGAHSMLSIAYLSWASRLPEKGLRAVA 141 Query: 121 WREGAGLAGVILASVVPVGILAADPALIDQRITWYCLFFGAVLGVALLLLLRQPAPPMMA 180 WRE AGLAGVI+ASV+P ILAA+ + ID RIT+YC F A+LG+ALL+LLRQ PP A Sbjct: 142 WREAAGLAGVIVASVIPAAILAAEASQIDARITFYCAGFAALLGLALLVLLRQNPPPPQA 201 Query: 181 QGERWAVSLRGLWANRAFRSLLPPYLLNALSAAIPATLALFFIEDQLQERALAGGFLAAY 240 G W +LRGLW AFR+LLPPYLLNALSAAI ATLALFFIEDQLQ+ LAG FLAAY Sbjct: 202 DGHHWKSALRGLWETPAFRTLLPPYLLNALSAAIAATLALFFIEDQLQQGRLAGLFLAAY 261 Query: 241 FGAAAVGLPLWSALARRFGTIACWRQAMLLSIAGFVGAVLLGPGDRWAFLLVCLATGAAL 300 FGAAA+GLPLW AL+RR G +ACWR AMLLS+AGF+GA LLGPGDR AFL VCLATGAAL Sbjct: 262 FGAAALGLPLWGALSRRVGAVACWRYAMLLSVAGFIGAALLGPGDRLAFLAVCLATGAAL 321 Query: 301 GADLLLPPVLLARVVTQRASVGAAFGILTMLGKLALALAGIALPLLSALDYQPGQGPSSS 360 GADLLLPPVLLAR V Q +VG AFGILTMLGKLALAL+GIALPLL+ALDY+PGQGPS S Sbjct: 322 GADLLLPPVLLARSVRQAQAVGVAFGILTMLGKLALALSGIALPLLAALDYRPGQGPSVS 381 Query: 361 LPLVYAALPCVLKLAAFVALGRYGRQ 386 LPLVYA LPC+LKL A+ LGRYGR+ Sbjct: 382 LPLVYALLPCLLKLLAWQVLGRYGRR 407 >ref|YP_293282.1| sodium:galactoside symporter family protein [Ralstonia eutropha JMP134] gb|AAZ65425.1| sodium:galactoside symporter family protein [Ralstonia eutropha JMP134] Length = 431 Score = 213 bits (543), Expect = 4e-53, Method: Composition-based stats. Identities = 170/400 (42%), Positives = 220/400 (55%), Gaps = 20/400 (5%) Query: 1 MAALPLFVQIPAYYASHVGVALAPLGWVLFAARLLDMLQDPLFGHLLDRSA--QRQKRWM 58 M ALP++V PAYY S +G+ L+ G VL RL+D +QDP G D A +R + Sbjct: 20 MVALPIYVLAPAYYTSRLGMPLSTAGLVLMLTRLVDTVQDPWLGRWADALAGSRRLHPAL 79 Query: 59 AAAGVVLAVAFICLWKPPSTPQAAMVWLVAMLVLAYGAHSMLSIAYLSWGSRLP---EQG 115 A + L AF LW PP + A W A LVL Y AHS +++AYL+WG+ L + Sbjct: 80 WATSLCLIAAFAALWMPPVSGWALTAWFAAALVLVYAAHSFMNVAYLAWGASLGLNCDAL 139 Query: 116 MRAVPWREGAGLAGVILASVVPVGILAADPALIDQRITWYCLFFGAVLGVALLLLLRQPA 175 RA WREGAG+ GV++AS P ++ D + + F +L A+ LL P Sbjct: 140 TRAAAWREGAGVLGVLIASAGPAWLMERDDLAPRNAMIPFIALFAILLIGAVWLLRFAPP 199 Query: 176 PPMMAQGERWAVSLRGL-----------WANRAFRSLLPPYLLNALSAAIPATLALFFIE 224 M G RGL N +FR LL PY LN LS AIPATLA+FFIE Sbjct: 200 WQRMPPGRTGRSGHRGLRPFIVSVARTVLRNPSFRMLLVPYFLNGLSVAIPATLAVFFIE 259 Query: 225 DQLQERALAGGFLAAYFGAAAVGLPLWSALARRFGTIACWRQAMLLSIAGFVGAVLLGPG 284 D+L LA YF AAA+GLP+W ++RR G WR A+ ++IA FV A LG G Sbjct: 260 DRLGIPRWVTPSLAIYFSAAALGLPVWVGISRRIGPQRAWRAAIWVAIAAFVWAATLGRG 319 Query: 285 DRWAFLLVCLATGAALGADLLLPPVLLARVVTQRASVGAAFGILTMLGKLALALAGIALP 344 D FL++C+A G ALGADL +PPV+LA+ + GA FGI T+ GKL LA++ + LP Sbjct: 320 DVVPFLVICVACGFALGADLAIPPVILAQCLPDGEGAGACFGIWTLTGKLCLAISALTLP 379 Query: 345 LLSALDYQPGQG----PSSSLPLVYAALPCVLKLAAFVAL 380 L+ L Y PG P +L YA LPC+LKL A L Sbjct: 380 GLAWLGYVPGFPATGIPGMALAFTYAGLPCLLKLGALSTL 419 >ref|YP_004714238.1| Na+/melibiose symporter and related transporter [Pseudomonas stutzeri ATCC 17588 = LMG 11199] gb|AEJ05149.1| Na+/melibiose symporter and related transporter [Pseudomonas stutzeri ATCC 17588 = LMG 11199] Length = 402 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 174/386 (45%), Positives = 224/386 (58%), Gaps = 15/386 (3%) Query: 1 MAALPLFVQIPAYYASHVGVALAPLGWVLFAARLLDMLQDPLFGHLLDRSAQRQKRWMAA 60 MA LP++V +P +YA+ +G+ L G VLF ARLLD +QDP G L+DR + R + Sbjct: 8 MAMLPIYVLVPNFYAADLGLGLTLTGAVLFLARLLDTVQDPGLGRLIDRRSPRGWTILLG 67 Query: 61 AGVVLAVAFICLWKPPSTPQAAMVWLVAMLVL---AYGAHSMLSIAYLSWGSRL---PEQ 114 VL + P + + L Y HS+++I YL+WG+RL P+ Sbjct: 68 GAAVLLSLAMAALLIPPGNFGSFGLAAWLGALLALTYTLHSLINITYLAWGARLSDQPDT 127 Query: 115 GMRAVPWREGAGLAGVILASVVPVGILAADPALIDQRITWYCLFFGAVLGVALLLLLRQP 174 R WREGAGL GV+LASV+P +LA + +T+ F + LL P Sbjct: 128 RTRVAAWREGAGLFGVVLASVLPT-VLATQYGMAAALVTFAATFAVLLFLGTATLLFGAP 186 Query: 175 AP--PMMAQGERWAVSLRGLWANRAFRSLLPPYLLNALSAAIPATLALFFIEDQLQERAL 232 P + Q W + LR NRAF+ L Y +NA++ AIPATLALFFI D+LQ L Sbjct: 187 RPHRAVRTQASSWRLPLR----NRAFQRLAGVYFINAVAVAIPATLALFFIADRLQLAQL 242 Query: 233 AGGFLAAYFGAAAVGLPLWSALARRFGTIACWRQAMLLSIAGFVGAVLLGPGDRWAFLLV 292 G FLA YF + A+GLPLW+ LA R G WR ML + A F+ AVLL PG WA+ V Sbjct: 243 TGLFLALYFISGALGLPLWTRLADRLGKRRSWRIGMLTACAAFIWAVLLEPGSAWAYAGV 302 Query: 293 CLATGAALGADLLLPPVLLARV--VTQRASVGAAFGILTMLGKLALALAGIALPLLSALD 350 C+ +G ALGADL LPP LLA + V +R S A FG+ + L KLALALAG+ALPLL+ D Sbjct: 303 CVMSGLALGADLALPPALLADIIPVEERDSTAAYFGLWSFLAKLALALAGLALPLLALSD 362 Query: 351 YQPGQGPSSSLPLVYAALPCVLKLAA 376 YQPG +L LVYA LPC+LKL A Sbjct: 363 YQPGTAAGWNLALVYAGLPCLLKLVA 388 >gb|AEA83895.1| Na+/melibiose symporter and related transporter [Pseudomonas stutzeri DSM 4166] Length = 411 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 177/383 (46%), Positives = 239/383 (62%), Gaps = 10/383 (2%) Query: 1 MAALPLFVQIPAYYASHVGVALAPLGWVLFAARLLDMLQDPLFGHLLDRSAQRQ-KRWMA 59 MA LP++V +P +YA+ +G+ LA G VLF ARLLD +QDP G L+DR + R R +A Sbjct: 18 MAMLPIYVLVPNFYAADLGLGLALTGSVLFLARLLDTVQDPWLGRLIDRRSPRGWTRLLA 77 Query: 60 AAGVVLAVAFICLWKPPSTPQAAM-VWLVAMLVLAYGAHSMLSIAYLSWGSRLPEQ---G 115 ++ ++L++A L PP+ A+ VWL A L LAY HS+L+I YL+WG+RL +Q Sbjct: 78 SSALLLSLAMAALLVPPALDSLALAVWLGASLALAYTLHSLLNITYLAWGARLSDQLDVR 137 Query: 116 MRAVPWREGAGLAGVILASVVPVGILAADPALIDQRITWYCLFFGAVLGVALLLLLRQPA 175 R WREGAGL GV+LASV+P + A + ++ + F +L A+++LL A Sbjct: 138 TRVAAWREGAGLLGVVLASVLPSAL--ATRYGMAAALSVFAATFAVLLCAAMVILL-CAA 194 Query: 176 PPMMAQGERWAVSLRGLWANRAFRSLLPPYLLNALSAAIPATLALFFIEDQLQERALAGG 235 P +R S R N AFR L + +NA++ AIPATLALFFI D+LQ L G Sbjct: 195 PQPRRSAQRVPASWRQPLRNGAFRRLAGIFFINAVAVAIPATLALFFIADRLQLAQLTGL 254 Query: 236 FLAAYFGAAAVGLPLWSALARRFGTIACWRQAMLLSIAGFVGAVLLGPGDRWAFLLVCLA 295 FLA YF + A GL LW+ LA R G WR ML + A FV A+LL PG WA+ VC+ Sbjct: 255 FLALYFLSGAAGLTLWTRLADRLGKRRSWRIGMLSACAAFVWALLLDPGSAWAYAAVCVL 314 Query: 296 TGAALGADLLLPPVLLARVV--TQRASVGAAFGILTMLGKLALALAGIALPLLSALDYQP 353 +G ALGADL LPP LLA ++ +R + FG+ ++L KLALA+AG+ALPLL+ YQP Sbjct: 315 SGLALGADLALPPALLADIIPAAERDATAGYFGLWSLLAKLALAIAGLALPLLALTGYQP 374 Query: 354 GQGPSSSLPLVYAALPCVLKLAA 376 G +L L+YA LPC+LK+ A Sbjct: 375 GTPAGWNLALIYAGLPCLLKVLA 397 >ref|YP_001172488.1| Na+/melibiose symporter and related transporter [Pseudomonas stutzeri A1501] gb|ABP79646.1| Na+/melibiose symporter and related transporter [Pseudomonas stutzeri A1501] Length = 411 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 171/377 (45%), Positives = 227/377 (60%), Gaps = 10/377 (2%) Query: 1 MAALPLFVQIPAYYASHVGVALAPLGWVLFAARLLDMLQDPLFGHLLDRSAQR--QKRWM 58 MA LP++V +P +YA+ +G+ LA G VLF ARLLD +QDP G L+DR + R + Sbjct: 18 MAMLPIYVLVPNFYAADLGLGLALTGSVLFLARLLDTVQDPWLGRLIDRRSPRGWTRLLA 77 Query: 59 AAAGVVLAVAFICLWKPPSTPQAAMVWLVAMLVLAYGAHSMLSIAYLSWGSRLPEQ---G 115 ++A ++ L P A VWL A L LAY HS+++I YL+WG+RL +Q Sbjct: 78 SSALLLSLAMAALLAPPALDSLALAVWLGASLALAYTLHSLVNITYLAWGARLSDQLDVR 137 Query: 116 MRAVPWREGAGLAGVILASVVPVGILAADPALIDQRITWYCLFFGAVLGVALLLLLRQPA 175 R WREGAGL GV+LASV+P + A + ++ + F +L A+++LL A Sbjct: 138 TRVAAWREGAGLFGVVLASVLPSAL--ATRYGMAAALSVFAATFAVLLCAAMVILL-CAA 194 Query: 176 PPMMAQGERWAVSLRGLWANRAFRSLLPPYLLNALSAAIPATLALFFIEDQLQERALAGG 235 P +R S R N AFR L + +NA++ AIPATLALFFI D+LQ L G Sbjct: 195 PQPRRSAQRVPASWRQPLRNGAFRRLAGIFFINAVAVAIPATLALFFIADRLQLAQLTGL 254 Query: 236 FLAAYFGAAAVGLPLWSALARRFGTIACWRQAMLLSIAGFVGAVLLGPGDRWAFLLVCLA 295 FLA YF + A GLPLW+ LA R G WR ML + A FV A+LL PG WA+ VC+ Sbjct: 255 FLALYFLSGAAGLPLWTRLADRLGKRRSWRIGMLSACAAFVWALLLDPGSAWAYAAVCVL 314 Query: 296 TGAALGADLLLPPVLLARVV--TQRASVGAAFGILTMLGKLALALAGIALPLLSALDYQP 353 +G ALGADL LPP LLA V+ +R + FG+ ++L KLALA+AG+ALPLL+ YQP Sbjct: 315 SGLALGADLALPPALLADVIPAAERDATAGYFGLWSLLAKLALAIAGLALPLLALTGYQP 374 Query: 354 GQGPSSSLPLVYAALPC 370 G +L L+YA LPC Sbjct: 375 GTPAGWNLALIYAGLPC 391