BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4668.p (203 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777110.1| hypothetical protein Hsero_3724 [Herbaspiril... 255 3e-66 gb|AEA83896.1| conserved hypothetical protein [Pseudomonas stutz... 143 1e-32 ref|YP_001172489.1| hypothetical protein PST_1973 [Pseudomonas s... 141 5e-32 ref|YP_001894691.1| hypothetical protein Bphyt_1048 [Burkholderi... 139 4e-31 ref|YP_004381169.1| hypothetical protein MDS_3386 [Pseudomonas m... 137 9e-31 >ref|YP_003777110.1| hypothetical protein Hsero_3724 [Herbaspirillum seropedicae SmR1] gb|ADJ65202.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 193 Score = 255 bits (651), Expect = 3e-66, Method: Composition-based stats. Identities = 134/158 (84%), Positives = 141/158 (89%), Gaps = 1/158 (0%) Query: 46 AHAAQPWREALPAQIQTVGSGTMTWLGFRIYQATLWAAQKPLDESQPFALQLDYKVKISR 105 HAA WREALPA Q +GSGTMTWLGFRIYQATLWA Q+PLD SQPFALQLDYKVKISR Sbjct: 37 GHAAASWREALPAA-QPIGSGTMTWLGFRIYQATLWARQRPLDPSQPFALQLDYKVKISR 95 Query: 106 DKLASTSIEEIQRMSPAPIAGPTLARWKSELNRAFVDVADGDELIGVYLPQRGMRLYDRD 165 DKLASTS+EEIQRMSP PIA TLARWK EL RAFVDVADGDEL+G+YLP RGMRLYDRD Sbjct: 96 DKLASTSVEEIQRMSPTPIAAATLARWKEELVRAFVDVADGDELVGLYLPGRGMRLYDRD 155 Query: 166 KMLAEIADPELARSFFNIWLGQPSRDESLRRRLLGETP 203 K LAEIADPELA++FFNIWLGQPSRDE LRRRLLGE P Sbjct: 156 KQLAEIADPELAKAFFNIWLGQPSRDEGLRRRLLGENP 193 >gb|AEA83896.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166] Length = 173 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 77/168 (45%), Positives = 103/168 (61%), Gaps = 4/168 (2%) Query: 34 LMALLTLWPGRAAHAAQPWREALPAQIQTVGSGTMTWLGFRIYQATLWAAQKPLDESQPF 93 L++LL L PG A + WREA+P + VG GT+ GFRIY A LW+ PL PF Sbjct: 9 LVSLLCLLPGLANGS---WREAMP-DARLVGEGTLRIFGFRIYDARLWSPTTPLQARTPF 64 Query: 94 ALQLDYKVKISRDKLASTSIEEIQRMSPAPIAGPTLARWKSELNRAFVDVADGDELIGVY 153 AL+L Y ISRD TS++E++R+S + ARW+ + +AFVDV G+ + GVY Sbjct: 65 ALELTYHRSISRDDFVRTSLDEMKRLSGPDLDASVPARWREHMQQAFVDVRPGERITGVY 124 Query: 154 LPQRGMRLYDRDKMLAEIADPELARSFFNIWLGQPSRDESLRRRLLGE 201 LP+RG R Y +++ E+ DP+ A +FF IW SRD LRR LLGE Sbjct: 125 LPERGCRFYVNERLHHEVTDPQFAEAFFAIWFDPRSRDPGLRRSLLGE 172 >ref|YP_001172489.1| hypothetical protein PST_1973 [Pseudomonas stutzeri A1501] gb|ABP79647.1| conserved hypothetical protein [Pseudomonas stutzeri A1501] Length = 173 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 77/168 (45%), Positives = 103/168 (61%), Gaps = 4/168 (2%) Query: 34 LMALLTLWPGRAAHAAQPWREALPAQIQTVGSGTMTWLGFRIYQATLWAAQKPLDESQPF 93 L++LL L PG A+ + WREA+P + VG GT+ GFRIY A LW+ PL PF Sbjct: 9 LVSLLCLLPGLASGS---WREAMP-DARLVGEGTLRIFGFRIYDARLWSPTTPLQARTPF 64 Query: 94 ALQLDYKVKISRDKLASTSIEEIQRMSPAPIAGPTLARWKSELNRAFVDVADGDELIGVY 153 AL+L Y ISRD TS++E++R+S ARW+ + +AFVDV G+ + GVY Sbjct: 65 ALELTYHRSISRDDFVRTSLDEMKRLSGPDPDASVPARWREHMQQAFVDVRPGERITGVY 124 Query: 154 LPQRGMRLYDRDKMLAEIADPELARSFFNIWLGQPSRDESLRRRLLGE 201 LP+RG R Y +++ E+ DP+ A +FF IW SRD LRR LLGE Sbjct: 125 LPERGCRFYVNERLHHEVTDPQFAEAFFAIWFDPRSRDPGLRRSLLGE 172 >ref|YP_001894691.1| hypothetical protein Bphyt_1048 [Burkholderia phytofirmans PsJN] gb|ACD15467.1| conserved hypothetical protein [Burkholderia phytofirmans PsJN] Length = 182 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 72/171 (42%), Positives = 106/171 (61%), Gaps = 4/171 (2%) Query: 33 FLMALLTLWPGRAAHAAQPWREALPAQIQTVGSGTMTWLGFRIYQATLWAAQKPLDESQP 92 F+ +L LW + A WR + + Q VG G + LGFR+Y+A +W+ + P+D Sbjct: 16 FVALVLALW---VSAACADWRGDVQSA-QLVGEGDFSVLGFRLYRAQMWSERVPVDYDAR 71 Query: 93 FALQLDYKVKISRDKLASTSIEEIQRMSPAPIAGPTLARWKSELNRAFVDVADGDELIGV 152 FAL + Y I R++LA T I EI+R++ PI TL RW++++ +AFVDV+ GD+L V Sbjct: 72 FALHIVYARGIKRERLADTGISEIKRLAGVPIPADTLERWRADMLQAFVDVSPGDQLSAV 131 Query: 153 YLPQRGMRLYDRDKMLAEIADPELARSFFNIWLGQPSRDESLRRRLLGETP 203 YLP +G+R Y ++M E DP AR+FF IWL +R +LR++LLG P Sbjct: 132 YLPDKGVRFYAGERMTGEFDDPAFARAFFGIWLDPSTRAPTLRKQLLGTAP 182 >ref|YP_004381169.1| hypothetical protein MDS_3386 [Pseudomonas mendocina NK-01] gb|AEB59417.1| hypothetical protein MDS_3386 [Pseudomonas mendocina NK-01] Length = 181 Score = 137 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 70/152 (46%), Positives = 96/152 (63%), Gaps = 1/152 (0%) Query: 52 WREALPAQIQTVGSGTMTWLGFRIYQATLWAAQKPLDESQPFALQLDYKVKISRDKLAST 111 WRE LP + + VGSG +W GF +Y A LW+ + +D SQPFAL+L Y+ ISR+ L T Sbjct: 31 WREQLP-EARLVGSGDFSWFGFSVYNAKLWSPTRQVDFSQPFALELTYRRSISRETLVDT 89 Query: 112 SIEEIQRMSPAPIAGPTLARWKSELNRAFVDVADGDELIGVYLPQRGMRLYDRDKMLAEI 171 S++EI+R++ P+ W ++ +AFVDV DG + GV+LP+RG R Y K+ I Sbjct: 90 SLDEIRRINGQPLDREQQDDWTQQMRQAFVDVTDGTRITGVFLPERGCRFYVDGKLQHVI 149 Query: 172 ADPELARSFFNIWLGQPSRDESLRRRLLGETP 203 DPE AR+FF+IWL +R LR LLG P Sbjct: 150 DDPEFARAFFSIWLDPQTRSPKLRTALLGLNP 181