BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4667.p (322 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777109.1| LysR family transcription regulator protein ... 499 e-139 ref|YP_298329.1| regulatory protein LysR [Ralstonia eutropha JMP... 393 e-107 ref|YP_004157363.1| LysR family transcriptional regulator [Vario... 377 e-103 ref|ZP_08874297.1| LysR family transcriptional regulator [Vermin... 375 e-102 ref|YP_001764625.1| LysR family transcriptional regulator [Burkh... 367 2e-99 >ref|YP_003777109.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65201.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 259/305 (84%), Positives = 283/305 (92%) Query: 18 VDRWNQFELFVQVAELGSLSRAAEALGMSNAAASRSLAALEERLGARLVERSTRRLGLSQ 77 +DRW+QFELFVQVAELGSLSRAAEALG+SNAAASR+LAALE+RLGARLVERSTRRLGLS+ Sbjct: 1 MDRWSQFELFVQVAELGSLSRAAEALGLSNAAASRALAALEQRLGARLVERSTRRLGLSR 60 Query: 78 AGEAFYRHCKAALTQMKEAEALVNANSVAPGGLLRVTSSLSFCMKHISPLLPRFHRLYPD 137 AGE FYRHCKAALTQMKEAE VNA S AP G LR+TSSLSFCMKHISPLLPRFH+ YP+ Sbjct: 61 AGEDFYRHCKAALTQMKEAEQQVNAASAAPSGTLRITSSLSFCMKHISPLLPRFHQRYPE 120 Query: 138 ITLEVVAANRYVDLLDSGIDVAIRTREFEPDSNIAVRRLAATRRILAASPGYLAARGVPR 197 + LEV+AANRY+DLLDS ID+AIRTREFEPD+NIAVRRLA TRRILAA+PGYLAARG PR Sbjct: 121 VRLEVIAANRYMDLLDSDIDLAIRTREFEPDANIAVRRLATTRRILAAAPGYLAARGTPR 180 Query: 198 ALDDLAAHDLLVYSHSNHPNLLHFTHRDGRERQLDITALMQSNDGQIIRAAALEGLGILI 257 LDDLA HDLLVYSH+ PN LH + RDG +R L+I +LMQSNDGQIIRAAALEGLGILI Sbjct: 181 TLDDLAQHDLLVYSHAKEPNRLHLSGRDGSQRTLEIKSLMQSNDGQIIRAAALEGLGILI 240 Query: 258 QPNYIIYDDVVAGRLVPVLDEWDLPRLTINIAYQGRKHLPARVRVFVDFLLQHFEEMDYE 317 QPNYIIYDD+VAGRLVPVLDEWDLPRL+INIAYQGRKHLPARVRVF+DFL+QHFEEMDYE Sbjct: 241 QPNYIIYDDIVAGRLVPVLDEWDLPRLSINIAYQGRKHLPARVRVFIDFLVQHFEEMDYE 300 Query: 318 RKWTR 322 RKWTR Sbjct: 301 RKWTR 305 >ref|YP_298329.1| regulatory protein LysR [Ralstonia eutropha JMP134] gb|AAZ63485.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134] Length = 304 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 192/305 (62%), Positives = 246/305 (80%), Gaps = 3/305 (0%) Query: 18 VDRWNQFELFVQVAELGSLSRAAEALGMSNAAASRSLAALEERLGARLVERSTRRLGLSQ 77 +DRW + ELFVQ AE GS+SRAAE+L MSNAAASR L++LE RL ARL+ER+TRRL L+Q Sbjct: 1 MDRWTEIELFVQTAEFGSISRAAESLEMSNAAASRYLSSLERRLSARLIERNTRRLYLTQ 60 Query: 78 AGEAFYRHCKAALTQMKEAEALVNANSVAPGGLLRVTSSLSFCMKHISPLLPRFHRLYPD 137 GE ++R CK L +MKEAEA V+A + P G L +T+SLSF MKH++PL+P F YP Sbjct: 61 VGEQYFRRCKELLAEMKEAEADVSAAVLEPSGTLTITASLSFAMKHLAPLVPEFTTRYPK 120 Query: 138 ITLEVVAANRYVDLLDSGIDVAIRTREFEPDSNIAVRRLAATRRILAASPGYLAARGVPR 197 + + V+AANRY D++DSG D+AIRTREFEPDSN+ VRRLA TRR+LAA+P YL G+PR Sbjct: 121 VNVNVLAANRYYDIMDSGTDLAIRTREFEPDSNLTVRRLAQTRRVLAATPRYLDTHGIPR 180 Query: 198 ALDDLAAHDLLVYSHSNHPNLLHFTHRDGRERQ-LDITALMQSNDGQIIRAAALEGLGIL 256 +++ LA H +L+YS++N PN L FT G E+Q + + + M+SNDGQ++RAAALEG+GIL Sbjct: 181 SVEALADHSMLIYSYANRPNELSFTR--GDEKQVVTVRSKMESNDGQVLRAAALEGMGIL 238 Query: 257 IQPNYIIYDDVVAGRLVPVLDEWDLPRLTINIAYQGRKHLPARVRVFVDFLLQHFEEMDY 316 +QP YI+YDD+VAGRL+PVLD+WDLPRLTINIA+Q R HLPAR R+F++ L+ HFE MDY Sbjct: 239 VQPKYILYDDIVAGRLIPVLDDWDLPRLTINIAFQNRTHLPARTRLFIELLVSHFERMDY 298 Query: 317 ERKWT 321 ERKWT Sbjct: 299 ERKWT 303 >ref|YP_004157363.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gb|ADU39252.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 309 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 183/304 (60%), Positives = 237/304 (77%), Gaps = 1/304 (0%) Query: 18 VDRWNQFELFVQVAELGSLSRAAEALGMSNAAASRSLAALEERLGARLVERSTRRLGLSQ 77 +DRW + L VQ+A+ GSLSRAAEALG+SNAAASR L+ALE RLGARLVER+TRRL L+ Sbjct: 1 MDRWTEIALLVQIADAGSLSRAAEALGLSNAAASRHLSALEARLGARLVERNTRRLYLTD 60 Query: 78 AGEAFYRHCKAALTQMKEAEALVNANSVAPGGLLRVTSSLSFCMKHISPLLPRFHRLYPD 137 G F K L + +AE+ VNA ++ P G+LR+T+SLSF + HI+PLL + + YP Sbjct: 61 TGREFCARAKTILADLADAESTVNATALNPTGVLRITASLSFSIHHIAPLLRDYTQRYPG 120 Query: 138 ITLEVVAANRYVDLLDSGIDVAIRTREFEPDSNIAVRRLAATRRILAASPGYLAARGVPR 197 +T+ V AANRY DL+D+ IDVAIRTRE+EPDSN+ +RRL TRR+LAASP Y A G P+ Sbjct: 121 VTVHVEAANRYFDLIDNNIDVAIRTREYEPDSNVTIRRLGETRRVLAASPRYFAQHGFPK 180 Query: 198 ALDDLAAHDLLVYSHSNHPNLLHFTHRDGRERQLDITALMQSNDGQIIRAAALEGLGILI 257 LD+L H LL+Y+H+N+PN L FT R G + +T L++SNDGQ++RAAAL+G+GIL+ Sbjct: 181 TLDELKRHKLLIYTHANNPNELRFT-RKGETHTVSVTGLLESNDGQVLRAAALDGMGILV 239 Query: 258 QPNYIIYDDVVAGRLVPVLDEWDLPRLTINIAYQGRKHLPARVRVFVDFLLQHFEEMDYE 317 QP YI+Y+D+VAGRLVP LD+WDLP LTIN+AY RKHL A+VR F+DF+ HF++M+YE Sbjct: 240 QPTYIVYEDIVAGRLVPTLDDWDLPHLTINLAYPSRKHLSAKVRSFIDFMAAHFQKMEYE 299 Query: 318 RKWT 321 RKWT Sbjct: 300 RKWT 303 >ref|ZP_08874297.1| LysR family transcriptional regulator [Verminephrobacter sp. At4] Length = 309 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 188/304 (61%), Positives = 240/304 (78%), Gaps = 1/304 (0%) Query: 18 VDRWNQFELFVQVAELGSLSRAAEALGMSNAAASRSLAALEERLGARLVERSTRRLGLSQ 77 +D W + ELFV++AE GSLSRAAE LG+SNAAASR L ALE RLGARLVER+TRRL L+ Sbjct: 1 MDHWTEIELFVRIAESGSLSRAAETLGLSNAAASRHLVALEARLGARLVERNTRRLYLTD 60 Query: 78 AGEAFYRHCKAALTQMKEAEALVNANSVAPGGLLRVTSSLSFCMKHISPLLPRFHRLYPD 137 G+AF++ K L +K+AE NA S+ P G LRVT+SLSF ++H++P++ + R+YP+ Sbjct: 61 VGQAFFQRTKPILLDLKDAEQSANAASLNPSGTLRVTASLSFAVQHLAPVMREYTRIYPE 120 Query: 138 ITLEVVAANRYVDLLDSGIDVAIRTREFEPDSNIAVRRLAATRRILAASPGYLAARGVPR 197 + + + ANRYVD++D IDVAIRTRE EPDSN +RRLA TRRIL ASPGYLA G R Sbjct: 121 VRVHIEVANRYVDIIDQNIDVAIRTRESEPDSNTTIRRLAETRRILVASPGYLAQHGPLR 180 Query: 198 ALDDLAAHDLLVYSHSNHPNLLHFTHRDGRERQLDITALMQSNDGQIIRAAALEGLGILI 257 L+DL+AH LL+Y+++N+PN L F+ RDGR + + L++SNDGQ++RAAAL+G+GILI Sbjct: 181 LLEDLSAHRLLIYTYANNPNELRFS-RDGRTTVVQVHGLLESNDGQVLRAAALDGMGILI 239 Query: 258 QPNYIIYDDVVAGRLVPVLDEWDLPRLTINIAYQGRKHLPARVRVFVDFLLQHFEEMDYE 317 QP YI+Y+D+VAGRLVPVLD WDLPRLTIN+AY RK+L ARVR F+DF HF +MDYE Sbjct: 240 QPTYILYEDIVAGRLVPVLDAWDLPRLTINLAYPSRKYLSARVRSFIDFFAAHFCKMDYE 299 Query: 318 RKWT 321 RKWT Sbjct: 300 RKWT 303 >ref|YP_001764625.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gb|ACA90503.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 307 Score = 367 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 184/303 (60%), Positives = 234/303 (77%), Gaps = 1/303 (0%) Query: 18 VDRWNQFELFVQVAELGSLSRAAEALGMSNAAASRSLAALEERLGARLVERSTRRLGLSQ 77 +D+W Q E FVQVAELGSLS+AAE LGMS+AAASR L ALEERLGARLVER+TRRL L+ Sbjct: 1 MDKWTQIEFFVQVAELGSLSKAAERLGMSSAAASRCLTALEERLGARLVERTTRRLWLTD 60 Query: 78 AGEAFYRHCKAALTQMKEAEALVNANSVAPGGLLRVTSSLSFCMKHISPLLPRFHRLYPD 137 AG ++R C A LT++ EA+A VN SV P G LRVT+S+SF +I+P LP FHR YP+ Sbjct: 61 AGHEYHRRCVAILTELSEADAAVNEASVNPAGTLRVTASVSFASIYIAPALPEFHRRYPN 120 Query: 138 ITLEVVAANRYVDLLDSGIDVAIRTREFEPDSNIAVRRLAATRRILAASPGYLAARGVPR 197 + +++VAANRY D +++GIDVAIRTRE E DS I VR+LA TRR+LAASPGYLA G P Sbjct: 121 LNVQIVAANRYPDFIEAGIDVAIRTREHEADSGITVRKLAETRRVLAASPGYLAKHGAPA 180 Query: 198 ALDDLAAHDLLVYSHSNHPNLLHFTHRDGRERQLDITALMQSNDGQIIRAAALEGLGILI 257 D L H LLVY+ +N P +LHF H +++ + I +++ +N+GQ+IR AAL GLGILI Sbjct: 181 TPDALGEHRLLVYNLANDPYVLHFRH-GAKKQSVTIKSVLDANEGQVIRVAALAGLGILI 239 Query: 258 QPNYIIYDDVVAGRLVPVLDEWDLPRLTINIAYQGRKHLPARVRVFVDFLLQHFEEMDYE 317 QP YII+DD+VAG+LVPVL +W LP LT+NIAYQ R+H PA++RVF +FL++ FE + Sbjct: 240 QPLYIIHDDIVAGKLVPVLTDWQLPALTVNIAYQSRRHQPAKIRVFTEFLIERFERLGLA 299 Query: 318 RKW 320 RKW Sbjct: 300 RKW 302