BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4658.p         (154 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777103.1| excinuclease ATPase subunit [Herbaspirillum ...   243   5e-63
ref|YP_004754207.1| excinuclease ATPase subunit [Collimonas fung...   138   3e-31
ref|ZP_02884834.1| putative excinuclease, ATPase subunit [Burkho...   129   1e-28
ref|YP_004229152.1| excinuclease, ATPase subunit [Burkholderia s...   126   1e-27
ref|YP_003907889.1| putative excinuclease, ATPase subunit [Burkh...   124   5e-27

>ref|YP_003777103.1| excinuclease ATPase subunit [Herbaspirillum seropedicae SmR1]
 gb|ADJ65195.1| excinuclease ATPase subunit protein [Herbaspirillum seropedicae
           SmR1]
          Length = 147

 Score =  243 bits (621), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 129/147 (87%), Positives = 138/147 (93%)

Query: 8   MKTISITLALTLALAAALPAQARDTKHLLPLDSTADMKDKEGILDGSVKFYFAGQAHPAV 67
           MKT S+ LA+TLAL+AALPAQARDTKHLLPLDS + MKDKEG+LDGSVKFYFAGQ HPAV
Sbjct: 1   MKTSSLALAVTLALSAALPAQARDTKHLLPLDSASSMKDKEGVLDGSVKFYFAGQPHPAV 60

Query: 68  LEKIATDVTNQKTNAVGKSDEEACKWVFLSALVQLHKKARELGGNGVVNIVSYYKKNEMA 127
           LEKI+TDVTN KTNA GKSDEEACKW FLS LVQLHKKA+ELGGNGVVNIVSYYKKNEMA
Sbjct: 61  LEKISTDVTNMKTNAFGKSDEEACKWAFLSGLVQLHKKAKELGGNGVVNIVSYYKKNEMA 120

Query: 128 SATQFECHAGATMAGVALKGDIVKLGQ 154
           SAT+FECHAGATMAGVALKGDIVKLG+
Sbjct: 121 SATEFECHAGATMAGVALKGDIVKLGK 147


>ref|YP_004754207.1| excinuclease ATPase subunit [Collimonas fungivorans Ter331]
 gb|AEK63384.1| excinuclease ATPase subunit [Collimonas fungivorans Ter331]
          Length = 171

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 74/149 (49%), Positives = 101/149 (67%), Gaps = 1/149 (0%)

Query: 7   DMKTISITLALTLA-LAAALPAQARDTKHLLPLDSTADMKDKEGILDGSVKFYFAGQAHP 65
           +MK + +  A++   L +A+ AQA D   +LP+     + D +G L  SV+FYF  Q  P
Sbjct: 23  NMKKLILIAAVSAGMLLSAVSAQAADRTLMLPVAGALAVNDAQGRLGDSVRFYFGDQRTP 82

Query: 66  AVLEKIATDVTNQKTNAVGKSDEEACKWVFLSALVQLHKKARELGGNGVVNIVSYYKKNE 125
            VLEK   + T+Q+TNA GKSDE+AC WVFLSA++ L ++A++LG N VVNIVS Y   E
Sbjct: 83  KVLEKFGGEKTSQRTNAFGKSDEKACNWVFLSAMLHLQQRAQDLGANAVVNIVSNYNNVE 142

Query: 126 MASATQFECHAGATMAGVALKGDIVKLGQ 154
            ASAT+FECH GA MAGVALKG+  ++ +
Sbjct: 143 HASATEFECHVGAIMAGVALKGEFARIAK 171


>ref|ZP_02884834.1| putative excinuclease, ATPase subunit [Burkholderia graminis C4D1M]
 gb|EDT09628.1| putative excinuclease, ATPase subunit [Burkholderia graminis C4D1M]
          Length = 147

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 71/142 (50%), Positives = 95/142 (66%), Gaps = 2/142 (1%)

Query: 11  ISITLALTLALAAALPAQARDTKHLLPLDSTADMKDKEGILDGSVKFYFAGQAHPAVLEK 70
           +S+TLA +  + +A PA ARDT    P++    +  + G +   +  YFAGQ HPAV +K
Sbjct: 6   MSVTLAASFTMLSAAPAFARDTVENYPIEPA--LHSEPGKVSDDIALYFAGQRHPAVAKK 63

Query: 71  IATDVTNQKTNAVGKSDEEACKWVFLSALVQLHKKARELGGNGVVNIVSYYKKNEMASAT 130
           I    TN+KTNA GKSD +AC+ VFLSA+++L  +AR+ GGN V+NI S YK     SAT
Sbjct: 64  IGEFATNKKTNAFGKSDTDACQHVFLSAVIELQDRARKEGGNAVINIKSNYKNEVRESAT 123

Query: 131 QFECHAGATMAGVALKGDIVKL 152
           +F C AGA +AGVALKGD+V L
Sbjct: 124 EFTCGAGAVIAGVALKGDVVTL 145


>ref|YP_004229152.1| excinuclease, ATPase subunit [Burkholderia sp. CCGE1001]
 gb|ADX56092.1| putative excinuclease, ATPase subunit [Burkholderia sp. CCGE1001]
          Length = 150

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 72/145 (49%), Positives = 93/145 (64%), Gaps = 2/145 (1%)

Query: 8   MKTISITLALTLALAAALPAQARDTKHLLPLDSTADMKDKEGILDGSVKFYFAGQAHPAV 67
           M   SI  A +L L +A PA ARDT    P++    +  + G +   +  YFAGQ HPAV
Sbjct: 6   MFVTSIAFAASLTLLSAAPAFARDTVGNYPIEEA--LHSEPGKVGDDIALYFAGQHHPAV 63

Query: 68  LEKIATDVTNQKTNAVGKSDEEACKWVFLSALVQLHKKARELGGNGVVNIVSYYKKNEMA 127
           ++ I    TN+KTNA GKSD  AC+ VFLSA+++L  +AR+ GGN V+NI S YK     
Sbjct: 64  VKTIGEFATNKKTNAFGKSDAAACQHVFLSAVIELQDRARKEGGNAVINIKSNYKNEVRE 123

Query: 128 SATQFECHAGATMAGVALKGDIVKL 152
           SAT+F C AGA +AGVALKGD+V L
Sbjct: 124 SATEFTCGAGAVIAGVALKGDVVTL 148


>ref|YP_003907889.1| putative excinuclease, ATPase subunit [Burkholderia sp. CCGE1003]
 gb|ADN58598.1| putative excinuclease, ATPase subunit [Burkholderia sp. CCGE1003]
          Length = 147

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 68/140 (48%), Positives = 93/140 (66%), Gaps = 2/140 (1%)

Query: 13  ITLALTLALAAALPAQARDTKHLLPLDSTADMKDKEGILDGSVKFYFAGQAHPAVLEKIA 72
           +TLA + ++ +  PA ARDT    P++    +  + G +   +  YFAGQ HPAV++ I 
Sbjct: 8   VTLAASFSMLSTAPALARDTVANYPIEQA--LHSEPGKVSDDIALYFAGQRHPAVVKSIG 65

Query: 73  TDVTNQKTNAVGKSDEEACKWVFLSALVQLHKKARELGGNGVVNIVSYYKKNEMASATQF 132
              TN+KTNA GKSDE AC+ VFLSA+++L ++AR+ GGN V+NI S YK     SAT+F
Sbjct: 66  EFATNKKTNAFGKSDEAACQHVFLSAVIELQERARKEGGNAVINIKSNYKNEVRESATEF 125

Query: 133 ECHAGATMAGVALKGDIVKL 152
            C AGA +AGVALKG +V L
Sbjct: 126 TCGAGAVIAGVALKGAVVTL 145