BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4651.p         (59 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777098.1| exporter protein [Herbaspirillum seropedicae...    59   3e-07

>ref|YP_003777098.1| exporter protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ65190.1| exporter protein [Herbaspirillum seropedicae SmR1]
          Length = 810

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 38/56 (67%)

Query: 2   QQAFVHMVDSAQQKVAVLIGDADWDKAMQAASAYETVIGKQPALLQPLAGDAAQLQ 57
           QQAF HMVDSAQQK+ VL+GD DW +A   A AY TV+     L+ P+  D+AQ Q
Sbjct: 60  QQAFSHMVDSAQQKLVVLVGDRDWKRAQAGAQAYLTVLHAHADLVAPINDDSAQWQ 115