BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4649.p         (202 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777097.1| hypothetical protein Hsero_3711 [Herbaspiril...   212   3e-53
ref|YP_004752551.1| putative transmembrane protein [Collimonas f...   187   1e-45
gb|ADU90649.1| putative outer membrane lipoprotein carrier prote...   171   5e-41
ref|ZP_08274471.1| membrane protein, inferred for ABFAE pathway ...   168   3e-40
ref|YP_001974194.1| putative exported lipoprotein [Stenotrophomo...    94   1e-17

>ref|YP_003777097.1| hypothetical protein Hsero_3711 [Herbaspirillum seropedicae SmR1]
 gb|ADJ65189.1| conserved hypothetical signal peptide protein [Herbaspirillum
           seropedicae SmR1]
          Length = 203

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 124/135 (91%), Positives = 127/135 (94%)

Query: 1   MNARTFLVSLAWLAVLPAAHAAAPVQQIQATLAKPAVMCGRFDQTKQLTGIKKPLQAQGR 60
           MN R+ L SLA LA+LP A AAAPVQQIQATLAKPAVMCGRFDQTKQLTGIKKPLQA GR
Sbjct: 1   MNTRSLLCSLALLALLPTARAAAPVQQIQATLAKPAVMCGRFDQTKQLTGIKKPLQAYGR 60

Query: 61  FCVLKGRGILWQTLQPFPSTLRITREAIVQIQDGRVAMKLDAQQEPVVKMINSVLFSLLA 120
           FCVLKGRGILWQTLQPFPSTLRITR+AIVQIQDGRVAMKLDAQQEPVVKMINSVLFSLLA
Sbjct: 61  FCVLKGRGILWQTLQPFPSTLRITRDAIVQIQDGRVAMKLDAQQEPVVKMINSVLFSLLA 120

Query: 121 GDLSQLDTLFELDGS 135
           GDLSQLD LFELDGS
Sbjct: 121 GDLSQLDQLFELDGS 135


>ref|YP_004752551.1| putative transmembrane protein [Collimonas fungivorans Ter331]
 gb|AEK61728.1| Putative transmembrane protein [Collimonas fungivorans Ter331]
          Length = 205

 Score =  187 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 93/135 (68%), Positives = 113/135 (83%), Gaps = 5/135 (3%)

Query: 3   ARTFLVSLAWLAVLPAAHAAAPVQQIQATLAKPAVMCGRFDQTKQLTGIKKPLQAQGRFC 62
           A  FL   AW A+     AAAPV++IQA LA+P V+CGRFDQ+KQL GIKKPL + GRFC
Sbjct: 10  AAVFLSCSAWPAL-----AAAPVEKIQAMLARPPVLCGRFDQSKQLVGIKKPLLSNGRFC 64

Query: 63  VLKGRGILWQTLQPFPSTLRITREAIVQIQDGRVAMKLDAQQEPVVKMINSVLFSLLAGD 122
           V+ G+G+LW+TLQPFP+TLR+ R+ IVQ+Q  RVAM++DA+QEPVV+MINSVLFSLLAGD
Sbjct: 65  VVNGKGVLWRTLQPFPNTLRLKRDEIVQMQGDRVAMRMDAKQEPVVRMINSVLFSLLAGD 124

Query: 123 LSQLDTLFELDGSHQ 137
           LSQLD+LFELDGS Q
Sbjct: 125 LSQLDSLFELDGSVQ 139


>gb|ADU90649.1| putative outer membrane lipoprotein carrier protein LolA
           [Collimonas sp. MPS11E8]
          Length = 205

 Score =  171 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 80/112 (71%), Positives = 101/112 (90%)

Query: 26  QQIQATLAKPAVMCGRFDQTKQLTGIKKPLQAQGRFCVLKGRGILWQTLQPFPSTLRITR 85
           ++IQ+ LA+P ++CGRFDQ+KQL GIKKPL + GRFCV+ G+G+LW+TLQPFP+TLR+ R
Sbjct: 28  EKIQSMLARPPILCGRFDQSKQLVGIKKPLLSNGRFCVVNGKGVLWRTLQPFPNTLRLKR 87

Query: 86  EAIVQIQDGRVAMKLDAQQEPVVKMINSVLFSLLAGDLSQLDTLFELDGSHQ 137
           + IVQ+Q  RVAM++DA+QEPVV+MINSVLFSLLAGDLSQL+TLFELDGS Q
Sbjct: 88  DEIVQMQGDRVAMRMDAKQEPVVRMINSVLFSLLAGDLSQLETLFELDGSVQ 139


>ref|ZP_08274471.1| membrane protein, inferred for ABFAE pathway [Oxalobacteraceae
           bacterium IMCC9480]
 gb|EGF32054.1| membrane protein, inferred for ABFAE pathway [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 981

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 96/185 (51%), Positives = 125/185 (67%), Gaps = 20/185 (10%)

Query: 15  VLPAAHAAAPVQQIQATLAKPAVMCGRFDQTKQLTGIKKPLQAQGRFCVLKGRGILWQTL 74
           V    +AAAP+ +IQ+ L++P ++CGRFDQT+QLTG++KPL + GRFCV+ G+G+LW+T+
Sbjct: 11  VCGGVNAAAPIAEIQSMLSRPDILCGRFDQTRQLTGMRKPLASNGRFCVVAGKGVLWRTV 70

Query: 75  QPFPSTLRITREAIVQIQDGRVAMKLDAQQEPVVKMINSVLFSLLAGDLSQLDTLFELDG 134
           QPFPSTLR+TR+ IV  Q GRVAM+LDA+QEP V+ INSVLF+LLAGDLSQLD+LF ++G
Sbjct: 71  QPFPSTLRLTRDEIVHFQGGRVAMRLDARQEPTVRGINSVLFALLAGDLSQLDSLFVVEG 130

Query: 135 SHQERQLECRPQGARTGPGQSHRRYPARRRRL---------RQQGDHAGSLG-RPYRDRV 184
           S        R Q A T       R PA  + +          +   HAG    RP   RV
Sbjct: 131 SADAG----RWQVALTA------REPALAKAIGAITLDGCRERPAHHAGRWQRRPDPHRV 180

Query: 185 LGHPD 189
           LG PD
Sbjct: 181 LGDPD 185


>ref|YP_001974194.1| putative exported lipoprotein [Stenotrophomonas maltophilia K279a]
 emb|CAQ47918.1| putative exported lipoprotein [Stenotrophomonas maltophilia K279a]
          Length = 209

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/127 (37%), Positives = 83/127 (65%), Gaps = 2/127 (1%)

Query: 13  LAVLPAAHAAAP-VQQIQATLAKPAVMCGRFDQTKQLTGIKKPLQAQGRFCVLKGRGILW 71
           L   P   AA P +  I   +A+P V+ G+F Q KQ++G + PL++QGRF V +  G++W
Sbjct: 17  LVAAPRVQAADPAIDAITQAVARPDVLRGQFTQEKQVSGFRNPLRSQGRFVVARQHGVIW 76

Query: 72  QTLQPFPSTLRITREAIVQIQ-DGRVAMKLDAQQEPVVKMINSVLFSLLAGDLSQLDTLF 130
            TL+PFPS + +T + I+  Q DG   ++LDA+Q+P ++ +N+++F+L++GD+  L + F
Sbjct: 77  TTLKPFPSEVVVTADRILSRQRDGSTRVELDARQQPAMRSVNAIMFALMSGDVQALSSQF 136

Query: 131 ELDGSHQ 137
            +  S +
Sbjct: 137 NVAASRE 143