BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4646.p (538 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777095.1| histidine ammonia-lyase [Herbaspirillum sero... 986 0.0 gb|ADU90651.1| putative histidine ammonia lyase [Collimonas sp. ... 758 0.0 ref|ZP_08274473.1| phenylalanine ammonia-lyase/histidase family ... 756 0.0 ref|YP_004794501.1| histidine ammonia-lyase [Burkholderia sp. JV... 703 0.0 ref|YP_002030299.1| Histidine ammonia-lyase [Stenotrophomonas ma... 701 0.0 >ref|YP_003777095.1| histidine ammonia-lyase [Herbaspirillum seropedicae SmR1] gb|ADJ65187.1| histidine ammonia-lyase protein [Herbaspirillum seropedicae SmR1] Length = 526 Score = 986 bits (2550), Expect = 0.0, Method: Composition-based stats. Identities = 504/526 (95%), Positives = 516/526 (98%) Query: 13 MPHTDVSSSASSSPIRFGAQPLSIEDVVALARRERTAQLHDADSFRARIARGADFLDRLL 72 MPHTD++SSASS+PIRFGAQPL+IEDVVALARRER+AQLHDA FRARIARGADFLDRLL Sbjct: 1 MPHTDLTSSASSTPIRFGAQPLAIEDVVALARRERSAQLHDAPDFRARIARGADFLDRLL 60 Query: 73 REDGTIYGVTTGYGDSCTVTVPPELVPELPHHLYTYHGCGLGALFTPEQSRAILAARLNS 132 REDGTIYGVTTGYGDSCTVTVPPELVPELPHHLYTYHGCGLGALFTPEQ+RAILAARLNS Sbjct: 61 REDGTIYGVTTGYGDSCTVTVPPELVPELPHHLYTYHGCGLGALFTPEQARAILAARLNS 120 Query: 133 LCQGFSGVSVALLEQITALLHHDLLPQIPCEGSVGASGDLTPLSYLAAVLCGERQVWRDG 192 LCQGFSGVSVALLEQIT LL HDLLPQIPCEGSVGASGDLTPLSYLAAVLCGER VWR+G Sbjct: 121 LCQGFSGVSVALLEQITGLLQHDLLPQIPCEGSVGASGDLTPLSYLAAVLCGERDVWREG 180 Query: 193 ATVPAAEALAGAGMTPLRLRPKEGLAIMNGTAVMTALACLAFDRARYLCQLATRITAMSS 252 ATVPAA+ALA AGMTPLRLRPKEGLAIMNGTAVMTALACLAFDRARYLCQLATRITAMSS Sbjct: 181 ATVPAAQALAAAGMTPLRLRPKEGLAIMNGTAVMTALACLAFDRARYLCQLATRITAMSS 240 Query: 253 FTLDGNAHHFDATLFSAKPHPGQQQVAGWLQRDLPCGQAHRNEKRLQDRYSVRCAPHVIG 312 FTLDGNAHHFDATLFSAKPHPGQQQVA WLQRDLPCGQAHRNEKRLQDRYSVRCAPHVIG Sbjct: 241 FTLDGNAHHFDATLFSAKPHPGQQQVAAWLQRDLPCGQAHRNEKRLQDRYSVRCAPHVIG 300 Query: 313 VLNDALPSLRQFIENELNSANDNPLIDPDGERVLHGGHFYGGHIAFAMDSMKTAVANIAD 372 VLNDALPSLRQFIENELNSANDNPLIDPDGERVLHGGHFYGGHIAFAMDSMKTAVAN+AD Sbjct: 301 VLNDALPSLRQFIENELNSANDNPLIDPDGERVLHGGHFYGGHIAFAMDSMKTAVANVAD 360 Query: 373 LLDRQMALMVDQRYNNGLPANLSGASGARAPINHGLKALQISASAWTAEALKLTMPASVF 432 LLDRQMALMVDQRYNNGLPANLSGA GARAPINHGLKALQISASAWTAEALKLTMPASVF Sbjct: 361 LLDRQMALMVDQRYNNGLPANLSGAQGARAPINHGLKALQISASAWTAEALKLTMPASVF 420 Query: 433 SRSTECHNQDKVSMGTIAARDCLRVLELTEQVAAALLITVRQGVWLRSQRQQAGDTPLQD 492 SRSTECHNQDKVSMGTIAARDCLRVLELTEQVAAALLITVRQGVWLRSQRQQ GDTPLQD Sbjct: 421 SRSTECHNQDKVSMGTIAARDCLRVLELTEQVAAALLITVRQGVWLRSQRQQVGDTPLQD 480 Query: 493 LPAGRLAAMQAALAEDIAMVDEDRMLEPDLRLLLQRIRAQAWSLYE 538 LPAGRLAAMQAAL+EDIA+V EDRMLEPDLRLLLQRIRAQAWSLY+ Sbjct: 481 LPAGRLAAMQAALSEDIAVVAEDRMLEPDLRLLLQRIRAQAWSLYD 526 >gb|ADU90651.1| putative histidine ammonia lyase [Collimonas sp. MPS11E8] Length = 529 Score = 758 bits (1957), Expect = 0.0, Method: Composition-based stats. Identities = 399/528 (75%), Positives = 440/528 (83%), Gaps = 12/528 (2%) Query: 17 DVSSSASSSP------IRFGAQPLSIEDVVALARRERTAQLHDADSFRARIARGADFLDR 70 D+S+ +P + F L+IED+V +A L D +FRA I+RGADFLDR Sbjct: 8 DLSAKVQPTPAPTQRAVCFDQGRLTIEDIVDIASGSAKVVLSDEPAFRAAISRGADFLDR 67 Query: 71 LLREDGTIYGVTTGYGDSCTVTVPPELVPELPHHLYTYHGCGLGALFTPEQSRAILAARL 130 LLREDGTIYGVTTGYGDSCTVTVPPEL+ ELPHHLYTYHGCGLG LF+P Q+RAI+AARL Sbjct: 68 LLREDGTIYGVTTGYGDSCTVTVPPELIAELPHHLYTYHGCGLGELFSPAQTRAIMAARL 127 Query: 131 NSLCQGFSGVSVALLEQITALLHHDLLPQIPCEGSVGASGDLTPLSYLAAVLCGERQVWR 190 SL +G+SGVSV LLEQIT LL DLLP IP EGSVGASGDLTPLSYLAAVLCGER+VWR Sbjct: 128 ASLSKGYSGVSVGLLEQITRLLKEDLLPLIPSEGSVGASGDLTPLSYLAAVLCGEREVWR 187 Query: 191 DGATVPAAEALAGAGMTPLRLRPKEGLAIMNGTAVMTALACLAFDRARYLCQLATRITAM 250 DG V AAEALA AG+TPLRLRPKEGLAIMNGTAVMTALACLA+DRA+YL ++ATRITAM Sbjct: 188 DGVKVGAAEALATAGITPLRLRPKEGLAIMNGTAVMTALACLAYDRAQYLLRIATRITAM 247 Query: 251 SSFTLDGNAHHFDATLFSAKPHPGQQQVAGWLQRDLPCGQAHRNEKRLQDRYSVRCAPHV 310 +SF LDGNAHHFDATLFS KPH GQQQVA WL+ DLP +A RN++RLQDRYS+RCAPHV Sbjct: 248 ASFALDGNAHHFDATLFSVKPHAGQQQVAAWLRLDLPVDEAPRNQQRLQDRYSIRCAPHV 307 Query: 311 IGVLNDALPSLRQFIENELNSANDNPLIDPDGERVLHGGHFYGGHIAFAMDSMKTAVANI 370 IGVL DALP +R+ IENELNSANDNP+ID + ERVLHGGHFYGGHIAFAMDSMK AVAN+ Sbjct: 308 IGVLADALPWMRESIENELNSANDNPIIDAENERVLHGGHFYGGHIAFAMDSMKNAVANV 367 Query: 371 ADLLDRQMALMVDQRYNNGLPANLSGASGARAPINHGLKALQISASAWTAEALKLTMPAS 430 ADLLDRQMAL+VD RYN+GLPANLSGA G RA INHGLKALQISASAWTAEALK TMPAS Sbjct: 368 ADLLDRQMALLVDSRYNHGLPANLSGAEGPRASINHGLKALQISASAWTAEALKQTMPAS 427 Query: 431 VFSRSTECHNQDKVSMGTIAARDCLRVLELTEQVAAALLITVRQGVWLRSQRQQAGDTPL 490 VFSRSTECHNQDKVSMGTIAARDCLRVL+LTEQV AALLI+VRQGVWLRS+ A Sbjct: 428 VFSRSTECHNQDKVSMGTIAARDCLRVLQLTEQVVAALLISVRQGVWLRSRLDGAAQ--- 484 Query: 491 QDLPAGRLAAMQAALAEDIAMVDEDRMLEPDLRLLLQRIRAQAWSLYE 538 P L M LA DIA++ EDRMLEPDLR LL+RIR + W LYE Sbjct: 485 ---PQQNLQQMMEWLAADIAVIQEDRMLEPDLRRLLERIRLKQWQLYE 529 >ref|ZP_08274473.1| phenylalanine ammonia-lyase/histidase family protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF32056.1| phenylalanine ammonia-lyase/histidase family protein [Oxalobacteraceae bacterium IMCC9480] Length = 513 Score = 756 bits (1953), Expect = 0.0, Method: Composition-based stats. Identities = 398/511 (77%), Positives = 426/511 (83%), Gaps = 6/511 (1%) Query: 27 IRFGAQPLSIEDVVALARRERTAQLHDADSFRARIARGADFLDRLLREDGTIYGVTTGYG 86 IRF LSI+D+VALA A L D FRA IARGADFLDRLLREDG IYGVTTGYG Sbjct: 8 IRFDRGHLSIDDIVALAGGRARAALSDDPEFRAAIARGADFLDRLLREDGAIYGVTTGYG 67 Query: 87 DSCTVTVPPELVPELPHHLYTYHGCGLGALFTPEQSRAILAARLNSLCQGFSGVSVALLE 146 DSCTV + PELV ELPHHL T+HG GLGA FTP Q+RA++A RL SLC+G+SGVSV LLE Sbjct: 68 DSCTVAIAPELVAELPHHLVTFHGVGLGAYFTPAQTRAVMAVRLASLCKGYSGVSVGLLE 127 Query: 147 QITALLHHDLLPQIPCEGSVGASGDLTPLSYLAAVLCGERQVWRDGATVPAAEALAGAGM 206 QI LL DLLP IP EGSVGASGDLTPLSYLAAVLCGER+VWRDG VPA +AL AG+ Sbjct: 128 QIVRLLVADLLPLIPSEGSVGASGDLTPLSYLAAVLCGEREVWRDGVQVPAEQALREAGI 187 Query: 207 TPLRLRPKEGLAIMNGTAVMTALACLAFDRARYLCQLATRITAMSSFTLDGNAHHFDATL 266 TPLRLRPKEGLAIMNGTA MTALACLA+DRA YL QL TRITA++SF LDGN HHFDATL Sbjct: 188 TPLRLRPKEGLAIMNGTAAMTALACLAYDRAAYLTQLCTRITALASFALDGNPHHFDATL 247 Query: 267 FSAKPHPGQQQVAGWLQRDLPCGQAHRNEKRLQDRYSVRCAPHVIGVLNDALPSLRQFIE 326 FS KPH G QQVAGWL++DL A RN KRLQDRYS+RCAPHVIGVL DALP RQ IE Sbjct: 248 FSVKPHAGMQQVAGWLRQDLSQAPAERNGKRLQDRYSIRCAPHVIGVLTDALPFFRQSIE 307 Query: 327 NELNSANDNPLIDPDGERVLHGGHFYGGHIAFAMDSMKTAVANIADLLDRQMALMVDQRY 386 NELNSANDNP+ID +GERVLHGGHFYGGHIAFAMDSMK AVAN+ADLLDRQMAL+VD RY Sbjct: 308 NELNSANDNPIIDAEGERVLHGGHFYGGHIAFAMDSMKNAVANLADLLDRQMALLVDSRY 367 Query: 387 NNGLPANLSGASGARAPINHGLKALQISASAWTAEALKLTMPASVFSRSTECHNQDKVSM 446 N+GLPANLSGA G RA INHGLKALQISASAWTAEALKLTMPASVFSRSTECHNQDKVSM Sbjct: 368 NHGLPANLSGAEGPRAAINHGLKALQISASAWTAEALKLTMPASVFSRSTECHNQDKVSM 427 Query: 447 GTIAARDCLRVLELTEQVAAALLITVRQGVWLRSQRQQAGDTPLQDLPAGRLAAMQAALA 506 GTIAARDCLRVLELTEQV AALLITV QGVWLR + Q DT LP L M A L Sbjct: 428 GTIAARDCLRVLELTEQVVAALLITVHQGVWLRCKLQP--DT----LPEAPLQQMMAQLG 481 Query: 507 EDIAMVDEDRMLEPDLRLLLQRIRAQAWSLY 537 DIA+V EDR LEPDLR LL+RIR+QAW+LY Sbjct: 482 ADIAVVAEDRRLEPDLRRLLERIRSQAWTLY 512 >ref|YP_004794501.1| histidine ammonia-lyase [Burkholderia sp. JV3] gb|AEM53275.1| Histidine ammonia-lyase [Burkholderia sp. JV3] Length = 516 Score = 703 bits (1815), Expect = 0.0, Method: Composition-based stats. Identities = 366/510 (71%), Positives = 410/510 (80%), Gaps = 6/510 (1%) Query: 28 RFGAQPLSIEDVVALARRERTAQLHDADSFRARIARGADFLDRLLREDGTIYGVTTGYGD 87 RFG PL+IEDVVALA+R+ A L DA +FRA I RGADFLDRLLREDG IYGVTTGYGD Sbjct: 10 RFGDAPLTIEDVVALAQRQCEAALSDAPAFRAHIQRGADFLDRLLREDGVIYGVTTGYGD 69 Query: 88 SCTVTVPPELVPELPHHLYTYHGCGLGALFTPEQSRAILAARLNSLCQGFSGVSVALLEQ 147 SCTV +PP LV ELPHHLYTYHGCGLG P ++RA+LAARL SL +G SGVSV LLE Sbjct: 70 SCTVNIPPALVAELPHHLYTYHGCGLGRYLDPVETRAVLAARLASLVRGMSGVSVPLLEG 129 Query: 148 ITALLHHDLLPQIPCEGSVGASGDLTPLSYLAAVLCGERQVWRDGATVPAAEALAGAGMT 207 + LL HD+LP IP EGSVGASGDLTPLSY+AAVLCGER+V DG PAAE LA GMT Sbjct: 130 LATLLQHDVLPMIPAEGSVGASGDLTPLSYVAAVLCGEREVLHDGRVRPAAEVLAKIGMT 189 Query: 208 PLRLRPKEGLAIMNGTAVMTALACLAFDRARYLCQLATRITAMSSFTLDGNAHHFDATLF 267 PL+LRPKEGLAIMNGTAVMT LACLA+ RA YL ++ATR+TA + DGNAHHFD TLF Sbjct: 190 PLKLRPKEGLAIMNGTAVMTGLACLAWQRADYLARMATRLTAFNVLASDGNAHHFDETLF 249 Query: 268 SAKPHPGQQQVAGWLQRDLPCGQAHRNEKRLQDRYSVRCAPHVIGVLNDALPSLRQFIEN 327 +AKPHPGQ ++A L+ DL + RNE+RLQDRYS+RCAPHVIGVL D+LP LRQ IE Sbjct: 250 AAKPHPGQGRIAARLRSDLHSERPPRNEQRLQDRYSLRCAPHVIGVLEDSLPFLRQLIET 309 Query: 328 ELNSANDNPLIDPDGERVLHGGHFYGGHIAFAMDSMKTAVANIADLLDRQMALMVDQRYN 387 ELNSANDNPLID DGER+LHGGHFYGGHIA AMD++K VAN+ADLLDRQ+AL+VD RYN Sbjct: 310 ELNSANDNPLIDADGERILHGGHFYGGHIALAMDTLKNTVANVADLLDRQLALVVDARYN 369 Query: 388 NGLPANLSGASGARAPINHGLKALQISASAWTAEALKLTMPASVFSRSTECHNQDKVSMG 447 +GLPANLS A+G RA INHGLKALQIS SAWTAEALK TMPASVFSRSTECHNQDKVSMG Sbjct: 370 HGLPANLSAATGPRAAINHGLKALQISVSAWTAEALKQTMPASVFSRSTECHNQDKVSMG 429 Query: 448 TIAARDCLRVLELTEQVAAALLITVRQGVWLRSQRQQAGDTPLQDLPAGRLAAMQAALAE 507 TIAARDCLRV+ELTEQV AA+LI RQG+ LR + L G LA M A L + Sbjct: 430 TIAARDCLRVIELTEQVVAAMLIAARQGLALRER------VGLNAQLHGSLADMYADLGQ 483 Query: 508 DIAMVDEDRMLEPDLRLLLQRIRAQAWSLY 537 IA+V+EDR L+ +LR LL IRAQ W LY Sbjct: 484 RIALVEEDRALDRELRELLVEIRAQRWELY 513 >ref|YP_002030299.1| Histidine ammonia-lyase [Stenotrophomonas maltophilia R551-3] gb|ACF53616.1| Histidine ammonia-lyase [Stenotrophomonas maltophilia R551-3] Length = 516 Score = 701 bits (1808), Expect = 0.0, Method: Composition-based stats. Identities = 364/510 (71%), Positives = 409/510 (80%), Gaps = 6/510 (1%) Query: 28 RFGAQPLSIEDVVALARRERTAQLHDADSFRARIARGADFLDRLLREDGTIYGVTTGYGD 87 RFG PL+IEDVVALA+R+ A L DA FRA I RGADFLDRLLREDG IYGVTTGYGD Sbjct: 10 RFGDAPLTIEDVVALAQRQCDAALSDAPVFRAHIQRGADFLDRLLREDGVIYGVTTGYGD 69 Query: 88 SCTVTVPPELVPELPHHLYTYHGCGLGALFTPEQSRAILAARLNSLCQGFSGVSVALLEQ 147 SCTV +PP LV ELPHHLYTYHGCGLG P ++RA+LAARL SL +G SGVSV LLE Sbjct: 70 SCTVNIPPALVAELPHHLYTYHGCGLGRYLDPVETRAVLAARLASLVRGMSGVSVPLLEG 129 Query: 148 ITALLHHDLLPQIPCEGSVGASGDLTPLSYLAAVLCGERQVWRDGATVPAAEALAGAGMT 207 + LL HD+LP IP EGSVGASGDLTPLSY+AAVLCGER+V DG PAA+ LA GMT Sbjct: 130 LATLLQHDVLPMIPAEGSVGASGDLTPLSYVAAVLCGEREVLHDGRVQPAADVLAKIGMT 189 Query: 208 PLRLRPKEGLAIMNGTAVMTALACLAFDRARYLCQLATRITAMSSFTLDGNAHHFDATLF 267 PL+LRPKEGLAIMNGTAVMT LACLA+ RA YL ++ATR+TA + DGNAHHFD TLF Sbjct: 190 PLKLRPKEGLAIMNGTAVMTGLACLAWQRADYLARMATRLTAFNVLASDGNAHHFDETLF 249 Query: 268 SAKPHPGQQQVAGWLQRDLPCGQAHRNEKRLQDRYSVRCAPHVIGVLNDALPSLRQFIEN 327 +AKPHPGQ ++A L+ DL + RNE+RLQDRYS+RCAPHVIGVL D+LP LRQ IE Sbjct: 250 AAKPHPGQGRIAARLRSDLHSERPPRNEQRLQDRYSLRCAPHVIGVLEDSLPFLRQLIET 309 Query: 328 ELNSANDNPLIDPDGERVLHGGHFYGGHIAFAMDSMKTAVANIADLLDRQMALMVDQRYN 387 ELNSANDNPLID DGER+LHGGHFYGGHIA AMD++K VAN+ADLLDRQ+AL+VD RYN Sbjct: 310 ELNSANDNPLIDADGERILHGGHFYGGHIALAMDTLKNTVANVADLLDRQLALVVDARYN 369 Query: 388 NGLPANLSGASGARAPINHGLKALQISASAWTAEALKLTMPASVFSRSTECHNQDKVSMG 447 +GLPANLS A+G RA INHGLKALQIS SAWTAEALK TMPASVFSRSTECHNQDKVSMG Sbjct: 370 HGLPANLSAATGPRAAINHGLKALQISVSAWTAEALKQTMPASVFSRSTECHNQDKVSMG 429 Query: 448 TIAARDCLRVLELTEQVAAALLITVRQGVWLRSQRQQAGDTPLQDLPAGRLAAMQAALAE 507 TIAARDCLRV+ELTEQV AA+L+ RQG+ LR + L G LA M A L + Sbjct: 430 TIAARDCLRVIELTEQVVAAMLVAARQGLALRER------VGLNAQLHGSLADMYADLGQ 483 Query: 508 DIAMVDEDRMLEPDLRLLLQRIRAQAWSLY 537 IA+V+EDR L+ +LR LL IRAQ W LY Sbjct: 484 RIALVEEDRALDRELRELLVEIRAQRWELY 513