BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4624.p         (101 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777074.1| integration host factor subunit beta [Herbas...   178   3e-43
ref|YP_004754394.1| integration host factor subunit beta [Collim...   176   1e-42
ref|YP_001100816.1| integration host factor subunit beta [Hermin...   173   7e-42
ref|ZP_08274482.1| Integration host factor beta subunit [Oxaloba...   158   2e-37
ref|YP_001856982.1| integration host factor subunit beta [Burkho...   150   6e-35

>ref|YP_003777074.1| integration host factor subunit beta [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ65166.1| integration host factor beta-subunit (IHF-beta) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 101

 Score =  178 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MTKSELIARLAERYPQLVAKDADYAVKTILDAMVDALATGQRIEIRGFGSFALNRRPPRI 60
           MTKSELIARLAERYPQLVAKDADYAVKTILDAMVDALATGQRIEIRGFGSFALNRRPPRI
Sbjct: 1   MTKSELIARLAERYPQLVAKDADYAVKTILDAMVDALATGQRIEIRGFGSFALNRRPPRI 60

Query: 61  GRNPKSGDKVMVPEKRVPHFKPGKELRERVDAMVGQPIRED 101
           GRNPKSGDKVMVPEKRVPHFKPGKELRERVDAMVGQPIRED
Sbjct: 61  GRNPKSGDKVMVPEKRVPHFKPGKELRERVDAMVGQPIRED 101


>ref|YP_004754394.1| integration host factor subunit beta [Collimonas fungivorans
           Ter331]
 gb|AEK63571.1| Integration host factor beta subunit [Collimonas fungivorans
           Ter331]
          Length = 101

 Score =  176 bits (445), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 99/101 (98%), Positives = 100/101 (99%)

Query: 1   MTKSELIARLAERYPQLVAKDADYAVKTILDAMVDALATGQRIEIRGFGSFALNRRPPRI 60
           MTKSELIARLAERYPQLVAKDADYAVKTILDAM DAL+TGQRIEIRGFGSFALNRRPPRI
Sbjct: 1   MTKSELIARLAERYPQLVAKDADYAVKTILDAMADALSTGQRIEIRGFGSFALNRRPPRI 60

Query: 61  GRNPKSGDKVMVPEKRVPHFKPGKELRERVDAMVGQPIRED 101
           GRNPKSGDKVMVPEKRVPHFKPGKELRERVDAMVGQPIRED
Sbjct: 61  GRNPKSGDKVMVPEKRVPHFKPGKELRERVDAMVGQPIRED 101


>ref|YP_001100816.1| integration host factor subunit beta [Herminiimonas arsenicoxydans]
 ref|YP_001354357.1| integration host factor subunit beta [Janthinobacterium sp.
           Marseille]
 sp|A4G858|IHFB_HERAR RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 sp|A6T1G0|IHFB_JANMA RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 emb|CAL62695.1| Integration host factor subunit beta (IHF-beta) [Herminiimonas
           arsenicoxydans]
 gb|ABR89250.1| integration host factor beta-subunit [Janthinobacterium sp.
           Marseille]
          Length = 101

 Score =  173 bits (439), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 97/101 (96%), Positives = 98/101 (97%)

Query: 1   MTKSELIARLAERYPQLVAKDADYAVKTILDAMVDALATGQRIEIRGFGSFALNRRPPRI 60
           MTKSELIARLAERYPQLVAKDADYAVKTILDAM DALATGQRIEIRGFGSFALN RPPRI
Sbjct: 1   MTKSELIARLAERYPQLVAKDADYAVKTILDAMSDALATGQRIEIRGFGSFALNSRPPRI 60

Query: 61  GRNPKSGDKVMVPEKRVPHFKPGKELRERVDAMVGQPIRED 101
           GRNPKSGDKVMVPEKRVPHFKPGK+LRERVDAMVGQPI ED
Sbjct: 61  GRNPKSGDKVMVPEKRVPHFKPGKQLRERVDAMVGQPIIED 101


>ref|ZP_08274482.1| Integration host factor beta subunit [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF32042.1| Integration host factor beta subunit [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 92

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 86/92 (93%), Positives = 90/92 (97%)

Query: 10  LAERYPQLVAKDADYAVKTILDAMVDALATGQRIEIRGFGSFALNRRPPRIGRNPKSGDK 69
           +AERYPQLVAKDADYAVKTILDAM+DALATGQRIEIRGFGSF+LN RPPRIGRNPKSG+K
Sbjct: 1   MAERYPQLVAKDADYAVKTILDAMIDALATGQRIEIRGFGSFSLNSRPPRIGRNPKSGEK 60

Query: 70  VMVPEKRVPHFKPGKELRERVDAMVGQPIRED 101
           VMVPEKRVPHFKPGKELRERVDAMVGQPI ED
Sbjct: 61  VMVPEKRVPHFKPGKELRERVDAMVGQPIIED 92


>ref|YP_001856982.1| integration host factor subunit beta [Burkholderia phymatum STM815]
 sp|B2JF07|IHFB_BURP8 RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gb|ACC69936.1| integration host factor, beta subunit [Burkholderia phymatum
           STM815]
          Length = 107

 Score =  150 bits (379), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 78/101 (77%), Positives = 89/101 (88%)

Query: 1   MTKSELIARLAERYPQLVAKDADYAVKTILDAMVDALATGQRIEIRGFGSFALNRRPPRI 60
           MTKSEL+A+LA R+PQLV KDAD+AVKT+LDAM DALA G RIEIRGFGSF LNRRP R+
Sbjct: 1   MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSDALANGHRIEIRGFGSFGLNRRPSRV 60

Query: 61  GRNPKSGDKVMVPEKRVPHFKPGKELRERVDAMVGQPIRED 101
           GRNPKSG+KV+VPEK VPHFKPGKELRERVD   G+P++ D
Sbjct: 61  GRNPKSGEKVLVPEKHVPHFKPGKELRERVDRNAGEPLKAD 101