BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4618.p         (519 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAJ35285.1| hypothetical protein STMDT12_C03420 [Salmonella ...    59   3e-06

>dbj|BAJ35285.1| hypothetical protein STMDT12_C03420 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
          Length = 139

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 58/115 (50%)

Query: 396 EHRLMQPGLAEICPGQIGPAEIAMRGSTTRRLHSRHRSLGKNGVVQHRIRQLRQGEIGSG 455
           E  + Q G+A++   Q+G A++      T ++ +      + G VQ    Q+   ++G+ 
Sbjct: 25  ESEIRQVGIAQVGTAQVGIAQVGTAQVGTVQVGTVQVGTAQVGTVQVGTAQVGTVQVGTA 84

Query: 456 EIALLHASTRQTGLGELGPARAGLRQVGIAEVGLAAVGTLHEASRQVRMGQAATH 510
           ++  +   T Q G  ++G  + G  QVGIA+VG A VGT+   + QV    A TH
Sbjct: 85  QVGTVQVGTVQVGTAQVGTVQVGTAQVGIAQVGTAQVGTVQVGTVQVGSRSALTH 139