BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4617.p (527 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_439059.1| pentapeptide repeat-containing protein [Burkhol... 228 3e-57 ref|ZP_04520313.1| pentapeptide repeat protein [Burkholderia pse... 197 5e-48 ref|ZP_04968934.1| pentapeptide repeat protein [Burkholderia pse... 197 5e-48 ref|ZP_01768664.1| pentapeptide repeat protein [Burkholderia pse... 197 5e-48 ref|ZP_03456778.1| pentapeptide repeat protein [Burkholderia pse... 196 6e-48 >ref|YP_439059.1| pentapeptide repeat-containing protein [Burkholderia thailandensis E264] ref|ZP_05590429.1| pentapeptide repeat-containing protein [Burkholderia thailandensis E264] gb|ABC35832.1| pentapeptide repeat family protein [Burkholderia thailandensis E264] Length = 872 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 203/545 (37%), Positives = 268/545 (49%), Gaps = 31/545 (5%) Query: 8 AAAAAPFPELGEAQQAIIQLERETAELMQRFGITPADLAALEPPPAVPADVSIAEAERAI 67 ++A P P+L ++ L +T L+ G+T AD+A L PP PAD+++ E Sbjct: 331 SSAEPPAPDLSALERDAAALAAQTDALLAAAGLTEADVARLLPPRDAPADMTLDELTALA 390 Query: 68 ADLERETQTLMRQHNLSEADALKMEVPQAPPGSGSLAEAKASVLDLQRSSQELMR----Q 123 A+L+ T Q++ + A+ + P +P S A AS+ DL R + +R Q Sbjct: 391 AELDARTAQWQAQYDAAAAERDEASSPASP---NSAAAHDASLADLLRQADAQIRALVDQ 447 Query: 124 HKLSEADIEKFAATRP-------------------GAEPGEALFGTDVEALLQNVPDALP 164 H LS A +E A RP G A D EA+++ A P Sbjct: 448 HGLSRAQMEAAARDRPELAALADALDALDAPLDIDALTAGLAAPAGD-EAIVEPDAPAGP 506 Query: 165 DWPEVSMLPPAAATQALAAVAIPTLAQAPAALPKLTREQVIELHTAKHSLRGYDLCGVDL 224 D P + P A ++ A A P+ AP A P LTREQVIE H G DL G+DL Sbjct: 507 DRPAGADRPADGAPASMHAAA-PSAGDAPPAEP-LTREQVIERHARGLGFAGLDLSGLDL 564 Query: 225 SKLDLGAADFSGSLLEGTVFVGSRLAHADLSACLMQGADCSEADFSNANLAQASAGGAKF 284 S L AD + +E T F G RL A L+ AD S AD A ASA GA F Sbjct: 565 SSAALERADLRDARIERTCFAGCRLRGASFERALLSRADFSNADLREATFVDASAPGASF 624 Query: 285 AKARLPGARMQEGDFTGADFTLAQLPNAVLDDAIFSQAAMSGVQAAGCTATHGNFSRADL 344 A L AR+ DFTGADFT A L + A F ++AM+ + AA H +F+ L Sbjct: 625 RGAALDRARLAHADFTGADFTRASLADGHCAHARFDESAMTQLAAARLDGAHASFAGCAL 684 Query: 345 SGADFGQARLHQAMFNESKLAASNFKAAYCEEAEFYGADATGAQFVAAIMGSSRADGGSQ 404 ADF AR+ +A F + L A+ F A C+ AE+YGA A+GAQ +A + SRAD + Sbjct: 685 DAADFTSARMPRANFQHATLTAATFAFAQCDGAEWYGAQASGAQLRSASLRGSRADASTS 744 Query: 405 FSHAVFDGAQLQRAAWEGAQLTAARFVGAILDDADFSQVKASGASFRQASARHAKFGRAD 464 F AV GA L A W+G L A A LD A ++ ASGA + AR A +AD Sbjct: 745 FRQAVLSGAALDDANWDGVDLRYANLHKATLDRASLARAIASGAQLTLSLARRADLTKAD 804 Query: 465 LSQADLSGINLFKGSLRKARVEAAVLHFANAYGADLEGCTLRASALEGTHVERTILTV-- 522 L+ AD NL SLR+AR++ L +N YGAD G L S L G +VERT+ V Sbjct: 805 LTHADARFSNLQGASLRRARLDGTQLQSSNLYGADCYGTALGRSQLAGANVERTLFVVPG 864 Query: 523 RPPLA 527 RP LA Sbjct: 865 RPELA 869 >ref|ZP_04520313.1| pentapeptide repeat protein [Burkholderia pseudomallei MSHR346] gb|EEP49227.1| pentapeptide repeat protein [Burkholderia pseudomallei MSHR346] Length = 880 Score = 197 bits (500), Expect = 5e-48, Method: Composition-based stats. Identities = 199/562 (35%), Positives = 264/562 (46%), Gaps = 39/562 (6%) Query: 3 AATVAAAAAAPFPELGEAQQA--IIQLERETAEL-------MQRFGITPADLAALEPPPA 53 +A+ + A + PE EA A + LERETA L + GIT AD+A L P Sbjct: 318 SASASQAHSPAAPEFPEAPHAPDLSALERETAALAGQTDALLAGLGITEADIARLLPARD 377 Query: 54 VPADVSIAEAERAIADLERETQTLMRQHNLS--EADALKMEVPQAPPGSGSLAEAKASVL 111 PA++++ + A+L+ +T Q + E P AP + A +AS+ Sbjct: 378 APAELNLDQLATLAAELDAQTAQWQAQQAAAAVERGDAASATPAAPATPDAEAAHEASLA 437 Query: 112 DLQRSSQELMR----QHKLSEADIEKFAATRPGAEPG----EALFGTDVEALLQNVPDAL 163 DL R + MR QH LS A +E A T P P +AL D + + L Sbjct: 438 DLLRQADAQMRALVEQHGLSRARMEAAARTLPELAPLAGSLDALDALDAPLDVDALTAGL 497 Query: 164 PDWPEVSMLPP----------------AAATQALAAVAIPTLAQAPAALPKLTREQVIEL 207 + P AA ++ A P + AP LTREQVIE Sbjct: 498 AAAGGDAAAEPDTPAEPSPPAPANEFAAAVPAPASSTAAPPVDDAPPG--PLTREQVIER 555 Query: 208 HTAKHSLRGYDLCGVDLSKLDLGAADFSGSLLEGTVFVGSRLAHADLSACLMQGADCSEA 267 H G DL G+DLS L ADF + LE T F G RLA A L+ AD S A Sbjct: 556 HARGLGFAGLDLSGLDLSSAALERADFRRARLERTRFAGCRLAGASFERALLSHADFSNA 615 Query: 268 DFSNANLAQASAGGAKFAKARLPGARMQEGDFTGADFTLAQLPNAVLDDAIFSQAAMSGV 327 D +A A ASA GA + A L R++ GDF+G DF A L ++ A F +AM+ + Sbjct: 616 DLRDAVFAGASAPGASWRGAVLERTRLEHGDFSGGDFAQASLADSHCAHAQFDASAMTAL 675 Query: 328 QAAGCTATHGNFSRADLSGADFGQARLHQAMFNESKLAASNFKAAYCEEAEFYGADATGA 387 AA TH +F+ L ADF A L +A F + LA + A+C+ AE+YGA A A Sbjct: 676 VAARIDGTHASFAGCTLDAADFTSAHLPRANFQHATLADAALACAHCDGAEWYGAQAPRA 735 Query: 388 QFVAAIMGSSRADGGSQFSHAVFDGAQLQRAAWEGAQLTAARFVGAILDDADFSQVKASG 447 + AA + SRAD + F A A L A W+G L A LD A ++ ASG Sbjct: 736 RLRAASLRGSRADASTSFRQADLSSAALDDANWDGVDLRGTNLHEATLDGASLARANASG 795 Query: 448 ASFRQASARHAKFGRADLSQADLSGINLFKGSLRKARVEAAVLHFANAYGADLEGCTLRA 507 A +A AR A +ADL+ AD NL SLR+AR+ L +N YGAD G L Sbjct: 796 AQLTRARARRADLTQADLTHADARCSNLHGASLRRARLGGTQLQSSNLYGADCYGTALAR 855 Query: 508 SALEGTHVERTILTV--RPPLA 527 L+G ++ERT+L V RP LA Sbjct: 856 PQLDGANIERTLLAVPGRPELA 877 >ref|ZP_04968934.1| pentapeptide repeat protein [Burkholderia pseudomallei 406e] gb|EDO88420.1| pentapeptide repeat protein [Burkholderia pseudomallei 406e] Length = 880 Score = 197 bits (500), Expect = 5e-48, Method: Composition-based stats. Identities = 192/541 (35%), Positives = 257/541 (47%), Gaps = 30/541 (5%) Query: 15 PELGEAQQAIIQLERETAELMQRFGITPADLAALEPPPAVPADVSIAEAERAIADLERET 74 P+L ++ L +T L+ GIT AD+A L P PA++++ + A+L+ +T Sbjct: 339 PDLSALEREAAALAGQTDALLAGLGITEADIARLLPAREAPAELNLDQLATLAAELDAQT 398 Query: 75 QTLMRQHNLS--EADALKMEVPQAPPGSGSLAEAKASVLDLQRSSQELMR----QHKLSE 128 Q ++ E P AP + A +AS+ DL R + MR QH LS Sbjct: 399 AQWQAQQAVAAVERGDAASATPAAPATPDAEAAHEASLADLLRQADAQMRALVEQHGLSR 458 Query: 129 ADIEKFAATRPGAEPG----EALFGTDVEALLQNVPDALPDWPEVSMLPP---------- 174 A +E A T P P +AL D + + L + P Sbjct: 459 ARMEAAARTLPELAPLAGSLDALDALDAPLDVDALTAGLAAAGGDAAAEPDTPAEPSPPA 518 Query: 175 ------AAATQALAAVAIPTLAQAPAALPKLTREQVIELHTAKHSLRGYDLCGVDLSKLD 228 AA ++ A P + AP LTREQVIE H G DL G+DLS Sbjct: 519 PANEFAAAVPAPASSTAAPPVDDAPPG--PLTREQVIERHARGLGFAGLDLSGLDLSSAA 576 Query: 229 LGAADFSGSLLEGTVFVGSRLAHADLSACLMQGADCSEADFSNANLAQASAGGAKFAKAR 288 L ADF + LE T F G RLA A L+ AD S AD +A A ASA GA + A Sbjct: 577 LERADFRRARLERTRFAGCRLAGASFERALLSHADFSNADLRDAVFAGASAPGASWRGAV 636 Query: 289 LPGARMQEGDFTGADFTLAQLPNAVLDDAIFSQAAMSGVQAAGCTATHGNFSRADLSGAD 348 L AR++ GDF+G DF A L ++ A F +AM+ + AA TH +F+ L AD Sbjct: 637 LERARLEHGDFSGGDFAQASLADSHCAHAQFDASAMTALVAARIDGTHASFAGCTLDAAD 696 Query: 349 FGQARLHQAMFNESKLAASNFKAAYCEEAEFYGADATGAQFVAAIMGSSRADGGSQFSHA 408 F ARL +A F + LA + A+C+ AE+YGA A A+ AA + SRAD + F A Sbjct: 697 FTSARLPRANFQHATLADAALACAHCDGAEWYGAQAPRARLRAASLRGSRADASTSFRQA 756 Query: 409 VFDGAQLQRAAWEGAQLTAARFVGAILDDADFSQVKASGASFRQASARHAKFGRADLSQA 468 A L A W+G L A LD A ++ ASGA +A AR A +ADL+ A Sbjct: 757 DLSSAALDDANWDGVDLRGTNLHEATLDGASLARANASGAQLTRARARRADLTQADLTHA 816 Query: 469 DLSGINLFKGSLRKARVEAAVLHFANAYGADLEGCTLRASALEGTHVERTILTV--RPPL 526 D NL SLR+AR+ L +N YGAD G L L+G ++ERT+L V RP L Sbjct: 817 DARCSNLHGASLRRARLGGTQLQSSNLYGADCYGTALARPQLDGANIERTLLAVPGRPEL 876 Query: 527 A 527 A Sbjct: 877 A 877 >ref|ZP_01768664.1| pentapeptide repeat protein [Burkholderia pseudomallei 305] gb|EBA46575.1| pentapeptide repeat protein [Burkholderia pseudomallei 305] Length = 880 Score = 197 bits (500), Expect = 5e-48, Method: Composition-based stats. Identities = 191/541 (35%), Positives = 255/541 (47%), Gaps = 30/541 (5%) Query: 15 PELGEAQQAIIQLERETAELMQRFGITPADLAALEPPPAVPADVSIAEAERAIADLERET 74 P+L ++ L +T L+ GIT AD+A L P PA++++ + A+L+ +T Sbjct: 339 PDLSALEREAAALAGQTDALLAGLGITEADIARLLPAREAPAELNLDQLATLAAELDAQT 398 Query: 75 QTLMRQHNLS--EADALKMEVPQAPPGSGSLAEAKASVLDLQRSSQELMR----QHKLSE 128 Q + E P AP + A +AS+ DL R + MR QH LS Sbjct: 399 AQWQAQQAAAAVERGDAASATPAAPATPDAEAAHEASLADLLRQADAQMRALVEQHGLSR 458 Query: 129 ADIEKFAATRPGAEPG----EALFGTDVEALLQNVPDALPDWPEVSMLPP---------- 174 A +E A T P P +AL D + + L + P Sbjct: 459 ARMEAAARTLPELAPLAGSLDALDALDAPLDVDALTAGLAAAGGDAAAEPDTPAEPSPPA 518 Query: 175 ------AAATQALAAVAIPTLAQAPAALPKLTREQVIELHTAKHSLRGYDLCGVDLSKLD 228 AA ++ A P + AP LTREQVIE H G DL G+DLS Sbjct: 519 PANEFAAAVPAPASSTAAPPVDDAPPG--PLTREQVIERHARGLGFAGLDLSGLDLSSAA 576 Query: 229 LGAADFSGSLLEGTVFVGSRLAHADLSACLMQGADCSEADFSNANLAQASAGGAKFAKAR 288 L ADF + LE T F G RLA A L+ AD S AD +A A ASA GA + A Sbjct: 577 LERADFRHARLERTRFAGCRLAGASFERALLSHADFSNADLRDAVFAGASAPGASWRGAV 636 Query: 289 LPGARMQEGDFTGADFTLAQLPNAVLDDAIFSQAAMSGVQAAGCTATHGNFSRADLSGAD 348 L AR++ GDF+G DF A L ++ A F +AM+ + AA TH +F+ L AD Sbjct: 637 LERARLEHGDFSGGDFAQASLADSHCAHAQFDASAMTALVAARIDGTHASFAGCTLDAAD 696 Query: 349 FGQARLHQAMFNESKLAASNFKAAYCEEAEFYGADATGAQFVAAIMGSSRADGGSQFSHA 408 F ARL +A F + LA + A+C+ AE+YGA A + AA + SRAD + F A Sbjct: 697 FTSARLPRANFQHATLADAALACAHCDGAEWYGAQAPRVRLRAASLRGSRADASTSFRQA 756 Query: 409 VFDGAQLQRAAWEGAQLTAARFVGAILDDADFSQVKASGASFRQASARHAKFGRADLSQA 468 A L A W+G L A LD A ++ ASGA +A AR A +ADL+ A Sbjct: 757 DLSSAALDDANWDGVDLRGTNLHEATLDGASLARANASGAQLTRARARRADLTQADLTHA 816 Query: 469 DLSGINLFKGSLRKARVEAAVLHFANAYGADLEGCTLRASALEGTHVERTILTV--RPPL 526 D NL SLR+AR+ L +N YGAD G L L+G ++ERT+L V RP L Sbjct: 817 DARCSNLHGASLRRARLGGTQLQSSNLYGADCYGTALARPQLDGANIERTLLAVPGRPEL 876 Query: 527 A 527 A Sbjct: 877 A 877 >ref|ZP_03456778.1| pentapeptide repeat protein [Burkholderia pseudomallei 576] gb|EEC31915.1| pentapeptide repeat protein [Burkholderia pseudomallei 576] Length = 880 Score = 196 bits (499), Expect = 6e-48, Method: Composition-based stats. Identities = 194/541 (35%), Positives = 257/541 (47%), Gaps = 30/541 (5%) Query: 15 PELGEAQQAIIQLERETAELMQRFGITPADLAALEPPPAVPADVSIAEAERAIADLERET 74 P+L ++ L +T L+ GIT AD+A L P PA++++ + A+L+ +T Sbjct: 339 PDLSALEREAAALAGQTDALLAGLGITEADIARLLPAREAPAELNLDQLATLAAELDAQT 398 Query: 75 QTLMRQHNLS--EADALKMEVPQAPPGSGSLAEAKASVLDLQRSSQELMR----QHKLSE 128 Q ++ E P AP + A +AS+ DL R + MR QH LS Sbjct: 399 AQWQAQQAVAAVERGDAASATPAAPATPDAEAAHEASLADLLRQADAQMRALVEQHGLSR 458 Query: 129 ADIEKFAATRPGAEPGEALFGT--------DVEALLQNVPDAL------PDWPEVSMLPP 174 A +E A T P P DV+AL + A PD P P Sbjct: 459 ARMEAAARTLPELAPLAGSLDALDALDAPLDVDALTAELAAAGGDAAAEPDTPAEPSPPA 518 Query: 175 AA------ATQALAAVAIPTLAQAPAALPKLTREQVIELHTAKHSLRGYDLCGVDLSKLD 228 A ++ A P + AP LTREQVIE H G DL G+DLS Sbjct: 519 PANEFAAAVPAPASSTAAPPVDDAPPG--PLTREQVIERHARGLGFAGLDLSGLDLSSAA 576 Query: 229 LGAADFSGSLLEGTVFVGSRLAHADLSACLMQGADCSEADFSNANLAQASAGGAKFAKAR 288 L ADF + LE T F G RLA A L+ AD S AD +A A ASA GA + A Sbjct: 577 LERADFRRARLERTRFAGCRLAGASFERALLSHADFSNADLRDAVFAGASAPGASWRGAV 636 Query: 289 LPGARMQEGDFTGADFTLAQLPNAVLDDAIFSQAAMSGVQAAGCTATHGNFSRADLSGAD 348 L AR++ GDF+G DF A L ++ A F +AM+ + AA TH +F+ L AD Sbjct: 637 LERARLEHGDFSGGDFAQASLADSHCAHAQFDASAMTALVAARIDGTHASFAGCTLDAAD 696 Query: 349 FGQARLHQAMFNESKLAASNFKAAYCEEAEFYGADATGAQFVAAIMGSSRADGGSQFSHA 408 F ARL +A F + LA + A+C+ AE+YGA A + AA + SRAD + F A Sbjct: 697 FTSARLPRANFQHATLADAALACAHCDGAEWYGAQAPRVRLRAASLRGSRADASTSFRQA 756 Query: 409 VFDGAQLQRAAWEGAQLTAARFVGAILDDADFSQVKASGASFRQASARHAKFGRADLSQA 468 A L A W+G L A LD A ++ ASGA +A AR A +ADL+ A Sbjct: 757 DLSSAALDDANWDGVDLRGTNLHEATLDGASLARANASGAQLTRARARRADLTQADLTHA 816 Query: 469 DLSGINLFKGSLRKARVEAAVLHFANAYGADLEGCTLRASALEGTHVERTILTV--RPPL 526 D NL SLR+AR+ L +N YGAD G L L+G ++ERT+L V RP L Sbjct: 817 DARCSNLHGASLRRARLGGTQLQSSNLYGADCYGTALARPQLDGANIERTLLAVPGRPEL 876 Query: 527 A 527 A Sbjct: 877 A 877