BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4606.p         (97 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777069.1| DNA uptake protein [Herbaspirillum seropedic...    68   4e-10
ref|YP_001354354.1| hypothetical protein mma_2664 [Janthinobacte...    55   3e-06
ref|ZP_08274487.1| hypothetical protein IMCC9480_3023 [Oxalobact...    55   3e-06
ref|YP_001100812.1| hypothetical protein HEAR2569 [Herminiimonas...    54   9e-06

>ref|YP_003777069.1| DNA uptake protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ65161.1| DNA uptake protein [Herbaspirillum seropedicae SmR1]
          Length = 123

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/64 (71%), Positives = 50/64 (78%)

Query: 1   MSKRILEERQKGGAFKDWADLEKRVKGIKDKAAVKLSANGLTVNGQAKTGAAAPAAKEGK 60
           MSKRILEERQKGGAFKDW DLEKRVKGIKDK+A KLS  GLTVNGQ++ GA A A    K
Sbjct: 43  MSKRILEERQKGGAFKDWGDLEKRVKGIKDKSATKLSGYGLTVNGQSRPGAEAAATTSSK 102

Query: 61  ASRA 64
             + 
Sbjct: 103 PGKG 106


>ref|YP_001354354.1| hypothetical protein mma_2664 [Janthinobacterium sp. Marseille]
 gb|ABR90771.1| Hypothetical protein mma_2664 [Janthinobacterium sp. Marseille]
          Length = 113

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/54 (62%), Positives = 42/54 (77%)

Query: 1  MSKRILEERQKGGAFKDWADLEKRVKGIKDKAAVKLSANGLTVNGQAKTGAAAP 54
          MSK IL+ER+KGG FKDW DL+KRVKG+ +K + KLS  GLTVNG  ++GA  P
Sbjct: 43 MSKAILDERKKGGNFKDWDDLQKRVKGVGEKNSEKLSEAGLTVNGVTRSGATKP 96


>ref|ZP_08274487.1| hypothetical protein IMCC9480_3023 [Oxalobacteraceae bacterium
          IMCC9480]
 gb|EGF32047.1| hypothetical protein IMCC9480_3023 [Oxalobacteraceae bacterium
          IMCC9480]
          Length = 97

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/52 (63%), Positives = 42/52 (80%)

Query: 1  MSKRILEERQKGGAFKDWADLEKRVKGIKDKAAVKLSANGLTVNGQAKTGAA 52
          MS+ IL+ER+KGG FKDW DLE+RVKGIK K+AV+LS  GLTV+G+ +   A
Sbjct: 43 MSQTILDERKKGGNFKDWPDLEQRVKGIKTKSAVRLSEAGLTVDGKPRKAIA 94


>ref|YP_001100812.1| hypothetical protein HEAR2569 [Herminiimonas arsenicoxydans]
 emb|CAL62691.1| Conserved hypothetical protein, putative DNA-binding [Herminiimonas
           arsenicoxydans]
          Length = 121

 Score = 53.9 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 2   SKRILEERQKGGAFKDWADLEKRVKGIKDKAAVKLSANGLTVNGQAKTGAAAPAAKEGKA 61
           SK ILEER+KGG FKDW DL+ RVKG+ DK++ K S  GLTVNG AK G   P A  GK 
Sbjct: 44  SKAILEERKKGGNFKDWNDLQTRVKGVGDKSSEKFSQAGLTVNGIAKPGVTKPVA--GKT 101

Query: 62  SRAENKGKEGSAKSGKS 78
            +A+    + + +  K+
Sbjct: 102 DKAKKVAGDKAVEPKKT 118