BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4605.p (325 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777068.1| GGDEF family protein [Herbaspirillum seroped... 487 e-135 ref|YP_260413.1| GAF domain/diguanylate cyclase domain-containin... 351 1e-94 ref|YP_347908.1| GAF sensor-containing diguanylate cyclase [Pseu... 345 4e-93 ref|ZP_02886580.1| diguanylate cyclase with GAF sensor [Burkhold... 344 1e-92 ref|YP_001858577.1| GAF sensor-containing diguanylate cyclase [B... 344 1e-92 >ref|YP_003777068.1| GGDEF family protein [Herbaspirillum seropedicae SmR1] gb|ADJ65160.1| GGDEF family protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 250/323 (77%), Positives = 275/323 (85%) Query: 3 MRIAELPANEAARIDALHSLRILDTPREERFDRLTRLARRLFDVPMAVVTMIDVNRQWFK 62 MRIAELPANEAARIDALHSLRILDTPREERFDRLTRLARRLFDVPMAVVTMIDVNRQWFK Sbjct: 1 MRIAELPANEAARIDALHSLRILDTPREERFDRLTRLARRLFDVPMAVVTMIDVNRQWFK 60 Query: 63 SCVGMGDASETSRDISFCAHAILHEGMTIVPDARLDERFAENPQVTGEPFIRFYAGCPIK 122 SCVG+GDA+ETSR++SFCAHAILHE MTIVPDA LD RF+ NPQVTGEPFIRFYAGCPIK Sbjct: 61 SCVGLGDATETSREVSFCAHAILHEEMTIVPDATLDPRFSGNPQVTGEPFIRFYAGCPIK 120 Query: 123 SESGFTLGTLCLVDLKPRAFDADEQALLKDLAAMVEQELAAVKLATIDDLTGVSNRRGFE 182 SESGFTLGTLCLVD PR+FDADE+ALLKDLAAMVEQEL AV++ATID+LTG+SNRRGF+ Sbjct: 121 SESGFTLGTLCLVDTVPRSFDADERALLKDLAAMVEQELTAVRMATIDELTGISNRRGFD 180 Query: 183 ALARHAMATSKRTGRPACMLGFDLNHFKQINDRFGHAAGDLALADFAGLLLTTLRESDVV 242 ALARHA+A S+R PACML FDL+ FKQINDRFGHA GD AL DFA LL ++ RESDV+ Sbjct: 181 ALARHALANSRRMDWPACMLYFDLDQFKQINDRFGHAEGDAALVDFAALLSSSFRESDVI 240 Query: 243 GRLGGDEFAVFLTNTAETDVPVVLSHLQKAVQAFNQNGGREYQLDYCVGVAQYDAASHAD 302 RLGGDEFAVFLTN + VL+H ++V+ FN R Y L Y VGV QYDAA HAD Sbjct: 241 ARLGGDEFAVFLTNADLAESDTVLAHFAQSVREFNVLRPRPYALAYSVGVVQYDAARHAD 300 Query: 303 LSDLMGSADHAMYQRKKARSAPA 325 L+ L SAD MY+RKK R A A Sbjct: 301 LAALQHSADALMYERKKTRRAQA 323 >ref|YP_260413.1| GAF domain/diguanylate cyclase domain-containing protein [Pseudomonas fluorescens Pf-5] gb|AAY92577.1| GAF domain/diguanylate cyclase domain protein [Pseudomonas fluorescens Pf-5] Length = 322 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 178/312 (57%), Positives = 224/312 (71%), Gaps = 1/312 (0%) Query: 9 PANEAARIDALHSLRILDTPREERFDRLTRLARRLFDVPMAVVTMIDVNRQWFKSCVGMG 68 P NEA RI L L +LDT EERFDRLTRLA+RLF+VP+A+V+++D +RQWFKSCVG+ Sbjct: 7 PNNEALRIQTLRELNVLDTSPEERFDRLTRLAKRLFNVPIALVSLVDADRQWFKSCVGL- 65 Query: 69 DASETSRDISFCAHAILHEGMTIVPDARLDERFAENPQVTGEPFIRFYAGCPIKSESGFT 128 D SETSRDISFC HAIL + + VPDA LDERF +NP V G P IRFYAGCP+ +G Sbjct: 66 DVSETSRDISFCGHAILGDQILTVPDAGLDERFHDNPLVVGAPGIRFYAGCPLTVTNGSK 125 Query: 129 LGTLCLVDLKPRAFDADEQALLKDLAAMVEQELAAVKLATIDDLTGVSNRRGFEALARHA 188 LGTLCL+D+KPR D +++ALL+DLA M EQELAAV++A++D+LT +SNRRGFEALARHA Sbjct: 126 LGTLCLIDIKPRDLDDEDRALLRDLARMAEQELAAVQMASMDELTLLSNRRGFEALARHA 185 Query: 189 MATSKRTGRPACMLGFDLNHFKQINDRFGHAAGDLALADFAGLLLTTLRESDVVGRLGGD 248 + KR +PA +L FDLN FKQIND +GHA GD AL FA +L RESDV+GRLGGD Sbjct: 186 LGVCKRLEKPATLLFFDLNDFKQINDTYGHAEGDGALKTFADVLRIAFRESDVIGRLGGD 245 Query: 249 EFAVFLTNTAETDVPVVLSHLQKAVQAFNQNGGREYQLDYCVGVAQYDAASHADLSDLMG 308 EF LT + +++ L++ + N R Y + + VG +YDA H D+ L+ Sbjct: 246 EFVALLTAADHVETSAIMARLREILDERNATLKRGYDIRFSVGQIEYDAERHPDIEALLA 305 Query: 309 SADHAMYQRKKA 320 AD AMY K+A Sbjct: 306 DADKAMYLHKQA 317 >ref|YP_347908.1| GAF sensor-containing diguanylate cyclase [Pseudomonas fluorescens Pf0-1] gb|ABA73919.1| putative GGDEF/GAF domain sensory box protein [Pseudomonas fluorescens Pf0-1] Length = 321 Score = 345 bits (886), Expect = 4e-93, Method: Composition-based stats. Identities = 174/318 (54%), Positives = 227/318 (71%), Gaps = 1/318 (0%) Query: 3 MRIAELPANEAARIDALHSLRILDTPREERFDRLTRLARRLFDVPMAVVTMIDVNRQWFK 62 M + PANEA RI AL L++LDT EERFDRLTRLA+RLF+VP+A+VT++D RQWFK Sbjct: 1 MLVPGKPANEAVRIQALQDLKLLDTAPEERFDRLTRLAKRLFNVPIALVTLVDKERQWFK 60 Query: 63 SCVGMGDASETSRDISFCAHAILHEGMTIVPDARLDERFAENPQVTGEPFIRFYAGCPIK 122 SCVG+ D +ET R +SFCAHAIL + + +VPDAR DERF +NP VTGEP IRFYAG P+ Sbjct: 61 SCVGL-DTTETPRSVSFCAHAILRDELMLVPDAREDERFHDNPLVTGEPNIRFYAGYPLT 119 Query: 123 SESGFTLGTLCLVDLKPRAFDADEQALLKDLAAMVEQELAAVKLATIDDLTGVSNRRGFE 182 SG +GTLCL+D KPR D +E+ALL+DLA M EQEL AV++A++D+LT +SNRRGF+ Sbjct: 120 VPSGNKMGTLCLIDTKPRDLDEEERALLRDLAGMAEQELMAVQMASMDELTLLSNRRGFK 179 Query: 183 ALARHAMATSKRTGRPACMLGFDLNHFKQINDRFGHAAGDLALADFAGLLLTTLRESDVV 242 LA+HA+ R +PA +L FDLN FKQIND +GHA GD AL FA +L RESDVV Sbjct: 180 MLAQHALDACARLEKPATLLFFDLNDFKQINDLYGHAEGDSALKTFADVLRIAFRESDVV 239 Query: 243 GRLGGDEFAVFLTNTAETDVPVVLSHLQKAVQAFNQNGGREYQLDYCVGVAQYDAASHAD 302 GRLGGDEF LT ++ + +++ L++ ++ N R Y + + VG +Y+ H Sbjct: 240 GRLGGDEFVALLTGSSHVETTAIMARLKEILEERNATLHRGYAIRFSVGQIEYNPQRHES 299 Query: 303 LSDLMGSADHAMYQRKKA 320 + L+ AD AMY+ K+A Sbjct: 300 VDKLLADADAAMYEHKQA 317 >ref|ZP_02886580.1| diguanylate cyclase with GAF sensor [Burkholderia graminis C4D1M] gb|EDT07809.1| diguanylate cyclase with GAF sensor [Burkholderia graminis C4D1M] Length = 326 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 188/323 (58%), Positives = 232/323 (71%), Gaps = 1/323 (0%) Query: 3 MRIAELPANEAARIDALHSLRILDTPREERFDRLTRLARRLFDVPMAVVTMIDVNRQWFK 62 M +P+NE+ R+D L +L ILDTP EERFDRLTRLA+RLF VP+A+V+++D NRQWFK Sbjct: 1 MHTPPIPSNESTRLDTLRALHILDTPPEERFDRLTRLAKRLFGVPIALVSLVDANRQWFK 60 Query: 63 SCVGMGDASETSRDISFCAHAILHEGMTIVPDARLDERFAENPQVTGEPFIRFYAGCPIK 122 SCVG+ ASETSRD+SFCAHAIL + + VPD DERF +NP VT P IRFYAGCP+ Sbjct: 61 SCVGL-TASETSRDVSFCAHAILDDDILAVPDTLADERFHDNPLVTEAPNIRFYAGCPLT 119 Query: 123 SESGFTLGTLCLVDLKPRAFDADEQALLKDLAAMVEQELAAVKLATIDDLTGVSNRRGFE 182 +G LGTLCL+D+KPR D +E+ LL+DLA M EQELAAV+LAT+DDLT +SNRRGF Sbjct: 120 VPNGSRLGTLCLIDVKPRELDDEERELLRDLARMAEQELAAVQLATLDDLTLLSNRRGFS 179 Query: 183 ALARHAMATSKRTGRPACMLGFDLNHFKQINDRFGHAAGDLALADFAGLLLTTLRESDVV 242 ALA+HA+ KR RPA +L FDLN FKQIND FGHA GD AL FA +L TLRESDV+ Sbjct: 180 ALAQHALNVCKRLDRPASLLFFDLNDFKQINDTFGHAEGDHALKTFADVLRGTLRESDVI 239 Query: 243 GRLGGDEFAVFLTNTAETDVPVVLSHLQKAVQAFNQNGGREYQLDYCVGVAQYDAASHAD 302 GRLGGDEF V L++T V L ++ N R Y + + VG +YDAA H Sbjct: 240 GRLGGDEFVVLLSDTDAAATQEVTERLTHSLDERNAQAQRGYSIRFSVGQIEYDAARHGS 299 Query: 303 LSDLMGSADHAMYQRKKARSAPA 325 +++L+ +AD AMY K+A A A Sbjct: 300 IAELLSAADAAMYSHKQASKARA 322 >ref|YP_001858577.1| GAF sensor-containing diguanylate cyclase [Burkholderia phymatum STM815] gb|ACC71531.1| diguanylate cyclase with GAF sensor [Burkholderia phymatum STM815] Length = 319 Score = 344 bits (882), Expect = 1e-92, Method: Composition-based stats. Identities = 181/314 (57%), Positives = 226/314 (71%), Gaps = 1/314 (0%) Query: 8 LPANEAARIDALHSLRILDTPREERFDRLTRLARRLFDVPMAVVTMIDVNRQWFKSCVGM 67 +P NE+ R++ L SL ILDTP EERFDRLTRLARRLF VP+A VT++D +RQWFKS G+ Sbjct: 6 IPDNESERVETLRSLHILDTPPEERFDRLTRLARRLFGVPIAAVTLVDSHRQWFKSHPGL 65 Query: 68 GDASETSRDISFCAHAILHEGMTIVPDARLDERFAENPQVTGEPFIRFYAGCPIKSESGF 127 +ASET RD+SFC HAI + + +V DA LD RFA+NP VTG+P IRFYAG P+ +G Sbjct: 66 -EASETPRDVSFCGHAIADDDLFLVNDASLDVRFADNPLVTGDPNIRFYAGYPLTVSNGS 124 Query: 128 TLGTLCLVDLKPRAFDADEQALLKDLAAMVEQELAAVKLATIDDLTGVSNRRGFEALARH 187 LGTLCL+D+KPRA D +E+ LL+DLA M EQE+AAV+LAT D+LTG+SNRRGFEALA+H Sbjct: 125 RLGTLCLIDVKPRALDDEERVLLRDLARMAEQEIAAVQLATTDELTGLSNRRGFEALAQH 184 Query: 188 AMATSKRTGRPACMLGFDLNHFKQINDRFGHAAGDLALADFAGLLLTTLRESDVVGRLGG 247 A+ KR +PA +L FDLN FKQIND FGHA GD AL FA +L T LR+SDV+GRLGG Sbjct: 185 AIKHCKRAQKPASLLFFDLNGFKQINDVFGHAEGDRALIAFAAVLRTALRDSDVIGRLGG 244 Query: 248 DEFAVFLTNTAETDVPVVLSHLQKAVQAFNQNGGREYQLDYCVGVAQYDAASHADLSDLM 307 DEF V LT++ + + L+ + NQ+ YQL VG A Y S + DL+ Sbjct: 245 DEFVVLLTDSDQQGTLQTIERLRHQLDLQNQSAQAPYQLHCSVGTATYTPDSPRSIDDLL 304 Query: 308 GSADHAMYQRKKAR 321 AD AMY K+A+ Sbjct: 305 AQADVAMYANKRAQ 318