BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4602.p         (110 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004028998.1| transcription regulator [Burkholderia rhizox...   166   7e-40
ref|YP_001354019.1| hypothetical protein mma_2329 [Janthinobacte...   164   6e-39
ref|YP_558662.1| hypothetical protein Bxe_A2360 [Burkholderia xe...   160   7e-38
ref|ZP_03270728.1| conserved hypothetical protein [Burkholderia ...   160   8e-38
ref|YP_004228301.1| hypothetical protein BC1001_1808 [Burkholder...   159   9e-38

>ref|YP_004028998.1| transcription regulator [Burkholderia rhizoxinica HKI 454]
 emb|CBW74854.1| Hypothetical transcriptional regulatory protein [Burkholderia
           rhizoxinica HKI 454]
          Length = 133

 Score =  166 bits (421), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 95/108 (87%), Positives = 104/108 (96%)

Query: 3   MMKGQLAGLMKQAQAMQDNMKKAQEQLASIEVEGQSGAGLVKVVMTCKNDVKRVSIDPSL 62
           MMKGQLAGLMKQAQ MQ+NMKK QEQLA IE+EGQSGAGLVKV MTCKN+V+RV+IDPSL
Sbjct: 26  MMKGQLAGLMKQAQQMQENMKKMQEQLAQIEIEGQSGAGLVKVTMTCKNEVRRVTIDPSL 85

Query: 63  LADDKDMLEDLVAAAFNDAVRKAEATAQEKMSGVTAGMPLPPGFKMPF 110
           LADDKDMLEDLVAAAFNDAVRKAEATAQE+MSG+TAG+PLPPGFK+PF
Sbjct: 86  LADDKDMLEDLVAAAFNDAVRKAEATAQERMSGMTAGLPLPPGFKLPF 133


>ref|YP_001354019.1| hypothetical protein mma_2329 [Janthinobacterium sp. Marseille]
 sp|A6T0H2|Y2329_JANMA RecName: Full=UPF0133 protein mma_2329
 gb|ABR89321.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 108

 Score =  164 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 103/108 (95%), Positives = 106/108 (98%)

Query: 3   MMKGQLAGLMKQAQAMQDNMKKAQEQLASIEVEGQSGAGLVKVVMTCKNDVKRVSIDPSL 62
           MMK QLAGLMKQAQAMQDNMKK Q+QLASIEVEGQSGAGLVKVVM+CKNDVKRVSIDPSL
Sbjct: 1   MMKNQLAGLMKQAQAMQDNMKKMQDQLASIEVEGQSGAGLVKVVMSCKNDVKRVSIDPSL 60

Query: 63  LADDKDMLEDLVAAAFNDAVRKAEATAQEKMSGVTAGMPLPPGFKMPF 110
           LADDKDMLEDLVAAAFNDAVRKAEAT+QEKMSGVTAGMPLPPGFKMPF
Sbjct: 61  LADDKDMLEDLVAAAFNDAVRKAEATSQEKMSGVTAGMPLPPGFKMPF 108


>ref|YP_558662.1| hypothetical protein Bxe_A2360 [Burkholderia xenovorans LB400]
 ref|YP_001895459.1| hypothetical protein Bphyt_1827 [Burkholderia phytofirmans PsJN]
 ref|ZP_06840600.1| conserved hypothetical protein [Burkholderia sp. Ch1-1]
 sp|Q13Z79|Y2072_BURXL RecName: Full=UPF0133 protein Bxeno_A2072
 sp|B2T3S4|Y1827_BURPP RecName: Full=UPF0133 protein Bphyt_1827
 gb|ABE30610.1| Conserved hypothetical protein 103 [Burkholderia xenovorans LB400]
 gb|ACD16235.1| conserved hypothetical protein [Burkholderia phytofirmans PsJN]
 gb|EFG71796.1| conserved hypothetical protein [Burkholderia sp. Ch1-1]
          Length = 108

 Score =  160 bits (404), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 97/108 (89%), Positives = 103/108 (95%)

Query: 3   MMKGQLAGLMKQAQAMQDNMKKAQEQLASIEVEGQSGAGLVKVVMTCKNDVKRVSIDPSL 62
           MMKGQLAGLMKQAQ MQ+NMKK QEQLA IEVEGQSGAGLVKV MTCKNDV+RVSIDPSL
Sbjct: 1   MMKGQLAGLMKQAQQMQENMKKMQEQLALIEVEGQSGAGLVKVTMTCKNDVRRVSIDPSL 60

Query: 63  LADDKDMLEDLVAAAFNDAVRKAEATAQEKMSGVTAGMPLPPGFKMPF 110
           LADDKDMLEDLVAAAFNDAVRKAEATAQEKM G+T+G+PLPPGFK+PF
Sbjct: 61  LADDKDMLEDLVAAAFNDAVRKAEATAQEKMGGMTSGLPLPPGFKLPF 108


>ref|ZP_03270728.1| conserved hypothetical protein [Burkholderia sp. H160]
 ref|YP_003604983.1| hypothetical protein BC1002_1396 [Burkholderia sp. CCGE1002]
 gb|EDZ97686.1| conserved hypothetical protein [Burkholderia sp. H160]
 gb|ADG15472.1| conserved hypothetical protein [Burkholderia sp. CCGE1002]
          Length = 108

 Score =  160 bits (404), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 98/108 (90%), Positives = 103/108 (95%)

Query: 3   MMKGQLAGLMKQAQAMQDNMKKAQEQLASIEVEGQSGAGLVKVVMTCKNDVKRVSIDPSL 62
           MMKGQLAGLMKQAQ MQ+NMKK QEQLA IEVEGQSGAGLVKV MTCKNDV+RVSIDPSL
Sbjct: 1   MMKGQLAGLMKQAQQMQENMKKMQEQLAQIEVEGQSGAGLVKVTMTCKNDVRRVSIDPSL 60

Query: 63  LADDKDMLEDLVAAAFNDAVRKAEATAQEKMSGVTAGMPLPPGFKMPF 110
           LADDKDMLEDLVAAAFNDAVRKAEATAQEKM G+TAG+PLPPGFK+PF
Sbjct: 61  LADDKDMLEDLVAAAFNDAVRKAEATAQEKMGGMTAGLPLPPGFKLPF 108


>ref|YP_004228301.1| hypothetical protein BC1001_1808 [Burkholderia sp. CCGE1001]
 gb|ADX55241.1| Uncharacterized protein family UPF0133 [Burkholderia sp. CCGE1001]
          Length = 108

 Score =  159 bits (403), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 96/108 (88%), Positives = 103/108 (95%)

Query: 3   MMKGQLAGLMKQAQAMQDNMKKAQEQLASIEVEGQSGAGLVKVVMTCKNDVKRVSIDPSL 62
           MMKGQLAGLMKQAQ MQ+NMKK QEQLA IEVEGQSGAGLVK+ MTCKNDV+RVSIDPSL
Sbjct: 1   MMKGQLAGLMKQAQQMQENMKKMQEQLAQIEVEGQSGAGLVKITMTCKNDVRRVSIDPSL 60

Query: 63  LADDKDMLEDLVAAAFNDAVRKAEATAQEKMSGVTAGMPLPPGFKMPF 110
           LADDKDMLEDLVAAAFNDAVRKAEATAQEKM G+T+G+PLPPGFK+PF
Sbjct: 61  LADDKDMLEDLVAAAFNDAVRKAEATAQEKMGGMTSGLPLPPGFKLPF 108