BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4601.p         (100 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777065.1| hypothetical protein Hsero_3679 [Herbaspiril...   188   2e-46
ref|ZP_08111979.1| YCII-related protein [Desulfovibrio sp. ND132...   109   2e-22
ref|NP_903820.1| hypothetical protein CV_4150 [Chromobacterium v...   108   2e-22
ref|YP_004158226.1| ycii-like protein [Variovorax paradoxus EPS]...   108   4e-22
ref|YP_001554879.1| YCII-like protein [Shewanella baltica OS195]...   105   2e-21

>ref|YP_003777065.1| hypothetical protein Hsero_3679 [Herbaspirillum seropedicae SmR1]
 gb|ADJ65157.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 100

 Score =  188 bits (478), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 97/100 (97%), Positives = 99/100 (99%)

Query: 1   MFIVSITYTKPASEIDSLLTAHKKFLNQQYAEGVFLMSGRKVPRTGGIIIADCADRAEIE 60
           MFIVSITYTKPA +ID+LLTAHKKFLNQQYAEGVFLMSGRKVPRTGGIIIADCADRAEIE
Sbjct: 1   MFIVSITYTKPAGDIDALLTAHKKFLNQQYAEGVFLMSGRKVPRTGGIIIADCADRAEIE 60

Query: 61  AIMESDPFFIGGVAEYEIIEFVPSMTAEALEAFRYSVDRN 100
           AIMESDPFFIGGVAEYEIIEFVPSMTAEALEAFRYSVDRN
Sbjct: 61  AIMESDPFFIGGVAEYEIIEFVPSMTAEALEAFRYSVDRN 100


>ref|ZP_08111979.1| YCII-related protein [Desulfovibrio sp. ND132]
 gb|EGB15864.1| YCII-related protein [Desulfovibrio desulfuricans ND132]
          Length = 96

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/94 (57%), Positives = 68/94 (72%)

Query: 1  MFIVSITYTKPASEIDSLLTAHKKFLNQQYAEGVFLMSGRKVPRTGGIIIADCADRAEIE 60
          MFI+ +TY KP SEID L+  H ++L + YA G FL SGR+ PRTGG+IIA    RAE++
Sbjct: 1  MFILLLTYVKPLSEIDRLIPPHVEYLEKNYAAGTFLFSGRREPRTGGVIIARAGSRAEVK 60

Query: 61 AIMESDPFFIGGVAEYEIIEFVPSMTAEALEAFR 94
          AI+  DPF I G AEYEI+EF PS TA  L+A+R
Sbjct: 61 AIIAEDPFLIEGAAEYEIVEFHPSKTAPDLDAYR 94


>ref|NP_903820.1| hypothetical protein CV_4150 [Chromobacterium violaceum ATCC
          12472]
 gb|AAQ61811.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
          12472]
          Length = 95

 Score =  108 bits (270), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 55/94 (58%), Positives = 69/94 (73%), Gaps = 1/94 (1%)

Query: 1  MFIVSITYTKPASEIDSLLTAHKKFLNQQYAEGVFLMSGRKVPRTGGIIIADCADRAEIE 60
          MFIVS+TYT P S++D+LL AH  +L Q YA+G FL SGRKVPR GG+I+A   +RA +E
Sbjct: 1  MFIVSLTYTAPLSDVDALLDAHVAWLKQAYADGAFLASGRKVPREGGVILAR-GERAALE 59

Query: 61 AIMESDPFFIGGVAEYEIIEFVPSMTAEALEAFR 94
          A +  DPF  GGVA Y+IIEF PSM A  LE+ +
Sbjct: 60 ARLAEDPFAKGGVARYDIIEFAPSMAAAGLESLK 93


>ref|YP_004158226.1| ycii-like protein [Variovorax paradoxus EPS]
 gb|ADU40115.1| YCII-related protein [Variovorax paradoxus EPS]
          Length = 96

 Score =  108 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 47/94 (50%), Positives = 69/94 (73%)

Query: 1  MFIVSITYTKPASEIDSLLTAHKKFLNQQYAEGVFLMSGRKVPRTGGIIIADCADRAEIE 60
          MFIV++TYT+P +E+D+L+  H  +L + Y  G+F+ SGR+VPRTGG+I A   DR  ++
Sbjct: 1  MFIVTLTYTRPLAEVDALMDPHMVWLKKHYESGLFVASGRQVPRTGGVIFARSGDREALQ 60

Query: 61 AIMESDPFFIGGVAEYEIIEFVPSMTAEALEAFR 94
          A++  DPF  GGVA  ++ EFVPSMTA ++EA +
Sbjct: 61 AVLARDPFVQGGVAHVDVTEFVPSMTAPSIEALK 94


>ref|YP_001554879.1| YCII-like protein [Shewanella baltica OS195]
 gb|ABX49619.1| YCII-related [Shewanella baltica OS195]
 gb|ADT94603.1| YCII-related protein [Shewanella baltica OS678]
          Length = 97

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/93 (55%), Positives = 68/93 (73%)

Query: 1  MFIVSITYTKPASEIDSLLTAHKKFLNQQYAEGVFLMSGRKVPRTGGIIIADCADRAEIE 60
          MF+VS+TY KP +E++  L AH  +L Q YA G F+ SGRKVPRTGG+I+A    RA +E
Sbjct: 1  MFVVSLTYKKPIAEVELHLAAHIAYLEQYYAAGTFIASGRKVPRTGGVILAKAESRAALE 60

Query: 61 AIMESDPFFIGGVAEYEIIEFVPSMTAEALEAF 93
          AI++ DPF I  VAE+E+IEFVP+ TA  LE+ 
Sbjct: 61 AILQQDPFCIADVAEFEVIEFVPTKTAPGLESL 93