BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4600.p         (171 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777064.1| recombinational DNA repair protein [Herbaspi...   324   3e-87
ref|YP_001354018.1| recombination protein RecR [Janthinobacteriu...   288   2e-76
sp|A4G3Z0|RECR_HERAR RecName: Full=Recombination protein recR >g...   288   2e-76
ref|YP_001099354.1| recombination protein RecR [Herminiimonas ar...   288   3e-76
ref|YP_004753460.1| recombination protein [Collimonas fungivoran...   286   6e-76

>ref|YP_003777064.1| recombinational DNA repair protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ65156.1| rocombinational DNA repair protein [Herbaspirillum seropedicae
           SmR1]
          Length = 198

 Score =  324 bits (830), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 166/171 (97%), Positives = 169/171 (98%)

Query: 1   MAFHLLQHDRDAAAGLSQSLTKALETIRHCALCNTFTEQVVCETCQDSQRDHTQLCVVES 60
           MA+HLLQHDRDAAA LSQSL KAL+TIRHCALCNTFTEQVVCETCQDSQRDHTQLCVVES
Sbjct: 28  MAYHLLQHDRDAAADLSQSLAKALDTIRHCALCNTFTEQVVCETCQDSQRDHTQLCVVES 87

Query: 61  PSDQVMIEQTLTFKGLYFVLMGRLSPLDGIGPRDIHLEKLITRATDGVVSEVVLATNFTN 120
           PSDQVMIEQTLTFKGLYFVLMGRLSPLDGIGPRDIHLEKLITRATDGVVSEVVLATNFTN
Sbjct: 88  PSDQVMIEQTLTFKGLYFVLMGRLSPLDGIGPRDIHLEKLITRATDGVVSEVVLATNFTN 147

Query: 121 EGEATAHYISETLKARGLKVSRLARGVPVGGELEYVDAGTIARAMLDRRST 171
           EGEATAHYISETLKARGLKVSRLARGVPVGGELEYVDAGTIARAMLDRR+T
Sbjct: 148 EGEATAHYISETLKARGLKVSRLARGVPVGGELEYVDAGTIARAMLDRRTT 198


>ref|YP_001354018.1| recombination protein RecR [Janthinobacterium sp. Marseille]
 sp|A6T0H1|RECR_JANMA RecName: Full=Recombination protein recR
 gb|ABR89322.1| Recombinational DNA repair protein (RecF pathway)
           [Janthinobacterium sp. Marseille]
          Length = 198

 Score =  288 bits (737), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 140/171 (81%), Positives = 159/171 (92%)

Query: 1   MAFHLLQHDRDAAAGLSQSLTKALETIRHCALCNTFTEQVVCETCQDSQRDHTQLCVVES 60
           MA+HL+QHDRD AA L ++L++A+E ++HCA+CNTFTE  VCETC D++R+   LCVVE+
Sbjct: 28  MAYHLMQHDRDGAAMLGRALSQAVEKVQHCAMCNTFTEHEVCETCLDAERNPALLCVVET 87

Query: 61  PSDQVMIEQTLTFKGLYFVLMGRLSPLDGIGPRDIHLEKLITRATDGVVSEVVLATNFTN 120
           P DQ+MIEQTLTFKGLYFVLMGRLSPLDGIGP+DIHLEKLI+RATDG+V EVVLATNFTN
Sbjct: 88  PGDQLMIEQTLTFKGLYFVLMGRLSPLDGIGPKDIHLEKLISRATDGIVQEVVLATNFTN 147

Query: 121 EGEATAHYISETLKARGLKVSRLARGVPVGGELEYVDAGTIARAMLDRRST 171
           EGEATAHYISETLKARGLKVSRLARGVPVGGELEYVDAGTIARAMLDRR+T
Sbjct: 148 EGEATAHYISETLKARGLKVSRLARGVPVGGELEYVDAGTIARAMLDRRTT 198


>sp|A4G3Z0|RECR_HERAR RecName: Full=Recombination protein recR
 emb|CAL61227.2| Recombination protein RecR [Herminiimonas arsenicoxydans]
          Length = 198

 Score =  288 bits (736), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 140/171 (81%), Positives = 159/171 (92%)

Query: 1   MAFHLLQHDRDAAAGLSQSLTKALETIRHCALCNTFTEQVVCETCQDSQRDHTQLCVVES 60
           MA+HL+QHDRD AA L ++L++A+E ++HCA+CNTFTE  VCETC D++R+   LCVVE+
Sbjct: 28  MAYHLMQHDRDGAAMLGRALSQAVERVQHCAMCNTFTESAVCETCLDAERNAALLCVVET 87

Query: 61  PSDQVMIEQTLTFKGLYFVLMGRLSPLDGIGPRDIHLEKLITRATDGVVSEVVLATNFTN 120
           P DQ+MIEQTLTFKGLYFVLMGRLSPLDGIGP+DIHLEKLI+RATDG+V EVVLATNFTN
Sbjct: 88  PGDQLMIEQTLTFKGLYFVLMGRLSPLDGIGPKDIHLEKLISRATDGIVQEVVLATNFTN 147

Query: 121 EGEATAHYISETLKARGLKVSRLARGVPVGGELEYVDAGTIARAMLDRRST 171
           EGEATAHYISETLKARGLKVSRLARGVPVGGELEYVDAGTIARAMLDRR+T
Sbjct: 148 EGEATAHYISETLKARGLKVSRLARGVPVGGELEYVDAGTIARAMLDRRTT 198


>ref|YP_001099354.1| recombination protein RecR [Herminiimonas arsenicoxydans]
          Length = 185

 Score =  288 bits (736), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 140/171 (81%), Positives = 159/171 (92%)

Query: 1   MAFHLLQHDRDAAAGLSQSLTKALETIRHCALCNTFTEQVVCETCQDSQRDHTQLCVVES 60
           MA+HL+QHDRD AA L ++L++A+E ++HCA+CNTFTE  VCETC D++R+   LCVVE+
Sbjct: 15  MAYHLMQHDRDGAAMLGRALSQAVERVQHCAMCNTFTESAVCETCLDAERNAALLCVVET 74

Query: 61  PSDQVMIEQTLTFKGLYFVLMGRLSPLDGIGPRDIHLEKLITRATDGVVSEVVLATNFTN 120
           P DQ+MIEQTLTFKGLYFVLMGRLSPLDGIGP+DIHLEKLI+RATDG+V EVVLATNFTN
Sbjct: 75  PGDQLMIEQTLTFKGLYFVLMGRLSPLDGIGPKDIHLEKLISRATDGIVQEVVLATNFTN 134

Query: 121 EGEATAHYISETLKARGLKVSRLARGVPVGGELEYVDAGTIARAMLDRRST 171
           EGEATAHYISETLKARGLKVSRLARGVPVGGELEYVDAGTIARAMLDRR+T
Sbjct: 135 EGEATAHYISETLKARGLKVSRLARGVPVGGELEYVDAGTIARAMLDRRTT 185


>ref|YP_004753460.1| recombination protein [Collimonas fungivorans Ter331]
 gb|AEK62637.1| Recombination protein [Collimonas fungivorans Ter331]
          Length = 190

 Score =  286 bits (733), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 142/171 (83%), Positives = 158/171 (92%)

Query: 1   MAFHLLQHDRDAAAGLSQSLTKALETIRHCALCNTFTEQVVCETCQDSQRDHTQLCVVES 60
           MA+HLLQHDRD AA L ++LT+A++ IRHCA+CNTFTE  VCETC D +RD + LCVVE+
Sbjct: 20  MAYHLLQHDRDGAALLGRALTQAVDQIRHCAMCNTFTENEVCETCLDPERDPSLLCVVET 79

Query: 61  PSDQVMIEQTLTFKGLYFVLMGRLSPLDGIGPRDIHLEKLITRATDGVVSEVVLATNFTN 120
           P+DQ+MIEQTLTFKGLYFVLMGRLSPLDGIGP+DI LEKLI RATDGVV EVVLATNFTN
Sbjct: 80  PTDQLMIEQTLTFKGLYFVLMGRLSPLDGIGPKDIQLEKLIGRATDGVVKEVVLATNFTN 139

Query: 121 EGEATAHYISETLKARGLKVSRLARGVPVGGELEYVDAGTIARAMLDRRST 171
           EGEATAHYISET+KARGL+VSRLARGVPVGGELEYVDAGTIARAMLDRR+T
Sbjct: 140 EGEATAHYISETMKARGLQVSRLARGVPVGGELEYVDAGTIARAMLDRRAT 190