BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4597.p (335 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777062.1| nitrate/sulfonate/bicarbonate ABC transporte... 574 e-162 ref|YP_004753459.1| family 3 extracellular solute-binding protei... 530 e-148 ref|YP_523992.1| extracellular solute-binding protein [Rhodofera... 491 e-137 ref|YP_002005932.1| ABC transporter substrate-binding protein [C... 445 e-123 ref|YP_584270.1| ABC transporter periplasmic protein [Cupriavidu... 444 e-122 >ref|YP_003777062.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ65154.1| ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 345 Score = 574 bits (1480), Expect = e-162, Method: Composition-based stats. Identities = 307/334 (91%), Positives = 320/334 (95%) Query: 1 MKFNLKQFAIALALFLAGYLTFNTNLFAQALEKPKVSIAVGGKNLFYYLPLTIAEQLGYF 60 MK + KQ IA LFLAGY +FN + AQALEKPKVSIAVGGKNLFYYLPLTIAEQLGYF Sbjct: 1 MKLSWKQLLIAAGLFLAGYFSFNGSAGAQALEKPKVSIAVGGKNLFYYLPLTIAEQLGYF 60 Query: 61 KDEGLQVEISDFAGGAKALQAMVGGSADVVSGAFEHTINMQAKNQPIVAFVLQGRAPQIV 120 KDEGLQVEISDFAGGAKALQAMVGGSADVVSGA+EHTINMQAKNQPIVAFVLQGRAPQIV Sbjct: 61 KDEGLQVEISDFAGGAKALQAMVGGSADVVSGAYEHTINMQAKNQPIVAFVLQGRAPQIV 120 Query: 121 LAVNNKTMPNYKTVADLKGKKIGVTAPGSSTSIMASYVLAKAGLKPTDVSFIGVGAAAGA 180 LAVNNKTMPNYKTVADLKGKKIGVTAPGSSTS+MASYVLAKAGLKP+DVSFIGVGAAAGA Sbjct: 121 LAVNNKTMPNYKTVADLKGKKIGVTAPGSSTSVMASYVLAKAGLKPSDVSFIGVGAAAGA 180 Query: 181 ISAIRSGQIDAIANLDPVISMLEQNNEIKVVADTRTLKDTNDVFGGPMPAATLYAPAAFV 240 ISA+RSGQIDAIANLDPVISMLEQ+ EIK +ADTRTLKDTNDVFGGPMPAATLYAPAAF+ Sbjct: 181 ISAVRSGQIDAIANLDPVISMLEQSKEIKTIADTRTLKDTNDVFGGPMPAATLYAPAAFI 240 Query: 241 QKYPNTTQALTNAMVRALKWIQKAGPSDIIKAVPESYLLGDRSLYIDAFMKVRQAISPDG 300 QKYPNTTQALTNAMVRALKWIQKAGPSDIIKAVPESYLLGDRSLYIDAFMKVRQAISPDG Sbjct: 241 QKYPNTTQALTNAMVRALKWIQKAGPSDIIKAVPESYLLGDRSLYIDAFMKVRQAISPDG 300 Query: 301 YFPPGGPDTALRTLKAFEPDLASKKIDLSRTYTN 334 YFPPGGPDTALRTLKAFEP LA K+IDLS+T+TN Sbjct: 301 YFPPGGPDTALRTLKAFEPSLADKQIDLSKTFTN 334 >ref|YP_004753459.1| family 3 extracellular solute-binding protein [Collimonas fungivorans Ter331] gb|AEK62636.1| extracellular solute-binding protein, family 3 [Collimonas fungivorans Ter331] Length = 345 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 273/335 (81%), Positives = 306/335 (91%) Query: 1 MKFNLKQFAIALALFLAGYLTFNTNLFAQALEKPKVSIAVGGKNLFYYLPLTIAEQLGYF 60 MKF+ KQF IAL LFLAGY TFN LFAQ EK KV+IAVGGKNLFYYLPLTIAEQLGYF Sbjct: 1 MKFSWKQFGIALCLFLAGYFTFNGKLFAQTPEKTKVAIAVGGKNLFYYLPLTIAEQLGYF 60 Query: 61 KDEGLQVEISDFAGGAKALQAMVGGSADVVSGAFEHTINMQAKNQPIVAFVLQGRAPQIV 120 KDEGL V ISDFAGGAKALQA+VGGSADVVSGAFEHTI+MQAKNQ IVAFVLQGRAPQIV Sbjct: 61 KDEGLDVTISDFAGGAKALQALVGGSADVVSGAFEHTISMQAKNQHIVAFVLQGRAPQIV 120 Query: 121 LAVNNKTMPNYKTVADLKGKKIGVTAPGSSTSIMASYVLAKAGLKPTDVSFIGVGAAAGA 180 + V+NKTMPNYK++ADLKGKKIGVTAPGSSTS+M+++VLAK GLKPTDVS+IGVGA+AGA Sbjct: 121 MGVSNKTMPNYKSIADLKGKKIGVTAPGSSTSMMSNFVLAKGGLKPTDVSYIGVGASAGA 180 Query: 181 ISAIRSGQIDAIANLDPVISMLEQNNEIKVVADTRTLKDTNDVFGGPMPAATLYAPAAFV 240 +SA+RSG ID IANLDP+I+M++QNNEI+++ADTRTLKDTN VFGGPMPAATLYA A F+ Sbjct: 181 LSALRSGSIDVIANLDPLITMMQQNNEIRIIADTRTLKDTNAVFGGPMPAATLYASADFI 240 Query: 241 QKYPNTTQALTNAMVRALKWIQKAGPSDIIKAVPESYLLGDRSLYIDAFMKVRQAISPDG 300 +KYPNTTQALTNAMVRALKW+QKAGPSDI+K VPESY LGDR+LYI+AFMKVR+AISPDG Sbjct: 241 KKYPNTTQALTNAMVRALKWLQKAGPSDIVKTVPESYQLGDRALYIEAFMKVREAISPDG 300 Query: 301 YFPPGGPDTALRTLKAFEPDLASKKIDLSRTYTNE 335 P GP ALRTL+AF+PDLA K IDLS+TYTNE Sbjct: 301 TIPDAGPQVALRTLQAFDPDLAGKNIDLSQTYTNE 335 >ref|YP_523992.1| extracellular solute-binding protein [Rhodoferax ferrireducens T118] gb|ABD70461.1| extracellular solute-binding protein, family 3 [Rhodoferax ferrireducens T118] Length = 340 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 257/332 (77%), Positives = 296/332 (89%), Gaps = 3/332 (0%) Query: 4 NLKQFAIALALFLAGYLTFNTNLFAQALEKPKVSIAVGGKNLFYYLPLTIAEQLGYFKDE 63 N K+ AI + + LA LT T+ FAQ++EK KVSIAVGGKNLFYYLPLTIAEQLGYFKDE Sbjct: 2 NFKKIAIGMVM-LAACLT--TSAFAQSIEKSKVSIAVGGKNLFYYLPLTIAEQLGYFKDE 58 Query: 64 GLQVEISDFAGGAKALQAMVGGSADVVSGAFEHTINMQAKNQPIVAFVLQGRAPQIVLAV 123 GL+VEISDFAGG+KALQA++GGSADVVSGAFEHTINMQAK Q I AFVLQGRAPQIV V Sbjct: 59 GLEVEISDFAGGSKALQALIGGSADVVSGAFEHTINMQAKGQMITAFVLQGRAPQIVFGV 118 Query: 124 NNKTMPNYKTVADLKGKKIGVTAPGSSTSIMASYVLAKAGLKPTDVSFIGVGAAAGAISA 183 +NKT+PNYK++ADLKGKKIGV+APGSST+IMA++VL+K GLKPTDVSFIGVG +AGA+SA Sbjct: 119 SNKTLPNYKSIADLKGKKIGVSAPGSSTNIMANFVLSKGGLKPTDVSFIGVGTSAGALSA 178 Query: 184 IRSGQIDAIANLDPVISMLEQNNEIKVVADTRTLKDTNDVFGGPMPAATLYAPAAFVQKY 243 +RSGQIDAI+NLDPVI+ML+Q NEI+V+ADTR L DTN FGGPMPA TLYA AFV+KY Sbjct: 179 LRSGQIDAISNLDPVITMLQQKNEIRVIADTRKLSDTNAFFGGPMPAGTLYATEAFVKKY 238 Query: 244 PNTTQALTNAMVRALKWIQKAGPSDIIKAVPESYLLGDRSLYIDAFMKVRQAISPDGYFP 303 PNTTQALTNAMVRALKW+Q AGPSDI+K VPES+LLGDR+LY+DAFM +R A+SPDG FP Sbjct: 239 PNTTQALTNAMVRALKWLQTAGPSDIVKVVPESFLLGDRALYLDAFMNIRGALSPDGSFP 298 Query: 304 PGGPDTALRTLKAFEPDLASKKIDLSRTYTNE 335 G TALRTL AFEP+LA+KKIDLS+T+TNE Sbjct: 299 DAGAATALRTLTAFEPELANKKIDLSKTFTNE 330 >ref|YP_002005932.1| ABC transporter substrate-binding protein [Cupriavidus taiwanensis LMG 19424] emb|CAQ69869.1| putative ABC transporter, periplasmic_binding component [Cupriavidus taiwanensis LMG 19424] Length = 347 Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 241/329 (73%), Positives = 279/329 (84%) Query: 6 KQFAIALALFLAGYLTFNTNLFAQALEKPKVSIAVGGKNLFYYLPLTIAEQLGYFKDEGL 65 KQF IALALFLAG+ TF EK KV+IAVGGKNLFYYLPLTIAE+LGYFK+EGL Sbjct: 8 KQFLIALALFLAGWFTFGQAQAQGKPEKTKVTIAVGGKNLFYYLPLTIAERLGYFKEEGL 67 Query: 66 QVEISDFAGGAKALQAMVGGSADVVSGAFEHTINMQAKNQPIVAFVLQGRAPQIVLAVNN 125 VEI DFAGGAKALQA+VGGSADVVSGA+EHTIN+QAK Q FVLQGRAPQIVL V+N Sbjct: 68 DVEIVDFAGGAKALQAVVGGSADVVSGAYEHTINLQAKGQRYQEFVLQGRAPQIVLVVSN 127 Query: 126 KTMPNYKTVADLKGKKIGVTAPGSSTSIMASYVLAKAGLKPTDVSFIGVGAAAGAISAIR 185 KTMPN+K++ADLKGKKIGVTAPGSST++MA++VLAKAGLKP+DVSFIGVGA+AGA++A+R Sbjct: 128 KTMPNFKSIADLKGKKIGVTAPGSSTNMMANFVLAKAGLKPSDVSFIGVGASAGAVAAMR 187 Query: 186 SGQIDAIANLDPVISMLEQNNEIKVVADTRTLKDTNDVFGGPMPAATLYAPAAFVQKYPN 245 SGQIDA+ANLDPV+SML Q NE+++ +DTRTLKDT VFGG MP+ LYA AF+Q+ PN Sbjct: 188 SGQIDAMANLDPVVSMLTQKNEVRIASDTRTLKDTQAVFGGNMPSGCLYASQAFIQQNPN 247 Query: 246 TTQALTNAMVRALKWIQKAGPSDIIKAVPESYLLGDRSLYIDAFMKVRQAISPDGYFPPG 305 TTQALTNAMVRALKW+QKAGPSDI+K VPESYLLGDR+LY+ A+ KV++AISPDG P Sbjct: 248 TTQALTNAMVRALKWLQKAGPSDIVKTVPESYLLGDRALYLAAWEKVKEAISPDGTMPAD 307 Query: 306 GPDTALRTLKAFEPDLASKKIDLSRTYTN 334 GP TAL L F+ +L K I L TYTN Sbjct: 308 GPRTALNALGQFDAELKGKSIRLEETYTN 336 >ref|YP_584270.1| ABC transporter periplasmic protein [Cupriavidus metallidurans CH34] gb|ABF09001.1| ABC-type transporter, periplasmic component [Cupriavidus metallidurans CH34] Length = 347 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 238/329 (72%), Positives = 281/329 (85%) Query: 6 KQFAIALALFLAGYLTFNTNLFAQALEKPKVSIAVGGKNLFYYLPLTIAEQLGYFKDEGL 65 KQ IALALFLAG+ TF + EK KV+IAVGGKNLFYYLPLTIAE+LGYFK+EGL Sbjct: 8 KQVLIALALFLAGWFTFGSAQAQGKPEKSKVTIAVGGKNLFYYLPLTIAERLGYFKEEGL 67 Query: 66 QVEISDFAGGAKALQAMVGGSADVVSGAFEHTINMQAKNQPIVAFVLQGRAPQIVLAVNN 125 VEI DFAGGAKALQA+VGGSADVVSGA+EHTIN+QAK Q FVLQGRAPQIVL V+N Sbjct: 68 DVEIVDFAGGAKALQAVVGGSADVVSGAYEHTINLQAKGQQYQEFVLQGRAPQIVLVVSN 127 Query: 126 KTMPNYKTVADLKGKKIGVTAPGSSTSIMASYVLAKAGLKPTDVSFIGVGAAAGAISAIR 185 KTMPN+K++ADLKGKKIGVTAPGSST++MA++VLAKAGLKP+DVSFIGVGA+AGA++A+R Sbjct: 128 KTMPNFKSIADLKGKKIGVTAPGSSTNMMANFVLAKAGLKPSDVSFIGVGASAGAVAAMR 187 Query: 186 SGQIDAIANLDPVISMLEQNNEIKVVADTRTLKDTNDVFGGPMPAATLYAPAAFVQKYPN 245 SGQIDA+ANLDPVISML Q NE+K+ +DTRT+K+T VFGG MP+ LYA +F+Q+ PN Sbjct: 188 SGQIDAMANLDPVISMLTQKNEVKIASDTRTIKETQTVFGGNMPSGCLYASVSFIQQNPN 247 Query: 246 TTQALTNAMVRALKWIQKAGPSDIIKAVPESYLLGDRSLYIDAFMKVRQAISPDGYFPPG 305 TTQA+ NAMVRALKW+QKAGPSDI+K VPESYLLGDR+LY+ A+ KV++AISPDG P Sbjct: 248 TTQAMANAMVRALKWLQKAGPSDIVKTVPESYLLGDRALYLAAWDKVKEAISPDGMMPTD 307 Query: 306 GPDTALRTLKAFEPDLASKKIDLSRTYTN 334 GP TAL TL+ F+P+L K I L T+TN Sbjct: 308 GPHTALNTLQQFDPELKGKAIKLENTFTN 336