BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4595.p (283 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777060.1| nitrate/sulfonate/bicarbonate ABC transporte... 497 e-138 ref|YP_004753457.1| binding-protein-dependent transport systems ... 444 e-123 ref|YP_523990.1| binding-protein-dependent transport systems inn... 402 e-110 ref|YP_549097.1| binding-protein-dependent transport systems inn... 388 e-106 ref|YP_002944229.1| binding-protein-dependent transport systems ... 382 e-104 >ref|YP_003777060.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65152.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 283 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 279/283 (98%), Positives = 283/283 (100%) Query: 1 MWKLFKPNHKNIRFWQLMVLAIVLLVWHVATRNPQTAFFFGEPLKVAQRIWEWFTVGSGS 60 MWKLFKPNHKNIRFWQLMVLAIVL+VWHVATRNPQTAFFFGEPLKVAQRIWEWFTVGSGS Sbjct: 1 MWKLFKPNHKNIRFWQLMVLAIVLVVWHVATRNPQTAFFFGEPLKVAQRIWEWFTVGSGS 60 Query: 61 LEVGMGDTTFFTLSFPAEIYSHLLITLTETVLAFIIGTVFGLAIGLWLALSPTASAILDP 120 LEVG+GDTTFFTLSFPAEIYSHLLITLTETVLAF+IGTVFGLAIGLWLALSPTASAILDP Sbjct: 61 LEVGIGDTTFFTLSFPAEIYSHLLITLTETVLAFVIGTVFGLAIGLWLALSPTASAILDP 120 Query: 121 YVKAANSMPRVILAPIFAMWFGLGIWSKVALAVTLVFFIVFFNVYQGVKEVSPVVLANAR 180 YVKAANSMPRVILAPIFAMWFGLGIWSKVALAVTLVFFIVFFNVYQGVKEVSPVVLANAR Sbjct: 121 YVKAANSMPRVILAPIFAMWFGLGIWSKVALAVTLVFFIVFFNVYQGVKEVSPVVLANAR 180 Query: 181 MLGANARQLLRTVYLPSATSWVFSSLHTSIGLAFVGAVVGEYLGSARGVGYLILQAEGSF 240 MLGANARQLLRTVYLPSATSWVFSSLHTSIGLAFVGAVVGEYLGSARGVGYLILQAEG+F Sbjct: 181 MLGANARQLLRTVYLPSATSWVFSSLHTSIGLAFVGAVVGEYLGSARGVGYLILQAEGTF 240 Query: 241 DINTVFAGIVVLTIFALVLDLAVGVIEKRLMKWQPKSGETEKL 283 DINTVFAGIVVLTIFALVLDLAVGVIEKRLMKWQPKSGETEKL Sbjct: 241 DINTVFAGIVVLTIFALVLDLAVGVIEKRLMKWQPKSGETEKL 283 >ref|YP_004753457.1| binding-protein-dependent transport systems inner membrane component [Collimonas fungivorans Ter331] gb|AEK62634.1| binding-protein-dependent transport systems inner membrane component [Collimonas fungivorans Ter331] Length = 283 Score = 444 bits (1142), Expect = e-123, Method: Composition-based stats. Identities = 240/283 (84%), Positives = 264/283 (93%) Query: 1 MWKLFKPNHKNIRFWQLMVLAIVLLVWHVATRNPQTAFFFGEPLKVAQRIWEWFTVGSGS 60 MWK KPN+KN+R +Q++VL + L+WH+ATRNPQTAFFFGEP+KV QRIW+WFTVGSGS Sbjct: 1 MWKAIKPNYKNLRAYQVLVLLVFFLIWHLATRNPQTAFFFGEPIKVLQRIWQWFTVGSGS 60 Query: 61 LEVGMGDTTFFTLSFPAEIYSHLLITLTETVLAFIIGTVFGLAIGLWLALSPTASAILDP 120 +EVG GD T+FTL+FPAEIYSHLL+TLTET+LAF IGTV GL +GLWLALSP SAILDP Sbjct: 61 VEVGFGDHTWFTLTFPAEIYSHLLVTLTETMLAFGIGTVLGLGVGLWLALSPLTSAILDP 120 Query: 121 YVKAANSMPRVILAPIFAMWFGLGIWSKVALAVTLVFFIVFFNVYQGVKEVSPVVLANAR 180 Y+KA+N+MPRVILAPIFAMWFGLGIWSKVALAVTLVFFIVFFNVYQGVKEVSPVVLANAR Sbjct: 121 YIKASNAMPRVILAPIFAMWFGLGIWSKVALAVTLVFFIVFFNVYQGVKEVSPVVLANAR 180 Query: 181 MLGANARQLLRTVYLPSATSWVFSSLHTSIGLAFVGAVVGEYLGSARGVGYLILQAEGSF 240 MLGAN RQLLRTVYLPSATSWVFSSLHTS+GLAFVG +VGEYLGSARGVGYLILQAEGSF Sbjct: 181 MLGANQRQLLRTVYLPSATSWVFSSLHTSVGLAFVGVIVGEYLGSARGVGYLILQAEGSF 240 Query: 241 DINTVFAGIVVLTIFALVLDLAVGVIEKRLMKWQPKSGETEKL 283 DINTVFAGI+VLT FALVLD VG+IEKRLMKWQPKSGETE+L Sbjct: 241 DINTVFAGILVLTAFALVLDTVVGMIEKRLMKWQPKSGETERL 283 >ref|YP_523990.1| binding-protein-dependent transport systems inner membrane component [Rhodoferax ferrireducens T118] gb|ABD70459.1| binding-protein-dependent transport systems inner membrane component [Rhodoferax ferrireducens T118] Length = 283 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 229/283 (80%), Positives = 256/283 (90%) Query: 1 MWKLFKPNHKNIRFWQLMVLAIVLLVWHVATRNPQTAFFFGEPLKVAQRIWEWFTVGSGS 60 MW+ +P N+R WQ++VL + L+WH +R+ Q AFFFGEPL V R+W WFT GSG+ Sbjct: 1 MWRRIRPTSGNVRIWQVLVLLLFFLLWHWISRDIQVAFFFGEPLIVLGRVWAWFTSGSGN 60 Query: 61 LEVGMGDTTFFTLSFPAEIYSHLLITLTETVLAFIIGTVFGLAIGLWLALSPTASAILDP 120 LEVG+GD+T+FTL FP EIYSHLLITLTET+LAF IGTV GL +GLWLALSP SAILDP Sbjct: 61 LEVGLGDSTWFTLHFPGEIYSHLLITLTETLLAFGIGTVMGLGVGLWLALSPLTSAILDP 120 Query: 121 YVKAANSMPRVILAPIFAMWFGLGIWSKVALAVTLVFFIVFFNVYQGVKEVSPVVLANAR 180 Y+KAANSMPRVILAPIF MWFGLGIWSKVALA+TLVFFIVFFNVYQGVKEVSPVVLANAR Sbjct: 121 YIKAANSMPRVILAPIFGMWFGLGIWSKVALAITLVFFIVFFNVYQGVKEVSPVVLANAR 180 Query: 181 MLGANARQLLRTVYLPSATSWVFSSLHTSIGLAFVGAVVGEYLGSARGVGYLILQAEGSF 240 MLGANARQLLR+VYLPSATSWVFSSLHTS+GLAFVGA+VGEY+GSARGVGYLILQAEG+F Sbjct: 181 MLGANARQLLRSVYLPSATSWVFSSLHTSVGLAFVGAIVGEYMGSARGVGYLILQAEGTF 240 Query: 241 DINTVFAGIVVLTIFALVLDLAVGVIEKRLMKWQPKSGETEKL 283 DINTVFAGI+VLT+FALVLD AVG++EKRLMKWQPKSGETEKL Sbjct: 241 DINTVFAGILVLTLFALVLDGAVGLVEKRLMKWQPKSGETEKL 283 >ref|YP_549097.1| binding-protein-dependent transport systems inner membrane component [Polaromonas sp. JS666] gb|ABE44199.1| binding-protein-dependent transport systems inner membrane component [Polaromonas sp. JS666] Length = 279 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 217/285 (76%), Positives = 238/285 (83%), Gaps = 8/285 (2%) Query: 1 MWKLFKPNHKNIRFWQLMVLAIVLLVWHVATRNPQTAFFFGEPLKVAQRIWEWFTVGSGS 60 MW+ KP+ KN+R WQ +L +L WH+A+R+ Q AFF GEP+KVA R+W WF Sbjct: 1 MWRHIKPSGKNLRIWQAGLLVFMLAGWHLASRDQQIAFFLGEPIKVAGRVWSWF------ 54 Query: 61 LEVGMGDTTFFTLSFP--AEIYSHLLITLTETVLAFIIGTVFGLAIGLWLALSPTASAIL 118 + G G + F P A+IY HL TL ETVLAF IGTV GL GLWLAL+PTASAIL Sbjct: 55 MPFGFGGSRLFPDGLPGNADIYLHLGTTLLETVLAFGIGTVLGLVCGLWLALAPTASAIL 114 Query: 119 DPYVKAANSMPRVILAPIFAMWFGLGIWSKVALAVTLVFFIVFFNVYQGVKEVSPVVLAN 178 DPY+KAANSMPRVILAPIFA+WFGLGIWSKVALAVTLVFFIVFFNVYQGVKEVSPVVLAN Sbjct: 115 DPYIKAANSMPRVILAPIFALWFGLGIWSKVALAVTLVFFIVFFNVYQGVKEVSPVVLAN 174 Query: 179 ARMLGANARQLLRTVYLPSATSWVFSSLHTSIGLAFVGAVVGEYLGSARGVGYLILQAEG 238 ARMLGAN RQLLRTVYLPSATSWVFSSLHTS+GLAFVGAVVGEYLGSARGVGYLILQAEG Sbjct: 175 ARMLGANHRQLLRTVYLPSATSWVFSSLHTSVGLAFVGAVVGEYLGSARGVGYLILQAEG 234 Query: 239 SFDINTVFAGIVVLTIFALVLDLAVGVIEKRLMKWQPKSGETEKL 283 +FD+NTVFAGI VLT FALVLD VG +EKRLMKWQP+SGETEKL Sbjct: 235 TFDVNTVFAGIAVLTAFALVLDGIVGKLEKRLMKWQPRSGETEKL 279 >ref|YP_002944229.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus S110] gb|ACS18963.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus S110] Length = 277 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 216/276 (78%), Positives = 237/276 (85%), Gaps = 4/276 (1%) Query: 8 NHKNIRFWQLMVLAIVLLVWHVATRNPQTAFFFGEPLKVAQRIWEWFTVGSGSLEVGMGD 67 N +N RFWQL++LAI+L+ WH+A+RN Q AFF GEP++VA RIW WF EV Sbjct: 6 NERNARFWQLVLLAIILVGWHLASRNQQIAFFLGEPIQVAGRIWSWFL----PFEVPPNL 61 Query: 68 TTFFTLSFPAEIYSHLLITLTETVLAFIIGTVFGLAIGLWLALSPTASAILDPYVKAANS 127 L A+IY HL TL ETVLAF IGTV GLA GLWLAL+PTAS ILDPY+KAANS Sbjct: 62 LFPEGLKGNADIYRHLGTTLLETVLAFGIGTVLGLACGLWLALAPTASLILDPYIKAANS 121 Query: 128 MPRVILAPIFAMWFGLGIWSKVALAVTLVFFIVFFNVYQGVKEVSPVVLANARMLGANAR 187 MPRVILAPIFA+WFGLGIWSKVALAVTLVFFIVFFNVYQGV+EVSPVVLANA+MLGAN R Sbjct: 122 MPRVILAPIFALWFGLGIWSKVALAVTLVFFIVFFNVYQGVREVSPVVLANAKMLGANQR 181 Query: 188 QLLRTVYLPSATSWVFSSLHTSIGLAFVGAVVGEYLGSARGVGYLILQAEGSFDINTVFA 247 QLLRTVYLPSATSWVFSSLHTS+GLAFVGAVVGEYLGSARGVGYLILQAEG+FD+NTVFA Sbjct: 182 QLLRTVYLPSATSWVFSSLHTSVGLAFVGAVVGEYLGSARGVGYLILQAEGTFDVNTVFA 241 Query: 248 GIVVLTIFALVLDLAVGVIEKRLMKWQPKSGETEKL 283 GIVVLT FAL+LD VG+IEKRLMKWQP+SGETEKL Sbjct: 242 GIVVLTAFALLLDGLVGLIEKRLMKWQPRSGETEKL 277