BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4594.p (210 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002535747.1| HTH-type transcriptional repressor cytR, put... 138 4e-31 ref|YP_004755065.1| gluconate utilization system Gnt-I transcrip... 98 6e-19 ref|ZP_08666592.1| LacI family transcriptional regulator [Paraco... 95 6e-18 ref|YP_001205143.1| LacI family transcriptional regulator [Brady... 92 6e-17 ref|YP_001239550.1| LacI family transcription regulator [Bradyrh... 89 4e-16 >ref|XP_002535747.1| HTH-type transcriptional repressor cytR, putative [Ricinus communis] gb|EEF26638.1| HTH-type transcriptional repressor cytR, putative [Ricinus communis] Length = 198 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 74/149 (49%), Positives = 100/149 (67%), Gaps = 7/149 (4%) Query: 58 AHGRRPGFCQALARHGIKPLVIDTGNDVSPAAGGLALRQALKQQPGLQAVACANDVLALG 117 A R GF + +A+ GI+ V D D SP G AL L P + A+AC+NDV+ALG Sbjct: 49 ARQRCEGFTRTMAKAGIETRVEDVAGDASPQTGAHALASMLNDMPNVDAIACSNDVIALG 108 Query: 118 VLFEAQHRGLAVPRQLAVTGFGNLPYSQVCVPPLTTVQPHAAEIGLRVAQELLAQLQRDE 177 VLFEAQ RG+ VP++L V GFG+LP+S+ CVPPLTT+QP A EIGLR+AQEL+ + + + Sbjct: 109 VLFEAQRRGIPVPQRLRVAGFGDLPFSEECVPPLTTIQPRATEIGLRIAQELMERTEHEP 168 Query: 178 APEQEEDSDDGATKVVDVGFELILRQSSS 206 + E ++VDVGFEL++R S+S Sbjct: 169 LADIE-------PRIVDVGFELVVRASTS 190 >ref|YP_004755065.1| gluconate utilization system Gnt-I transcriptional repressor [Collimonas fungivorans Ter331] gb|AEK64242.1| Gluconate utilization system Gnt-I transcriptional repressor [Collimonas fungivorans Ter331] Length = 350 Score = 98.2 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 64/146 (43%), Positives = 83/146 (56%), Gaps = 11/146 (7%) Query: 61 RRPGFCQALARHGIKP-LVIDTGNDVSPAAGGLALRQALKQQPGLQAVACANDVLALGVL 119 RR GF +AL+ GI P + + T + G L Q L+Q P AV C ND LALGVL Sbjct: 215 RRHGFRKALSEAGINPDIEVLTPAPSTVELGTKMLGQILQQTPACDAVFCCNDDLALGVL 274 Query: 120 FEAQHRGLAVPRQLAVTGFGNLPYSQVCVPPLTTVQPHAAEIGLRVAQELLAQLQRDEAP 179 FE Q RGL+VP Q+A+ GF +LP+S P +TT+ +IG AQ LL +L R E P Sbjct: 275 FECQRRGLSVPGQMAIAGFNDLPWSAFANPGITTIVTPRYDIGFTAAQ-LLIKLLRHETP 333 Query: 180 EQEEDSDDGATKVVDVGFELILRQSS 205 E T VD+GF+L +R S+ Sbjct: 334 E---------TTSVDLGFKLAIRSST 350 >ref|ZP_08666592.1| LacI family transcriptional regulator [Paracoccus sp. TRP] Length = 330 Score = 95.1 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 63/162 (38%), Positives = 88/162 (54%), Gaps = 13/162 (8%) Query: 47 AGCHPYRLRGGAHGRRPGFCQALARHGIKP--LVIDTGNDVSPAAGGLALRQALKQQPGL 104 G P RGG RR GF +A+ RHG+ LV V A G AL L QPG Sbjct: 180 GGESPRDPRGGQ--RRSGFVEAMRRHGLDDTRLVPAGTAPVGMAEGAQALGALLDSQPGT 237 Query: 105 QAVACANDVLALGVLFEAQHRGLAVPRQLAVTGFGNLPYSQVCVPPLTTVQPHAAEIGLR 164 +AV C +D++A GV+ E Q RG+ +P LAV GFGN ++ VP LTT+ HA IG + Sbjct: 238 RAVVCVSDLVAFGVISECQRRGIGIPGDLAVAGFGNYEIGRISVPRLTTIDVHAGSIGSK 297 Query: 165 VAQELLAQLQRDEAPEQEEDSDDGATKVVDVGFELILRQSSS 206 A ++A L++D D A +++ +LI+R+SS+ Sbjct: 298 AADLIVALLRQDS---------DAAPARIEIQTDLIVRESSA 330 >ref|YP_001205143.1| LacI family transcriptional regulator [Bradyrhizobium sp. ORS 278] emb|CAL76906.1| putative transcriptional regulatory protein, LacI family [Bradyrhizobium sp. ORS 278] Length = 364 Score = 91.7 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 56/148 (37%), Positives = 83/148 (56%), Gaps = 12/148 (8%) Query: 61 RRPGFCQALARHGI--KPLVIDTGNDVSPAAGGLALRQALKQQPGLQAVACANDVLALGV 118 R G+ A+ G+ L++ T S GG + + P L AV CAND LALGV Sbjct: 202 RLQGYQNAMKNAGLFDPRLIVTTAVPTSTTVGGSLFSDLMLRAPDLDAVFCANDDLALGV 261 Query: 119 LFEAQHRGLAVPRQLAVTGFGNLPYSQVCVPPLTTVQPHAAEIGLRVAQELLAQLQRDEA 178 LFE Q R +AVP QLA+ GF ++ + VP LT+V+ + E+GLR A+ ++ +++ Sbjct: 262 LFECQRRHIAVPEQLAIVGFNDMEFMASAVPTLTSVRTNRYEMGLRAAKMIMDEVEGRPV 321 Query: 179 PEQEEDSDDGATKVVDVGFELILRQSSS 206 E +VVD+GFE++ RQSS+ Sbjct: 322 AE----------RVVDLGFEVMERQSST 339 >ref|YP_001239550.1| LacI family transcription regulator [Bradyrhizobium sp. BTAi1] gb|ABQ35644.1| transcriptional regulator, LacI family [Bradyrhizobium sp. BTAi1] Length = 356 Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 50/132 (37%), Positives = 75/132 (56%), Gaps = 10/132 (7%) Query: 77 LVIDTGNDVSPAAGGLALRQALKQQPGLQAVACANDVLALGVLFEAQHRGLAVPRQLAVT 136 L++ T S GG + + P + AV CAND LALGVLFE Q R +AVP Q+A+ Sbjct: 220 LIVTTAVPTSTTMGGSLFSDLMLRAPDVDAVFCANDDLALGVLFECQRRHIAVPEQIAIV 279 Query: 137 GFGNLPYSQVCVPPLTTVQPHAAEIGLRVAQELLAQLQRDEAPEQEEDSDDGATKVVDVG 196 GF ++ + VP LT+V+ + E+GLR A ++ +++ E +VVD+G Sbjct: 280 GFNDMEFMASAVPSLTSVRTNRYEMGLRAATMIMDEIEGRPVTE----------RVVDLG 329 Query: 197 FELILRQSSSHR 208 F+++ RQSS R Sbjct: 330 FQVMERQSSQQR 341