BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4593.p (220 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08638474.1| transcriptional regulator [Halomonas sp. TD01... 213 2e-53 ref|YP_003452287.1| transcriptional regulator [Azospirillum sp. ... 209 2e-52 ref|YP_001235544.1| alanine racemase [Acidiphilium cryptum JF-5]... 171 5e-41 ref|YP_004284979.1| LacI family transcriptional regulator [Acidi... 171 6e-41 gb|EGH30460.1| LacI family transcription regulator [Pseudomonas ... 169 4e-40 >ref|ZP_08638474.1| transcriptional regulator [Halomonas sp. TD01] gb|EGP18255.1| transcriptional regulator [Halomonas sp. TD01] Length = 346 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 111/196 (56%), Positives = 135/196 (68%) Query: 10 RSRRGTNRVTMEDVAARAKVSASSVSLYLRNPEAVSPRLSPRIKRAIDTLGYVPNKLAGS 69 R+RR T RVTM DVA A VSAS+VSLYLR P+ VS +L RI+ AIDTLGYVPN +AG+ Sbjct: 6 RARRSTQRVTMNDVAKLADVSASTVSLYLRKPDEVSTQLGKRIQSAIDTLGYVPNLMAGA 65 Query: 70 LAAARTRAIGVIVPSLGNAFFTETVAALQKEFDRHDYQLLLGATEYDLERETELVRTFLS 129 LAAARTR IGV+VPS+ NA F TV +QK YQLLLG ++Y+ E VRTFLS Sbjct: 66 LAAARTRVIGVVVPSMVNAIFASTVNTMQKTLGAEGYQLLLGHSDYEEAEEEAAVRTFLS 125 Query: 130 WSPTALVVTGCHHNEATRTLLRMADTPVAEMWEIGEEPFHLQVGFSHVAVGEVMAAHLHQ 189 WSP+A+V+TG H+ TR +L ++ PV EMWE+G P VGFSH VG A HL + Sbjct: 126 WSPSAMVLTGLTHSRETRRMLSNSNVPVVEMWELGSNPLDTLVGFSHHDVGYTQARHLIE 185 Query: 190 QGATRIAFVGARMDAD 205 G RIAF+G R+ D Sbjct: 186 AGCQRIAFIGTRLSVD 201 >ref|YP_003452287.1| transcriptional regulator [Azospirillum sp. B510] dbj|BAI75743.1| transcriptional regulator [Azospirillum sp. B510] Length = 354 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 109/206 (52%), Positives = 137/206 (66%), Gaps = 3/206 (1%) Query: 3 QNNKTAARSRRGTNRVTMEDVAARAKVSASSVSLYLRNPEAVSPRLSPRIKRAIDTLGYV 62 Q +T R+RRGT RVTM DVA A VS S+VSLYLR PEAVS L+ RI R ID +GYV Sbjct: 2 QTTETRKRARRGTQRVTMTDVATAADVSPSTVSLYLRRPEAVSRHLAERIARVIDEMGYV 61 Query: 63 PNKLAGSLAAARTRAIGVIVPSLGNAFFTETVAALQKEFDRHDYQLLLGATEYDLERETE 122 PN +AGSLAAAR+R +GVI+PS+ N+FF ET LQ F YQ LLG +E+ E E Sbjct: 62 PNLVAGSLAAARSRTVGVILPSILNSFFAETYNTLQGMFQAAHYQTLLGVSEFSPEEEEG 121 Query: 123 LVRTFLSWSPTALVVTGCHHNEATRTLLRMADTPVAEMWEIGEEP---FHLQVGFSHVAV 179 L+R FL+WSP A+VVTG HH E TR +L PV EMW++ P + VGFSH V Sbjct: 122 LIRAFLAWSPAAMVVTGFHHTERTRAMLASCGVPVVEMWDMPGHPGEAVGISVGFSHFEV 181 Query: 180 GEVMAAHLHQQGATRIAFVGARMDAD 205 G + +HL+ QG+ ++A++GA D Sbjct: 182 GRMQTSHLYDQGSRKVAYIGAAAHQD 207 >ref|YP_001235544.1| alanine racemase [Acidiphilium cryptum JF-5] gb|ABQ31625.1| transcriptional regulator, LacI family [Acidiphilium cryptum JF-5] Length = 365 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 93/198 (46%), Positives = 121/198 (61%) Query: 18 VTMEDVAARAKVSASSVSLYLRNPEAVSPRLSPRIKRAIDTLGYVPNKLAGSLAAARTRA 77 VT+ +VAA A V+ +VS L NP +VSP L RI++A++ LGYVPN++AG+LA+ARTR Sbjct: 35 VTLNEVAAGAGVAPITVSRALNNPASVSPALRSRIEQAVEQLGYVPNRMAGALASARTRV 94 Query: 78 IGVIVPSLGNAFFTETVAALQKEFDRHDYQLLLGATEYDLERETELVRTFLSWSPTALVV 137 I VIVPSL N F E + +Q+ + YQ+LLG+T YDL E L T L W+P ++V Sbjct: 95 IPVIVPSLSNVVFVEVIEGIQEAVEAQGYQMLLGSTGYDLGHEAALAATLLGWAPPGMMV 154 Query: 138 TGCHHNEATRTLLRMADTPVAEMWEIGEEPFHLQVGFSHVAVGEVMAAHLHQQGATRIAF 197 G H T TLLR A P+ E E G P + VG SHV G MA HL +G RI F Sbjct: 155 AGLRHETRTATLLRNAGIPIVEFMETGRAPIDMNVGLSHVRAGAAMAEHLLARGYRRIGF 214 Query: 198 VGARMDADRDFARHWHGM 215 VG RM D + + G+ Sbjct: 215 VGLRMKDDYRARQRYDGL 232 >ref|YP_004284979.1| LacI family transcriptional regulator [Acidiphilium multivorum AIU301] dbj|BAJ82097.1| LacI family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 365 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 93/198 (46%), Positives = 121/198 (61%) Query: 18 VTMEDVAARAKVSASSVSLYLRNPEAVSPRLSPRIKRAIDTLGYVPNKLAGSLAAARTRA 77 VT+ +VAA A V+ +VS L NP +VSP L RI++A++ LGYVPN++AG+LA+ARTR Sbjct: 35 VTLNEVAAGAGVAPIAVSRALNNPASVSPALRSRIEQAVEQLGYVPNRMAGALASARTRV 94 Query: 78 IGVIVPSLGNAFFTETVAALQKEFDRHDYQLLLGATEYDLERETELVRTFLSWSPTALVV 137 I VIVPSL N F E + +Q+ + YQ+LLG+T YDL E L T L W+P ++V Sbjct: 95 IPVIVPSLSNVVFVEVIEGIQEAVEAQGYQMLLGSTGYDLGHEAALAATLLGWAPPGMMV 154 Query: 138 TGCHHNEATRTLLRMADTPVAEMWEIGEEPFHLQVGFSHVAVGEVMAAHLHQQGATRIAF 197 G H T TLLR A P+ E E G P + VG SHV G MA HL +G RI F Sbjct: 155 AGLRHETRTATLLRNAGIPIVEFMETGRAPIDMNVGLSHVRAGAAMAEHLLARGYRRIGF 214 Query: 198 VGARMDADRDFARHWHGM 215 VG RM D + + G+ Sbjct: 215 VGLRMKDDYRARQRYDGL 232 >gb|EGH30460.1| LacI family transcription regulator [Pseudomonas syringae pv. japonica str. M301072PT] Length = 348 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 86/202 (42%), Positives = 118/202 (58%) Query: 4 NNKTAARSRRGTNRVTMEDVAARAKVSASSVSLYLRNPEAVSPRLSPRIKRAIDTLGYVP 63 + K R RRG RVT+ VA +A VSA +VS Y PE VSP L RI + LGYVP Sbjct: 3 DEKPLIRKRRGAGRVTITAVARQAGVSAITVSRYFNQPEQVSPELRERIASTVSALGYVP 62 Query: 64 NKLAGSLAAARTRAIGVIVPSLGNAFFTETVAALQKEFDRHDYQLLLGATEYDLERETEL 123 N +AG LA+AR+R + +++P++ F T+ RH +QLLL ++ + E+E Sbjct: 63 NLVAGGLASARSRVVAMVIPNISGPIFANTIQGFSDTLSRHGFQLLLASSYFSAEQEESA 122 Query: 124 VRTFLSWSPTALVVTGCHHNEATRTLLRMADTPVAEMWEIGEEPFHLQVGFSHVAVGEVM 183 VR FL WSP ALV+T H+ AT +++ D PV E W+ + +Q+GFSH VG + Sbjct: 123 VRAFLGWSPAALVLTSRFHSPATENMIKQTDVPVIETWDHQPDRSPIQIGFSHYDVGVMA 182 Query: 184 AAHLHQQGATRIAFVGARMDAD 205 A +LH QG RIAFV + D Sbjct: 183 ARYLHDQGYRRIAFVQNSIAGD 204