BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4587.p (253 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_06688824.1| conserved hypothetical protein [Achromobacter... 197 2e-48 ref|YP_003980452.1| hypothetical protein AXYL_04418 [Achromobact... 192 5e-47 ref|NP_884642.1| putative integral membrane protein [Bordetella ... 171 9e-41 ref|NP_880697.1| putative integral membrane protein [Bordetella ... 168 6e-40 gb|EGP47982.1| membrane protein 59 [Achromobacter xylosoxidans A... 166 3e-39 >ref|ZP_06688824.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gb|EFF74212.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 254 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 133/245 (54%), Positives = 181/245 (73%), Gaps = 1/245 (0%) Query: 6 IGSHLLFVACVALATFVQSLTGFAFGLVLLGLVAMLHLAPLAVAANVVTVMVLANAAV-I 64 I HLLF+ACVALAT+ Q++TGFAFGLVLLGL + LA +A AN+V+V+ L NAAV + Sbjct: 3 ISHHLLFLACVALATYAQTMTGFAFGLVLLGLSGVFQLASVAEVANIVSVLSLVNAAVTL 62 Query: 65 VRTAPDLPRALIVPAFGSSLIGVGLGACLLAWMSDHAIGVLRLALGLAILACSLLLVLRT 124 R P + +L+ PA +SLIGV +G L W+S +L+L LG+ ILAC++LLV R Sbjct: 63 ARAKPQVNWSLMRPAMFASLIGVAIGVAALTWISGSMSVLLQLLLGVTILACAVLLVARA 122 Query: 125 QVREQLSSAPSFAFFGVLSGIMGGVFASAGPPMVFHLYRQPLDRVVVRDTLVLLFAVNAV 184 + EQLSS SF FFG +SG++GG+F+SAGPPMV+HLYRQPL +R++L++LF++NAV Sbjct: 123 KPLEQLSSKASFLFFGGISGVLGGLFSSAGPPMVYHLYRQPLPLASIRNSLLVLFSLNAV 182 Query: 185 LRLVIVLAQGRFDHASLALSLEALPVVLGVTWLARRHPPQWSPLTVRRIVFLLLLVAGGS 244 +RLV+V QG F +S +S++ALPVV+GVTW+ARR+ S TV+ +VF+LLL AG Sbjct: 183 VRLVLVTGQGEFMASSFWMSVQALPVVIGVTWVARRYSTAGSMKTVKCMVFVLLLAAGMG 242 Query: 245 LVAPA 249 L+ PA Sbjct: 243 LIVPA 247 >ref|YP_003980452.1| hypothetical protein AXYL_04418 [Achromobacter xylosoxidans A8] gb|ADP17737.1| putative membrane protein 59 [Achromobacter xylosoxidans A8] Length = 254 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 133/246 (54%), Positives = 177/246 (71%), Gaps = 1/246 (0%) Query: 6 IGSHLLFVACVALATFVQSLTGFAFGLVLLGLVAMLHLAPLAVAANVVTVMVLANAAV-I 64 I +LLF+ACVALAT+ Q++TGFAFGLVLLGL + LA ++ ANVV+V+ L NAAV + Sbjct: 3 ISQYLLFLACVALATYAQTMTGFAFGLVLLGLSGVFQLASVSEVANVVSVLSLVNAAVTL 62 Query: 65 VRTAPDLPRALIVPAFGSSLIGVGLGACLLAWMSDHAIGVLRLALGLAILACSLLLVLRT 124 R P + +L+ PA SSL+GVG G LAW+S +L+L LG IL C++LLV R Sbjct: 63 ARAKPQVNWSLMRPAMASSLVGVGAGVAALAWISGSMSVLLQLLLGCTILGCAVLLVARA 122 Query: 125 QVREQLSSAPSFAFFGVLSGIMGGVFASAGPPMVFHLYRQPLDRVVVRDTLVLLFAVNAV 184 Q +SS SF FFG +SG++GG+F+SAGPPMV+HLYRQPL +R++L++LF++NAV Sbjct: 123 QPLASVSSRGSFVFFGAVSGVLGGLFSSAGPPMVYHLYRQPLPLAAIRNSLLILFSLNAV 182 Query: 185 LRLVIVLAQGRFDHASLALSLEALPVVLGVTWLARRHPPQWSPLTVRRIVFLLLLVAGGS 244 +RL +V QG F +S LSL ALPVV+GVTW+ARR+ S TV+R+VF+LLL AG Sbjct: 183 VRLALVTGQGAFMASSFWLSLLALPVVIGVTWVARRYSTAGSMQTVKRMVFVLLLAAGMG 242 Query: 245 LVAPAL 250 L+ PA Sbjct: 243 LIVPAF 248 >ref|NP_884642.1| putative integral membrane protein [Bordetella parapertussis 12822] ref|NP_888401.1| integral membrane protein [Bordetella bronchiseptica RB50] emb|CAE37703.1| putative integral membrane protein [Bordetella parapertussis] emb|CAE32353.1| putative integral membrane protein [Bordetella bronchiseptica RB50] Length = 256 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 126/245 (51%), Positives = 172/245 (70%), Gaps = 1/245 (0%) Query: 6 IGSHLLFVACVALATFVQSLTGFAFGLVLLGLVAMLHLAPLAVAANVVTVMVLANAAVIV 65 I H+LF+ACVALAT+ Q++TGFAFGLVLLGL +L +APL AN V+++ L NA V++ Sbjct: 3 ILQHVLFLACVALATYAQTMTGFAFGLVLLGLTGLLAVAPLPDMANTVSILTLVNALVVI 62 Query: 66 -RTAPDLPRALIVPAFGSSLIGVGLGACLLAWMSDHAIGVLRLALGLAILACSLLLVLRT 124 R P + L+ PA SSL GV LG +L W+S A +L+ LGL ILAC++ LV R Sbjct: 63 GRARPQVDWTLVRPALVSSLAGVALGVFMLDWISGSAAVLLQWLLGLTILACAIQLVARA 122 Query: 125 QVREQLSSAPSFAFFGVLSGIMGGVFASAGPPMVFHLYRQPLDRVVVRDTLVLLFAVNAV 184 + ++SS SF FGV+SG++GG+F+SAGPPMV+HLYRQPL +R++L++LF+ NA+ Sbjct: 123 RPLARVSSRRSFVGFGVVSGVLGGLFSSAGPPMVYHLYRQPLPLATIRNSLLILFSCNAM 182 Query: 185 LRLVIVLAQGRFDHASLALSLEALPVVLGVTWLARRHPPQWSPLTVRRIVFLLLLVAGGS 244 RL +V AQG + LSLEA PVV+ +TWL RR+ S TV+R+VF+LL+ AG Sbjct: 183 TRLALVGAQGSLHTITFWLSLEAFPVVVALTWLVRRYASARSIHTVKRLVFVLLVAAGLG 242 Query: 245 LVAPA 249 L+ PA Sbjct: 243 LLVPA 247 >ref|NP_880697.1| putative integral membrane protein [Bordetella pertussis Tohama I] emb|CAE42307.1| putative integral membrane protein [Bordetella pertussis Tohama I] gb|AEE67313.1| putative integral membrane protein [Bordetella pertussis CS] Length = 256 Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats. Identities = 124/245 (50%), Positives = 171/245 (69%), Gaps = 1/245 (0%) Query: 6 IGSHLLFVACVALATFVQSLTGFAFGLVLLGLVAMLHLAPLAVAANVVTVMVLANAAVIV 65 I H+LF+ACVALAT+ Q++TGFAFGLVLLGL +L +APL AN V+++ L NA V++ Sbjct: 3 ILQHVLFLACVALATYAQTMTGFAFGLVLLGLTGLLAVAPLPDMANTVSILTLVNALVVI 62 Query: 66 -RTAPDLPRALIVPAFGSSLIGVGLGACLLAWMSDHAIGVLRLALGLAILACSLLLVLRT 124 R P + L+ PA SSL GV LG +L W+S A +L+ LGL ILAC++ LV R Sbjct: 63 DRARPQVDWTLVRPALVSSLAGVALGVFMLDWISGSAAVLLQWLLGLTILACAIQLVARA 122 Query: 125 QVREQLSSAPSFAFFGVLSGIMGGVFASAGPPMVFHLYRQPLDRVVVRDTLVLLFAVNAV 184 + ++SS SF FGV+SG++GG+F+SAGPPMV+HLYRQPL +R++L++LF+ NA+ Sbjct: 123 RPLARVSSRRSFVGFGVVSGVLGGLFSSAGPPMVYHLYRQPLPLATIRNSLLILFSCNAM 182 Query: 185 LRLVIVLAQGRFDHASLALSLEALPVVLGVTWLARRHPPQWSPLTVRRIVFLLLLVAGGS 244 RL +V AQ + LSL+A PVV+ +TWL RR+ S TV+R+VF+LL+ AG Sbjct: 183 TRLALVGAQDSLHTITFWLSLKAFPVVVALTWLVRRYASARSIHTVKRLVFVLLVAAGLG 242 Query: 245 LVAPA 249 L+ PA Sbjct: 243 LLVPA 247 >gb|EGP47982.1| membrane protein 59 [Achromobacter xylosoxidans AXX-A] Length = 254 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 135/245 (55%), Positives = 178/245 (72%), Gaps = 1/245 (0%) Query: 6 IGSHLLFVACVALATFVQSLTGFAFGLVLLGLVAMLHLAPLAVAANVVTVMVLANAAV-I 64 I H+LF+ACVALAT+ Q++TGFAFGLVLLGL + LA ++ ANVV+V+ L NA V + Sbjct: 3 IFQHVLFLACVALATYAQTMTGFAFGLVLLGLSGVFQLASVSEVANVVSVLSLVNAVVTL 62 Query: 65 VRTAPDLPRALIVPAFGSSLIGVGLGACLLAWMSDHAIGVLRLALGLAILACSLLLVLRT 124 R P + L+ PA SSL GV +G LAW+S +L+L LGL ILAC++LLV RT Sbjct: 63 ARAKPQVNWRLMTPALVSSLAGVAVGVVALAWISGAMAVLLQLLLGLTILACAVLLVART 122 Query: 125 QVREQLSSAPSFAFFGVLSGIMGGVFASAGPPMVFHLYRQPLDRVVVRDTLVLLFAVNAV 184 Q E+LSS SF FG +SG++GG+F+SAGPPMV+HLYRQPL +R++L++LF++NAV Sbjct: 123 QPLERLSSRASFVLFGGVSGVLGGLFSSAGPPMVYHLYRQPLPLASIRNSLLVLFSLNAV 182 Query: 185 LRLVIVLAQGRFDHASLALSLEALPVVLGVTWLARRHPPQWSPLTVRRIVFLLLLVAGGS 244 +RL +V QG F S LSL+ALPVV+GVTW+ARR+ S TV+R+VF+LLL AG Sbjct: 183 VRLALVTGQGTFMATSFWLSLQALPVVIGVTWVARRYATAGSMKTVKRMVFVLLLAAGLG 242 Query: 245 LVAPA 249 L+ PA Sbjct: 243 LIVPA 247