BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4582.p (361 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_04947083.1| Outer membrane protein (porin) [Burkholderia ... 198 1e-48 gb|EGD02588.1| outer membrane protein (porin) [Burkholderia sp. ... 162 1e-37 ref|ZP_02906917.1| hypothetical protein BamMEX5DRAFT_2271 [Burkh... 138 1e-30 ref|YP_004680626.1| outer membrane porin protein [Cupriavidus ne... 100 4e-19 ref|YP_556060.1| OmpC family outer membrane porin [Burkholderia ... 92 1e-16 >ref|ZP_04947083.1| Outer membrane protein (porin) [Burkholderia dolosa AUO158] gb|EAY70254.1| Outer membrane protein (porin) [Burkholderia dolosa AUO158] Length = 466 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 140/327 (42%), Positives = 184/327 (56%), Gaps = 29/327 (8%) Query: 58 SGNLQASRFGFRGAEDLGGGNSANFQLETGFSTDTGAGGGTTLFNRGASVGLSSRSYGSI 117 +GNLQA+R G EDLGGG SA F LE F+ G G+ LF R A V L+ R G++ Sbjct: 146 NGNLQANRIMLTGNEDLGGGLSAQFHLENQFNVSDGTIAGSGLFTREAWVALTGRQ-GTV 204 Query: 118 DAGLLYLPIYWVFLSSDVSTYGLANPAA-----------IMSLEHSSTL---GTSGTGGF 163 G P +WV+L D +TY L + A I + SST SG GGF Sbjct: 205 TLGRYRAPTFWVYLFEDANTYRLDSYTAPNIQHQAVLSQIFGAQRSSTTLGGAFSGLGGF 264 Query: 164 YPNALRYRTPVLFGGLTSEIGYSFGAENVGVQSEAGRNIGANVQYARDRYTLGYGYNRYR 223 N++ YRTPVLFGGLTSEI YS GA V ++ G+N+GAN+ YAR+ +GYG+N Sbjct: 265 SNNSVSYRTPVLFGGLTSEITYSTGANGVQDNTQDGKNLGANLIYARNGLKIGYGFNNSH 324 Query: 224 YYAAASPAVASSQITQVVAATYKIGSNVVGANYLHSTRSDATGWFSSAVMLNARIAVGQG 283 YY + +S T +V ATY + VGA+Y+++ SD+ F+S+ A +G G Sbjct: 325 YYIDGA---LTSLKTHIVGATYSLSFATVGADYVYA--SDSLNRFASSWTTTAVAPIGPG 379 Query: 284 DVELGAAR---RLQNGDAHAMAYDVGYVYFLSKRTQLYTYATTIRNNSRSTQGFALLNSA 340 + LG G A ++DVGYVYF+SKRTQLYT T + N++ ST G LN+A Sbjct: 380 QLNLGVGHINSSQVGGVGSATSFDVGYVYFISKRTQLYTLYTRLFNSANSTIGLGTLNAA 439 Query: 341 S------ATVSPGFSPWAITAGLRTSF 361 A V+PGF PWA T GLRT+F Sbjct: 440 PGNQTSFAKVTPGFDPWAFTIGLRTAF 466 >gb|EGD02588.1| outer membrane protein (porin) [Burkholderia sp. TJI49] Length = 355 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 105/300 (35%), Positives = 164/300 (54%), Gaps = 7/300 (2%) Query: 64 SRFGFRGAEDLGGGNSANFQLETGFSTDTGAG-GGTTLFNRGASVGLSSRSYGSIDAGLL 122 S +G RG E LGG A F LE GF +G G ++++G+ VGLS+ + G I+ G + Sbjct: 61 SYWGLRGTESLGGQTVAFFFLEQGFKLLSGKGPSNGVMWSKGSYVGLSNPALGRIELGRM 120 Query: 123 YLPIYWVFLSSDVSTYGLANPAAIMSLEHSSTLGTSGTGGFYPNALRYRTPVLFGGLTSE 182 + P YW F+ SD + + + + L++ + LG ++ N + Y TP + GL+++ Sbjct: 121 HKPNYWAFVDSDRNLDFSDSSLSAIKLQYDTVLGYDTYTDYFSNGVYYSTP-HWHGLSAD 179 Query: 183 IGYSFGAENVGVQSEAGRNIGANVQYARDRYTLGYGYNRYRYYAAASPAVASSQITQVVA 242 + Y F + G QS +GR IG ++YA + YN Y YY +A A +SS T++V+ Sbjct: 180 VAYGF-SNIAGFQSLSGRQIGGRIRYATGPFKFNVAYNDYNYYTSAKTANSSSWKTELVS 238 Query: 243 ATYKIGSNV-VGANYLHSTRSDATGWFSSAVMLNARIAVGQGDVELGAARRLQNGDAHAM 301 YK ++ +GANY+H+ R+ W +S+ +NA I VG GDV +G A Q+GD Sbjct: 239 VAYKTWHDIEIGANYIHAHRT-GDNWSASSWQVNAGIPVGPGDVNIGTAHVSQSGDRLTQ 297 Query: 302 AYDVGYVYFLSKRTQLYTYATTIRNNSRSTQGFALLNSASATVSPGFSPWAITAGLRTSF 361 +Y + Y Y LS+RT L+ A NN + A+ TV G+SPWA+ G++ F Sbjct: 298 SYSLNYAYHLSRRTTLFADAIYYHNNRNGNAAVGVF--ANDTVQAGYSPWAVGVGIKHKF 355 >ref|ZP_02906917.1| hypothetical protein BamMEX5DRAFT_2271 [Burkholderia ambifaria MEX-5] gb|EDT41938.1| hypothetical protein BamMEX5DRAFT_2271 [Burkholderia ambifaria MEX-5] Length = 147 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 72/118 (61%), Positives = 94/118 (79%) Query: 215 LGYGYNRYRYYAAASPAVASSQITQVVAATYKIGSNVVGANYLHSTRSDATGWFSSAVML 274 +GYG+NRY+YYA+ + + ASSQ+T V+AA Y G VVG NY++S R+D TGWF+SA L Sbjct: 15 VGYGFNRYQYYASTTASDASSQLTHVLAAAYDFGRVVVGGNYVYSKRTDGTGWFASAAPL 74 Query: 275 NARIAVGQGDVELGAARRLQNGDAHAMAYDVGYVYFLSKRTQLYTYATTIRNNSRSTQ 332 NAR+ VG GD+ +G +RR++NG+A A+A D GYVY+LSKRTQLY +ATTIRNN STQ Sbjct: 75 NARVRVGFGDINVGVSRRIENGNAIAIACDSGYVYYLSKRTQLYGFATTIRNNRHSTQ 132 >ref|YP_004680626.1| outer membrane porin protein [Cupriavidus necator N-1] gb|AEI79394.1| outer membrane porin protein [Cupriavidus necator N-1] Length = 350 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 100/316 (31%), Positives = 142/316 (44%), Gaps = 23/316 (7%) Query: 56 VASGNLQASRFGFRGAEDLGGGNSANFQLETGFSTDTG-AGGGTTLFNRGASVGLSSRSY 114 V G L SR+G RG E+L G S F LETG + D+G A G LF R A VGLSS+ + Sbjct: 48 VEDGGLYQSRWGLRGKEELAPGLSTVFTLETGLALDSGTAQQGGRLFGRQAWVGLSSKDW 107 Query: 115 GSIDAGLLYLPIYWVFLSSDVSTYGLANPAAIMSLEHSSTLGTSGTGGFYPNALRYRTPV 174 G++ G PIY++ S +G + + L++ G+S T N++RY +P Sbjct: 108 GALTLGRQNTPIYYI--EGQASAFGFSPYGPLGRLQNGGPAGSSLTAR-ADNSIRYESPE 164 Query: 175 LFGGLTSEIGYSFGAENVGVQSEAGRNIGANVQYARDRYTLGYGYNRYRYYAAASPAVAS 234 L GL + YSFGAE +A R + YAR LG Y R A + A Sbjct: 165 L-AGLQGSVIYSFGAERTSAPRDADRLAAGGLTYARGPLWLGLAYERTYSIGAVTDA--- 220 Query: 235 SQITQVVAATYKIGSNVVGANYLHSTRSDATGWFSSAVMLNAR-------IAVGQGDVEL 287 + + + ATY+ + AN +TR W L R I VG + L Sbjct: 221 DRDERAIGATYEFPWVKLFANVRQATR-----WVPGQATLKDRGFHVGTTIPVGGAGLVL 275 Query: 288 GAARRLQNGDA--HAMAYDVGYVYFLSKRTQLYTYATTIRNNSRSTQGFALLNSASATVS 345 A Q+ +GY Y +SKRT LY A+ I N +++ F+ + + T S Sbjct: 276 LAYGMQQSVGTPNRGQQASIGYQYSMSKRTTLYANASKIWNTNKANYTFSNIPN-EVTAS 334 Query: 346 PGFSPWAITAGLRTSF 361 P + G+R F Sbjct: 335 SVSDPRGVMMGMRHLF 350 >ref|YP_556060.1| OmpC family outer membrane porin [Burkholderia xenovorans LB400] gb|ABE36710.1| outer membrane porin, OmpC family [Burkholderia xenovorans LB400] Length = 362 Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 88/301 (29%), Positives = 139/301 (46%), Gaps = 12/301 (3%) Query: 64 SRFGFRGAEDLGGGNSANFQLETGFSTDTGA-GGGTTLFNRGASVGLSSRSYGSIDAGLL 122 S FG +G E+LGGG SA F+LE GF+ + GA T FNR + VGLSS +YGS+ G Sbjct: 71 SLFGIKGTENLGGGLSAYFKLENGFNINNGAQTSATAFFNRESYVGLSSTTYGSLQLGSQ 130 Query: 123 YLPIYWVFLSSDVSTYGLANPAAIMSLEHSSTLGTSGTGGFYPNALRYRTPVLFGGLTSE 182 + P W+ +DV + +I +L + G Y NA++Y TP F G T Sbjct: 131 FAPTVWISGKTDV--FARRGTGSIFTLLQNLGSNPRGFPSIYNNAVQYITPS-FHGFTGR 187 Query: 183 IGYSFGAENVGVQSEAGRNIGANVQYARDRYTLGYGYNRYRYYAAASPAVASSQITQVVA 242 Y+F +G + A+ YA YT R AA P + S + + Sbjct: 188 AMYAFANGGLGSSNAFSVEYNAHKLYAGAYYTRA----RIAGDAAGLPVSSVSSRSYGLG 243 Query: 243 ATYKIGSNVVGANYLHSTRSDATGWFSSAVMLNARIAVGQGDVELGAARRLQNGDAHAMA 302 A+Y+ + + + + F V ++ + +G D+ A R G A + A Sbjct: 244 ASYEFSLLTLYGHLERNMIEGTSTMFGYDVGVD--VPIGAADIRGSVAHRDVPGSAQSAA 301 Query: 303 --YDVGYVYFLSKRTQLYTYATTIRNNSRSTQGFALLNSASATVSPGFSPWAITAGLRTS 360 Y + Y Y LSKRT +YT ++N ++ G + ++ ++ G + +A+ G+R Sbjct: 302 TLYALAYFYSLSKRTTVYTQLGYLKNGLKTNFGIWPASQSAGSLPFGDAVYAVQIGIRHL 361 Query: 361 F 361 F Sbjct: 362 F 362