BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4581.p         (166 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003385020.1| multi-sensor signal transduction histidine k...   278   2e-73
ref|ZP_01885303.1| two-component hybrid sensor and regulator [Pe...   275   2e-72
ref|YP_003953490.1| sensor protein [Stigmatella aurantiaca DW4/3...   259   1e-67
ref|ZP_01462704.1| multi-sensor Hybrid Histidine Kinase [Stigmat...   246   5e-64
ref|YP_003887794.1| multi-sensor signal transduction histidine k...   169   2e-40

>ref|YP_003385020.1| multi-sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
 gb|ADB36221.1| multi-sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
          Length = 1153

 Score =  278 bits (710), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 118/144 (81%), Positives = 134/144 (93%)

Query: 1   MGKLIRAMDWSSTPLGPLDSWPQSLRTAVSLCLSSTFPILIAWGPHDIQIYNDAYRPICG 60
           MG LIR++DW+ TPLGP+ +WPQSLRT+VSLCLSSTFPILIAWGP  IQ+YND+YRPICG
Sbjct: 17  MGHLIRSLDWAKTPLGPISAWPQSLRTSVSLCLSSTFPILIAWGPETIQLYNDSYRPICG 76

Query: 61  AKHPESMGQDFRICWATALPVVGDAFDRAHQGEGTYIRDQRMFLDRYGYLEEAFMTFSFS 120
           AKHPESMGQ+FRICW TALPVVGDAF R  QGEGTYI+DQRMFLDRYGYLEEAFMTFSF+
Sbjct: 77  AKHPESMGQNFRICWETALPVVGDAFTRGQQGEGTYIKDQRMFLDRYGYLEEAFMTFSFA 136

Query: 121 PIRVESGEVGGVFHPISESTDKVL 144
           PIR ESG+VGG+FHPI+E+TDK+L
Sbjct: 137 PIRDESGDVGGIFHPITETTDKML 160


>ref|ZP_01885303.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
 gb|EDM35558.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
          Length = 1253

 Score =  275 bits (702), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 118/144 (81%), Positives = 131/144 (90%)

Query: 1   MGKLIRAMDWSSTPLGPLDSWPQSLRTAVSLCLSSTFPILIAWGPHDIQIYNDAYRPICG 60
           MG+LIR MDWS T LGP+ +WPQSLRT+VSLCLSSTFPILIAWGP  IQIYND+YRPICG
Sbjct: 37  MGQLIRTMDWSKTALGPISTWPQSLRTSVSLCLSSTFPILIAWGPEKIQIYNDSYRPICG 96

Query: 61  AKHPESMGQDFRICWATALPVVGDAFDRAHQGEGTYIRDQRMFLDRYGYLEEAFMTFSFS 120
           AKHPESMGQ+FRICW TALPVVGD F R  QGEGTYI+DQRMFLDRYGYLEEAFMTFSF+
Sbjct: 97  AKHPESMGQNFRICWETALPVVGDKFTRGEQGEGTYIKDQRMFLDRYGYLEEAFMTFSFA 156

Query: 121 PIRVESGEVGGVFHPISESTDKVL 144
           PIR ESG VGG+FHPI+E+T+K+L
Sbjct: 157 PIRDESGGVGGIFHPITETTEKML 180


>ref|YP_003953490.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gb|ADO71663.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 972

 Score =  259 bits (661), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 116/144 (80%), Positives = 130/144 (90%)

Query: 1   MGKLIRAMDWSSTPLGPLDSWPQSLRTAVSLCLSSTFPILIAWGPHDIQIYNDAYRPICG 60
           MGKLIR+MDWS TPLGP++SWPQSLRT VSLCLSSTFPILIAWGP  +QIYND+YRPICG
Sbjct: 1   MGKLIRSMDWSQTPLGPVESWPQSLRTTVSLCLSSTFPILIAWGPEHVQIYNDSYRPICG 60

Query: 61  AKHPESMGQDFRICWATALPVVGDAFDRAHQGEGTYIRDQRMFLDRYGYLEEAFMTFSFS 120
           AKHP+SMGQ FR CWA+ALP VG  FDRA QGEG+YI + RMFLDRYGYLEEAFMTFSFS
Sbjct: 61  AKHPQSMGQRFRECWASALPAVGGVFDRAQQGEGSYIENLRMFLDRYGYLEEAFMTFSFS 120

Query: 121 PIRVESGEVGGVFHPISESTDKVL 144
           PIR ESG+VGG+FHPI+E TDK++
Sbjct: 121 PIRDESGKVGGLFHPITEVTDKMI 144


>ref|ZP_01462704.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gb|EAU66544.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 965

 Score =  246 bits (629), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 110/137 (80%), Positives = 123/137 (89%)

Query: 8   MDWSSTPLGPLDSWPQSLRTAVSLCLSSTFPILIAWGPHDIQIYNDAYRPICGAKHPESM 67
           MDWS TPLGP++SWPQSLRT VSLCLSSTFPILIAWGP  +QIYND+YRPICGAKHP+SM
Sbjct: 1   MDWSQTPLGPVESWPQSLRTTVSLCLSSTFPILIAWGPEHVQIYNDSYRPICGAKHPQSM 60

Query: 68  GQDFRICWATALPVVGDAFDRAHQGEGTYIRDQRMFLDRYGYLEEAFMTFSFSPIRVESG 127
           GQ FR CWA+ALP VG  FDRA QGEG+YI + RMFLDRYGYLEEAFMTFSFSPIR ESG
Sbjct: 61  GQRFRECWASALPAVGGVFDRAQQGEGSYIENLRMFLDRYGYLEEAFMTFSFSPIRDESG 120

Query: 128 EVGGVFHPISESTDKVL 144
           +VGG+FHPI+E TDK++
Sbjct: 121 KVGGLFHPITEVTDKMI 137


>ref|YP_003887794.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
 gb|ADN14519.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
          Length = 1382

 Score =  169 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 76/154 (49%), Positives = 104/154 (67%), Gaps = 1/154 (0%)

Query: 1   MGKLIRAMDWSSTPLGPLDSWPQSLRTAVSLCLSSTFPILIAWGPHDIQIYNDAYRPICG 60
           MG LI+A DWS TPLGP++ WP  L+T VS+ L+S FPI I WGP  IQ YNDAYRPI G
Sbjct: 18  MGTLIKAFDWSLTPLGPINQWPLCLKTVVSIMLASRFPIQILWGPDYIQFYNDAYRPILG 77

Query: 61  AKHPESMGQDFRICWATALPVVGDAFDRAH-QGEGTYIRDQRMFLDRYGYLEEAFMTFSF 119
           +KHP+ +GQ  + CW+      G   DR    GE ++  DQ + L+R+GYLEE + TFS+
Sbjct: 78  SKHPKGLGQRGQDCWSEVWDFAGPRLDRVRLTGEASWSDDQLLLLNRHGYLEECYFTFSY 137

Query: 120 SPIRVESGEVGGVFHPISESTDKVLGRAPHRRLA 153
           +P+  ESGEV G+F+ ++E+T +V+     + LA
Sbjct: 138 TPVLDESGEVAGIFNAVNETTQRVIQGRRQQTLA 171