BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4577.p         (59 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002824476.1| transmembrane protein [Sinorhizobium fredii ...    80   1e-13
ref|ZP_07673972.1| integral membrane protein [Ralstonia sp. 5_7_...    71   5e-11
ref|YP_001892361.1| conserved hypothetical protein [Ralstonia pi...    71   5e-11
ref|YP_003607939.1| hypothetical protein BC1002_4450 [Burkholder...    68   4e-10
ref|YP_002547594.1| hypothetical protein Avi_5821 [Agrobacterium...    62   2e-08

>ref|YP_002824476.1| transmembrane protein [Sinorhizobium fredii NGR234]
 gb|ACP23723.1| putative transmembrane protein [Sinorhizobium fredii NGR234]
          Length = 88

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/51 (78%), Positives = 44/51 (86%)

Query: 1  MRLLLLLPFIGLLWVPFYNAELPSLFGFPFFYWYQFAWVPLTSLIIWLVYR 51
          +RLLLL P+IGLLWVPFYN E P LFGFPFFYWYQ AWVPLTSL+ + VYR
Sbjct: 32 IRLLLLAPYIGLLWVPFYNFEEPKLFGFPFFYWYQLAWVPLTSLLTYFVYR 82


>ref|ZP_07673972.1| integral membrane protein [Ralstonia sp. 5_7_47FAA]
 gb|EFP67647.1| integral membrane protein [Ralstonia sp. 5_7_47FAA]
          Length = 59

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/59 (72%), Positives = 51/59 (86%)

Query: 1  MRLLLLLPFIGLLWVPFYNAELPSLFGFPFFYWYQFAWVPLTSLIIWLVYRDGLKKGVE 59
          M+ LL LPFIGLLWVPFYN E P+LFGFPFFYWYQF WVP+TSL+IW+V+++G  KG E
Sbjct: 1  MKFLLALPFIGLLWVPFYNQETPTLFGFPFFYWYQFLWVPITSLLIWIVFKNGQSKGEE 59


>ref|YP_001892361.1| conserved hypothetical protein [Ralstonia pickettii 12J]
 ref|YP_002983862.1| hypothetical protein Rpic12D_3933 [Ralstonia pickettii 12D]
 gb|ACD28934.1| conserved hypothetical protein [Ralstonia pickettii 12J]
 gb|ACS65190.1| conserved hypothetical protein [Ralstonia pickettii 12D]
          Length = 59

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 44/59 (74%), Positives = 52/59 (88%)

Query: 1  MRLLLLLPFIGLLWVPFYNAELPSLFGFPFFYWYQFAWVPLTSLIIWLVYRDGLKKGVE 59
          M+ LL LPFIGLLWVPFYN ELPSLFGFPFFYWYQF WVP+TSL+IW+V+++G  +G E
Sbjct: 1  MKFLLALPFIGLLWVPFYNQELPSLFGFPFFYWYQFLWVPITSLLIWIVFKNGQSQGEE 59


>ref|YP_003607939.1| hypothetical protein BC1002_4450 [Burkholderia sp. CCGE1002]
 gb|ADG18428.1| hypothetical protein BC1002_4450 [Burkholderia sp. CCGE1002]
          Length = 109

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/49 (73%), Positives = 43/49 (87%)

Query: 3   LLLLLPFIGLLWVPFYNAELPSLFGFPFFYWYQFAWVPLTSLIIWLVYR 51
           L+LL+P+I LLW+PFYN   PSL GFPFFYWYQF WVPLTSL+I++VYR
Sbjct: 58  LILLIPYIALLWLPFYNDTHPSLAGFPFFYWYQFLWVPLTSLLIYIVYR 106


>ref|YP_002547594.1| hypothetical protein Avi_5821 [Agrobacterium vitis S4]
 gb|ACM38878.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 65

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/48 (75%), Positives = 42/48 (87%)

Query: 4  LLLLPFIGLLWVPFYNAELPSLFGFPFFYWYQFAWVPLTSLIIWLVYR 51
          LL++P+IGLLWVPFYN   PSLFGFPFFYWYQ  WVPLTSL+I++ YR
Sbjct: 12 LLVIPYIGLLWVPFYNIREPSLFGFPFFYWYQLMWVPLTSLLIYIAYR 59