BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4573.p (422 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777056.1| hypothetical protein Hsero_3670 [Herbaspiril... 533 e-149 ref|YP_002893642.1| hypothetical protein Tola_2462 [Tolumonas au... 377 e-102 ref|YP_004128634.1| hypothetical protein Alide_4043 [Alicycliphi... 375 e-101 ref|ZP_03540821.1| conserved hypothetical protein [Comamonas tes... 374 e-101 ref|YP_001414700.1| hypothetical protein Plav_3442 [Parvibaculum... 367 3e-99 >ref|YP_003777056.1| hypothetical protein Hsero_3670 [Herbaspirillum seropedicae SmR1] gb|ADJ65148.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 345 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 274/324 (84%), Positives = 283/324 (87%), Gaps = 6/324 (1%) Query: 99 WFQLPCAAWLRIAAIVLWSLPPAATLALVAGVPGLPGLPHSWRWGPVALVLAGIAMAGWW 158 WFQLP AW R+ A LW + A +AG PG WRW A LA +AMA WW Sbjct: 28 WFQLPGPAWGRMLASGLWCCMALSAYAALAGAPG------HWRWALPAFALATLAMAVWW 81 Query: 159 SSIRPSHARDWADDVARMLVSQVQGDTVTLDNVRNFVWRSETDVDLRWESRQYDLAQLVS 218 IRPSH R+WADDVARML QVQGD V L+NVRNF WR+ETD D+ WESRQYDLAQLVS Sbjct: 82 HGIRPSHEREWADDVARMLAPQVQGDIVRLENVRNFDWRTETDYDISWESRQYDLAQLVS 141 Query: 219 ADLLLSYWMGPAIAHTLVSFGFADGRRLVFSLEIRRERDEAFSALGGFFRKFETVIVAAD 278 ADLLLSYWMGPAIAHTLVSFGFADGRRLVFSLEIRRER EAFSALGGFFRKFETVIVAAD Sbjct: 142 ADLLLSYWMGPAIAHTLVSFGFADGRRLVFSLEIRRERGEAFSALGGFFRKFETVIVAAD 201 Query: 279 ERDIIRTRTNARGEDVYLYRLQLRHDQLRKVFLGYLERASQLRQRPRFYNTLTSNCTTIV 338 ERDIIRTRTNARGEDVYLYRLQLRHDQLRKVFLGYLERASQLRQ PRFYNTLTSNCTTIV Sbjct: 202 ERDIIRTRTNARGEDVYLYRLQLRHDQLRKVFLGYLERASQLRQHPRFYNTLTSNCTTIV 261 Query: 339 FELARRLSPSLPLDYRLLLSGYFADYVFDHGVLTPGYSFAQLRQAGRITGRALEGSAQGD 398 FELARRLSP+LPLDYRLLLSGYFADYVFDHGVLTPGYSFAQLRQAGRITGRALEGSAQGD Sbjct: 262 FELARRLSPALPLDYRLLLSGYFADYVFDHGVLTPGYSFAQLRQAGRITGRALEGSAQGD 321 Query: 399 YSRLIRQGVPGVTPLELGQDPLQP 422 YSRLIRQGVPGVTPLELGQDPLQP Sbjct: 322 YSRLIRQGVPGVTPLELGQDPLQP 345 >ref|YP_002893642.1| hypothetical protein Tola_2462 [Tolumonas auensis DSM 9187] gb|ACQ94056.1| conserved hypothetical protein [Tolumonas auensis DSM 9187] Length = 347 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 202/353 (57%), Positives = 253/353 (71%), Gaps = 13/353 (3%) Query: 64 RDKLRMLPMAVVHAAMMMVLGLLAVGLTVWGGFALWFQLPCAAWLRIAAIVLWSLPPAAT 123 R K R LP+ +V G+ + LT WG ALW Q+P A +R + LW+ AA Sbjct: 5 RQKARHLPV-------RLVTGVAVLLLTAWGALALWHQVPQPA-VRWFTLALWA---AAG 53 Query: 124 LALVAGVPGLPGLPHSWRWGPVALVLAGIAMAGWWSSIRPSHARDWADDVARMLVSQVQG 183 L++VA + GL S + V V A +A WWS+++PSH R WADDVA++L +++ G Sbjct: 54 LSMVAALTGLLS-RKSCNFTAVVFVSAVAILAAWWSTLQPSHHRLWADDVAQLLEARIDG 112 Query: 184 DTVTLDNVRNFVWRSETDVDLRWESRQYDLAQLVSADLLLSYWMGPAIAHTLVSFGFADG 243 D V L NVRNF WRSETD RWE+R YDL +L SADL+LSYWMGP IAHTLVSFGF G Sbjct: 113 DHVQLKNVRNFEWRSETDYTPRWENRTYDLTRLRSADLVLSYWMGPHIAHTLVSFGFDGG 172 Query: 244 RRLVFSLEIRRERDEAFSALGGFFRKFETVIVAADERDIIRTRTNARGEDVYLYRLQLRH 303 R+VFSLEIR+ER E+FSA+GGFFR+FE ++VAADERDI+RTR+NARGE VYLYRLQ+ Sbjct: 173 ERVVFSLEIRKERHESFSAIGGFFRQFEQILVAADERDIVRTRSNARGEAVYLYRLQMSQ 232 Query: 304 DQLRKVFLGYLERASQLRQRPRFYNTLTSNCTTIVFELARRLSPSLPLDYRLLLSGYFAD 363 +R +FL YL A++LR+ PRFYNTLTSNCTTIVFELAR ++P+LP DYRLLLSG+FA+ Sbjct: 233 ANVRALFLEYLHAANELRRTPRFYNTLTSNCTTIVFELARLIAPALPADYRLLLSGHFAE 292 Query: 364 YVFDHGVLTPGYSFAQLRQAGRITGRALEGSAQG-DYSRLIRQGVPGVTPLEL 415 Y+ D LTPG+ +A+L+ G I RAL A G D+S IRQGVPGV E+ Sbjct: 293 YIHDLHGLTPGHRYAELQALGHINERALASDASGDDFSMSIRQGVPGVPADEV 345 >ref|YP_004128634.1| hypothetical protein Alide_4043 [Alicycliphilus denitrificans BC] gb|ADV01747.1| hypothetical protein Alide_4043 [Alicycliphilus denitrificans BC] Length = 344 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 191/343 (55%), Positives = 247/343 (72%), Gaps = 5/343 (1%) Query: 74 VVHAAMMMVLGLLAVGLTVWGGFALWFQLPCAAWLRIAAIVLWSLPPAATLALVAGVPGL 133 V+ A + +G + + LTVWG ALW Q+P + +R I +WS + AG+ G Sbjct: 4 VLRALAGLAIGFVVLLLTVWGALALWHQMPGPSVVRWFVIAMWSTLGVTVVLSRAGLLG- 62 Query: 134 PGLPHSWRWGPVALVLAGIAMAGWWSSIRPSHARDWADDVARMLVSQVQGDTVTLDNVRN 193 + A V+A ++ WW +++PSH R WADDVA++L +++ G+ V L+NVRN Sbjct: 63 ---RRNRNIAGFAFVIAAASLLMWWGTLQPSHQRVWADDVAQLLEARIDGNHVHLNNVRN 119 Query: 194 FVWRSETDVDLRWESRQYDLAQLVSADLLLSYWMGPAIAHTLVSFGFADGRRLVFSLEIR 253 F WRSETD +WESR YDL +L SADL+LSYWMGP IAHTLVSFGF G R+VFSLEIR Sbjct: 120 FQWRSETDYTPQWESRTYDLDRLRSADLVLSYWMGPHIAHTLVSFGFDGGDRVVFSLEIR 179 Query: 254 RERDEAFSALGGFFRKFETVIVAADERDIIRTRTNARGEDVYLYRLQLRHDQLRKVFLGY 313 +ER E+FSA+GGFFR+FE ++VAADERDI+RTR+NARGEDVYLYRLQ+ R +FL + Sbjct: 180 KERHESFSAVGGFFRQFEQILVAADERDIVRTRSNARGEDVYLYRLQMNQASARALFLEF 239 Query: 314 LERASQLRQRPRFYNTLTSNCTTIVFELARRLSPSLPLDYRLLLSGYFADYVFDHGVLTP 373 L A++LRQ+PRFYNTLTSNCTTIVFELAR ++P+LP+DYRLLLSGYFA YV+D LTP Sbjct: 240 LNAANELRQKPRFYNTLTSNCTTIVFELARVIAPALPMDYRLLLSGYFARYVYDMHGLTP 299 Query: 374 GYSFAQLRQAGRITGRALEGS-AQGDYSRLIRQGVPGVTPLEL 415 GY + +L+ G I RAL ++ D+S IRQGVPG+ E+ Sbjct: 300 GYRYDELQALGHINERALASDVSEDDFSMSIRQGVPGIPANEV 342 >ref|ZP_03540821.1| conserved hypothetical protein [Comamonas testosteroni KF-1] gb|EED65107.1| conserved hypothetical protein [Comamonas testosteroni KF-1] Length = 344 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 191/343 (55%), Positives = 247/343 (72%), Gaps = 5/343 (1%) Query: 74 VVHAAMMMVLGLLAVGLTVWGGFALWFQLPCAAWLRIAAIVLWSLPPAATLALVAGVPGL 133 V+ A + +G + + LTVWG ALW Q+P + +R I +WS + AG+ G Sbjct: 4 VLRALAGLAIGFVVLLLTVWGALALWHQMPGPSVVRWFVIAMWSTLGVTVVLSRAGLLG- 62 Query: 134 PGLPHSWRWGPVALVLAGIAMAGWWSSIRPSHARDWADDVARMLVSQVQGDTVTLDNVRN 193 + A V+A ++ WW +++PSH R WADDVA++L +++ G+ V L+NVRN Sbjct: 63 ---RRNRNIAGFAFVIAAASLLMWWGTLQPSHQRVWADDVAQLLEARIDGNHVHLNNVRN 119 Query: 194 FVWRSETDVDLRWESRQYDLAQLVSADLLLSYWMGPAIAHTLVSFGFADGRRLVFSLEIR 253 F WRSETD +WESR YDL +L SADL+LSYWMGP IAHTLVSFGF G R+VFSLEIR Sbjct: 120 FQWRSETDYTPQWESRTYDLDRLRSADLVLSYWMGPHIAHTLVSFGFDGGDRVVFSLEIR 179 Query: 254 RERDEAFSALGGFFRKFETVIVAADERDIIRTRTNARGEDVYLYRLQLRHDQLRKVFLGY 313 +ER E+FSA+GGFFR+FE ++VAADERDI+RTR+NARGEDVYLYRLQ+ R +FL + Sbjct: 180 KERHESFSAVGGFFRQFEQILVAADERDIVRTRSNARGEDVYLYRLQMNQASARALFLEF 239 Query: 314 LERASQLRQRPRFYNTLTSNCTTIVFELARRLSPSLPLDYRLLLSGYFADYVFDHGVLTP 373 L A++LRQ+PRFYNTLTSNCTTIVFELAR ++P+LP+DYRLLLSGYFA YV+D LTP Sbjct: 240 LNAANELRQKPRFYNTLTSNCTTIVFELARVIAPALPMDYRLLLSGYFARYVYDMHGLTP 299 Query: 374 GYSFAQLRQAGRITGRALEGS-AQGDYSRLIRQGVPGVTPLEL 415 GY + +L+ G I RAL ++ D+S IRQGVPG+ E+ Sbjct: 300 GYRYDELQALGHINERALASDVSEDDFSMSIRQGVPGIPANEV 342 >ref|YP_001414700.1| hypothetical protein Plav_3442 [Parvibaculum lavamentivorans DS-1] gb|ABS65043.1| conserved hypothetical protein [Parvibaculum lavamentivorans DS-1] Length = 348 Score = 367 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 193/343 (56%), Positives = 243/343 (70%), Gaps = 5/343 (1%) Query: 74 VVHAAMMMVLGLLAVGLTVWGGFALWFQLPCAAWLRIAAIVLWSLPPAATLALVAGVPGL 133 V H M +V+G+ + LT WG ALW Q+P R A + WS A+ L++ + GL Sbjct: 8 VRHLPMRLVIGIAVLLLTAWGALALWHQMPQHPAARWIATLAWS---ASGLSVAVSLAGL 64 Query: 134 PGLPHSWRWGPVALVLAGIAMAGWWSSIRPSHARDWADDVARMLVSQVQGDTVTLDNVRN 193 + R A A+ WW +++PSH R WADDVA++L + + G V L NVRN Sbjct: 65 LE-RRTRRIAGFVFGAATAALLMWWGTLQPSHQRPWADDVAQLLEAGIDGSHVHLKNVRN 123 Query: 194 FVWRSETDVDLRWESRQYDLAQLVSADLLLSYWMGPAIAHTLVSFGFADGRRLVFSLEIR 253 F WRSETD +WE+R YDL +L SADL+LSYWMGP IAHTLVSFGF G R+VFSLEIR Sbjct: 124 FEWRSETDYTPQWENRTYDLDRLRSADLVLSYWMGPHIAHTLVSFGFDGGERVVFSLEIR 183 Query: 254 RERDEAFSALGGFFRKFETVIVAADERDIIRTRTNARGEDVYLYRLQLRHDQLRKVFLGY 313 +ER E+FSA+GGFFR+FE ++VAADERDI+RTR+NARGEDVYLYRLQ+ +R +FL Y Sbjct: 184 KERHESFSAIGGFFRQFEQILVAADERDIVRTRSNARGEDVYLYRLQMSQANVRALFLEY 243 Query: 314 LERASQLRQRPRFYNTLTSNCTTIVFELARRLSPSLPLDYRLLLSGYFADYVFDHGVLTP 373 L A++LR+ PRFYNTLTSNCTTIVFELAR ++P+LP DYRLLLSG+FA+Y+ D LTP Sbjct: 244 LHAANELRRTPRFYNTLTSNCTTIVFELARLIAPALPADYRLLLSGHFAEYIHDLHGLTP 303 Query: 374 GYSFAQLRQAGRITGRALEGSAQG-DYSRLIRQGVPGVTPLEL 415 G+ +A+L+ G I RAL A G D+S IRQGVPGV E+ Sbjct: 304 GHRYAELQALGHINERALASDASGDDFSMSIRQGVPGVPADEV 346