BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4571.p (510 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBA71749.1| putative adhesin MrkD [Arsenophonus nasoniae] 309 6e-82 ref|YP_001908772.1| adhesin MrkD (involved in the expression of ... 246 9e-63 ref|ZP_08353081.1| putative outer membrane protein [Escherichia ... 245 1e-62 ref|NP_287039.1| hypothetical protein Z1535 [Escherichia coli O1... 244 2e-62 ref|YP_003498846.1| hypothetical protein G2583_1266 [Escherichia... 244 3e-62 >emb|CBA71749.1| putative adhesin MrkD [Arsenophonus nasoniae] Length = 445 Score = 309 bits (792), Expect = 6e-82, Method: Composition-based stats. Identities = 187/430 (43%), Positives = 248/430 (57%), Gaps = 32/430 (7%) Query: 91 DGGSAQFWFGRINLASTVLQPAGTLLGSAVA--TAAEASGISGDTLLWTCDLADAGQISE 148 D SAQ FGR+NL T QP G+LL S V TA G + ++LW CD AD Q+ Sbjct: 38 DNRSAQMLFGRVNLTDTYFQPVGSLLASIVVPPTAYTFGGANASSVLWICDEADLPQLYF 97 Query: 149 VFSTNGDDRVGGFAEIGTQDGLPGFYRTWFPGVAIRLTHLRSGKVFSRYYQSARLENYDV 208 + +TNGDDRVGGF E G DGLPG Y +W V I+ T +G V R ++ L Y + Sbjct: 98 LVATNGDDRVGGFHETGLIDGLPGVYASWLAYVGIKQT--MAGVVVQRSWKRVPLTTYLL 155 Query: 209 DEASK----KILIRARHLSPVKAEIARVSDLSPGTGTSNWC---GDRPDNRFQA-AVPYR 260 E S+ KI IR + + P++ E+ RVS + P SN+C G R A Y+ Sbjct: 156 VEGSQPGKGKIHIRLQDIPPMQVELYRVSTIPPNNAASNYCAGLGTRGLGYASATGTNYQ 215 Query: 261 CLQPNGYLMLRGPGYNRASGDMDDDGEDHATRFLFFGAANGIAFGMRQAATLSVLPSCVV 320 C QPN Y+ GPG D++GED A F F+G NG +G+RQ+ TLS +CV Sbjct: 216 CTQPNAYIQFVGPGIVH-----DNEGEDSAYNFRFWGVDNGFGYGLRQSITLSNNATCVA 270 Query: 321 QNVTPEVVFPTISEEELRQGETRQVEFTLAFRCDEGVNTRPPATAGTDDNQTAFGIQVSP 380 +N TP V+FPTIS +EL G TR+ + ++ C + VN+ GT QTA GIQVSP Sbjct: 271 RNATPLVLFPTISSQELLVGGTREADISVQIECSDDVNS------GTTGGQTAIGIQVSP 324 Query: 381 GALAAARQLGYVNQDQGVRYLLSDYYGLDPSLAKGVGISLSDSDSQQPMQFLSSPLAGQG 440 GA AA+ L +N GV L+SD YG+DP+LA GVGI+L +S +QQPM F+S P G Sbjct: 325 GAYRAAQGLNLINSQGGVMALVSDNYGVDPTLATGVGITLRNSVTQQPMVFVSQP----G 380 Query: 441 MSSPLPAGRNAGWYRLDTSNASRCLPSAPAAPAYQFTVEKRLTATLQRLPGQAVAAGRVF 500 ++ P+G NAGWY + +A PS Y + TA LQ+LPGQ + G+++ Sbjct: 381 ITGIGPSGENAGWYPV-LRDAKNLGPSVSGYTHYLHS----YTAVLQQLPGQVIKPGKIY 435 Query: 501 ATAYVIVKVQ 510 ATAYV+VKVQ Sbjct: 436 ATAYVLVKVQ 445 >ref|YP_001908772.1| adhesin MrkD (involved in the expression of type III fimbriae) [Erwinia tasmaniensis Et1/99] emb|CAO97901.1| Putative adhesin MrkD (involved in the expression of type III fimbriae) [Erwinia tasmaniensis Et1/99] Length = 439 Score = 246 bits (627), Expect = 9e-63, Method: Composition-based stats. Identities = 175/455 (38%), Positives = 245/455 (53%), Gaps = 31/455 (6%) Query: 62 LLALCLLSVPAEAICKRNNRIAYPFTPLSDGGSAQFWFGRINLASTVLQPAGTLLGSAV- 120 +++L +LS +A C R + + D +A FG+INL+ LQP GTLL S V Sbjct: 10 VISLLMLSATVQATCTRTSA-----GQVGDAVTATIPFGKINLSDDYLQPPGTLLSSVVI 64 Query: 121 -ATAAEASGISGDTLLWTCDLADAGQISEVFSTNGDDRVGGFAEIGTQDGLPGFYRTWFP 179 T +G + ++L+ CD AD I + +TNGDDRVGGF +IG DGL Y TWF Sbjct: 65 PPTNYSYAGANASSVLFECDQADLSSIYFLVATNGDDRVGGFYDIGGPDGLQDVYATWFS 124 Query: 180 GVAIRLTHLRSGKVFSRYYQSARLENYDVDEASKKILIRARHLSPVKAEIARVSDLSPGT 239 ++LT +G +RY++ + Y ++ KI IR + + P++AE+ ++S L Sbjct: 125 YTGLKLT--IAGNTVTRYWKKIPISTY-ATTSNGKIQIRLQDIPPMQAELYKISSLPASA 181 Query: 240 GTSNWCGDRPDN---RFQAAVPYRCLQPNGYLMLRGPGYNRASGDMDDDGEDHATRFLFF 296 S +CG Y C QPN Y+ L G + D GED A RF F+ Sbjct: 182 AASMYCGSGNGGLGFARSTGTNYTCNQPNAYIQLSGESNVSFAFGRDKPGEDSAYRFNFW 241 Query: 297 GAANGIAFGMRQAATLSVLPSCVVQNVTPEVVFPTISEEELRQGETRQVEFTLAFRCDEG 356 A+NGI +GMR + +L SCV +NVTP V+ P IS L+ G++ +F++ C Sbjct: 242 FASNGIGYGMRASNSLFQTSSCVARNVTPVVILPGISAARLQAGDSASADFSVQIECSNA 301 Query: 357 VNTRPPATAGTDDNQTAFGIQVSPGALAAARQLGYVNQDQGVRYLLSD-YYGLDPSLAKG 415 A++G + QTA G QVS GA +AA++LG VN GV YL+SD YY D +AKG Sbjct: 302 ------ASSGINSMQTAIGFQVSNGAWSAAQRLGLVNASGGVSYLVSDNYYASD--MAKG 353 Query: 416 VGISLSDSDSQQPMQFLSSPLAGQGMSSPLPAGRNAGWYRLDTSNASRCLPSAPAAPAYQ 475 VGI+L +S M F+ AG MS P G AGWY + N S + S A Y Sbjct: 354 VGITLRNSQGTD-MNFVGQ--AGT-MSLTTPGGNAAGWYPV--LNGSSAVGS--NATGYT 405 Query: 476 FTVEKRLTATLQRLPGQAVAAGRVFATAYVIVKVQ 510 T + +TA L +LPG V G+V+ATAYV+VK+Q Sbjct: 406 -TYNQSMTARLVKLPGADVTPGKVYATAYVVVKMQ 439 >ref|ZP_08353081.1| putative outer membrane protein [Escherichia coli M718] gb|EGI22398.1| putative outer membrane protein [Escherichia coli M718] Length = 444 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 171/468 (36%), Positives = 243/468 (51%), Gaps = 43/468 (9%) Query: 56 LHLLLA-LLALCLLSVPAEAICKRNNRIAYPFTPLSDGGSAQFWFGRINLASTVLQPAGT 114 LH+L++ ++ + L+ A A C N R+ DG SA FG+INL T P G+ Sbjct: 7 LHILISSIILVALIQSSAWATCS-NTRVG----QTEDGRSALIEFGKINLTDTYFAPVGS 61 Query: 115 LLGSAV--ATAAEASGISGDTLLWTCDLADAGQISEVFSTNGDDRVGGFAEIGTQDGLPG 172 LL + V +T + G SG ++LW CD D I + +TNGDDRVGGF G DGL Sbjct: 62 LLATTVVPSTNYTSGGASGSSVLWECDATDLPNIYFLVATNGDDRVGGFHNAGGPDGLSD 121 Query: 173 FYRTWFPGVAIRLTHLRSGKVFSRYYQSARLENYDVDEASKKILIRARHLSPVKAEIARV 232 Y TWF V ++ T +G RY++ + +Y KI IR + + P+ AE+ R+ Sbjct: 122 VYATWFAFVGLKQT--MAGVTIGRYWKKVPITSYATQ--GTKIQIRLQDIPPLHAELYRI 177 Query: 233 SDLSPGTGTSNWCGDRPDN------RFQAAVPYRCLQPNGYLMLRGPGYNRASG---DMD 283 S L G +++CG+ + + PY C QPN Y+ L G SG D Sbjct: 178 STLPDTAGATSYCGNTNTDGDGVGYAKPSGTPYNCTQPNAYIQLSG-----TSGIPFAHD 232 Query: 284 DDGEDHATRFLFFGAANGIAFGMRQAATLSVLPSCVVQNVTPEVVFPTISEEELRQGETR 343 + GED A + F+G NG +GMR L +CV ++ TP V+ PTI+E +L G Sbjct: 233 EVGEDSADHYDFWGGDNGFGYGMRSVNRLYNNATCVARSATPLVLLPTIAEAQLNAGMES 292 Query: 344 QVEFTLAFRCDEGVNTRPPATAGTDDNQTAFGIQVSPGALAAARQLGYVNQDQGVRYLLS 403 F + C V + G D QTA GIQVS GA AA++LG +N + GV L+S Sbjct: 293 TANFNVRVECSNSVQS------GISDTQTALGIQVSEGAYTAAQKLGIINSNGGVSALVS 346 Query: 404 DYYGLDPSLAKGVGISLSDSDSQQPMQFLSSPLAGQ-GMSSPLPAGRNAGWYRLDTSNAS 462 D Y +AKGVGI + S+S QP ++ L GQ G++ P G AGWY + A+ Sbjct: 347 DNYDA-AEMAKGVGIYI--SNSAQPDTEMT--LVGQPGIAKLTPGGNAAGWYPV-FEGAT 400 Query: 463 RCLPSAPAAPAYQFTVEKRLTATLQRLPGQAVAAGRVFATAYVIVKVQ 510 + P Y ++ A L++LP Q V+AG+V ATAY++VK+Q Sbjct: 401 LEGATHPGYSGYSYS----FIARLKKLPNQTVSAGKVRATAYILVKMQ 444 >ref|NP_287039.1| hypothetical protein Z1535 [Escherichia coli O157:H7 str. EDL933] ref|NP_309304.1| outer membrane protein [Escherichia coli O157:H7 str. Sakai] ref|ZP_02798733.2| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196] ref|ZP_02772367.2| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113] ref|ZP_02806061.2| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076] ref|ZP_02779366.2| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401] ref|ZP_02792543.2| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486] ref|ZP_02785783.2| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501] ref|ZP_02813782.2| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869] ref|ZP_02824169.2| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508] ref|ZP_03256087.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045] ref|ZP_03262570.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042] ref|ZP_03444386.1| putative outer membrane protein [Escherichia coli O157:H7 str. TW14588] ref|YP_003077126.1| putative fimbrial-like adhesion protein [Escherichia coli O157:H7 str. TW14359] gb|AAG55650.1|AE005303_6 hypothetical protein Z1535 [Escherichia coli O157:H7 str. EDL933] dbj|BAB34700.1| putative outer membrane protein [Escherichia coli O157:H7 str. Sakai] gb|EDU34211.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196] gb|EDU56308.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113] gb|EDU70282.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076] gb|EDU76603.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401] gb|EDU81467.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486] gb|EDU87134.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501] gb|EDU89877.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869] gb|EDU96735.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508] gb|EDZ80244.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045] gb|EDZ85419.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042] gb|EEC27157.1| putative outer membrane protein [Escherichia coli O157:H7 str. TW14588] gb|ACT71050.1| predicted fimbrial-like adhesion protein [Escherichia coli O157:H7 str. TW14359] gb|EGD69321.1| Putative exported protein precursor [Escherichia coli O157:H7 str. 1044] Length = 444 Score = 244 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 167/468 (35%), Positives = 245/468 (52%), Gaps = 43/468 (9%) Query: 56 LHLLLA-LLALCLLSVPAEAICKRNNRIAYPFTPLSDGGSAQFWFGRINLASTVLQPAGT 114 LH+L++ ++ + L+ A A C N +I DG +A FG+IN+ T PAG+ Sbjct: 7 LHILISSIILVALIQSSAWANCT-NTQIG----QTEDGRTALIEFGKINMTDTYFAPAGS 61 Query: 115 LLGSAVA--TAAEASGISGDTLLWTCDLADAGQISEVFSTNGDDRVGGFAEIGTQDGLPG 172 LL + V T + G +G ++LW CD D I + +TNGDDRVGGF + G DGL Sbjct: 62 LLATTVVPPTNYTSGGATGSSVLWECDATDLPNIYFLVATNGDDRVGGFYDAGGPDGLSD 121 Query: 173 FYRTWFPGVAIRLTHLRSGKVFSRYYQSARLENYDVDEASKKILIRARHLSPVKAEIARV 232 Y TWF V ++ T +G RY++ + +Y KI IR + + P+ AE+ R+ Sbjct: 122 VYATWFAFVGLKQT--MAGVTLGRYWKKVPITSYATQ--GTKIQIRLQDIPPLHAELYRI 177 Query: 233 SDLSPGTGTSNWCGDRPDNRF------QAAVPYRCLQPNGYLMLRGPGYNRASGDM---D 283 S L + T++WCG+ + + Y C+QPN Y+ L G SG + D Sbjct: 178 STLPDTSATTSWCGNNNTDSSGVGFAKPSGTIYNCVQPNAYIQLSG-----TSGILFGHD 232 Query: 284 DDGEDHATRFLFFGAANGIAFGMRQAATLSVLPSCVVQNVTPEVVFPTISEEELRQGETR 343 + GED + + F+GA NG +GMR A L +CV ++ TP V+ PTI+E +L G Sbjct: 233 EPGEDSSVHWDFWGADNGFGYGMRSANRLYNNATCVARSATPLVLLPTIAEAQLNAGMES 292 Query: 344 QVEFTLAFRCDEGVNTRPPATAGTDDNQTAFGIQVSPGALAAARQLGYVNQDQGVRYLLS 403 F + C V + G D QTA GIQVS GA AA++LG +N + GV L+S Sbjct: 293 TGNFNVRVECSNSVQS------GISDTQTALGIQVSEGAYTAAQKLGIINSNGGVSALVS 346 Query: 404 DYYGLDPSLAKGVGISLSDS-DSQQPMQFLSSPLAGQGMSSPLPAGRNAGWYRLDTSNAS 462 D Y +AKGVGI +S+S M + P G++ P G AGWY + A+ Sbjct: 347 DNYDA-AEMAKGVGIYISNSAHPDTAMTLVGQP----GIAKLTPGGNAAGWYPV-FEGAT 400 Query: 463 RCLPSAPAAPAYQFTVEKRLTATLQRLPGQAVAAGRVFATAYVIVKVQ 510 + P +Y ++ A L++LP Q V+AG+V ATAY++VK+Q Sbjct: 401 LEGATHPGYSSYSYS----FIARLKKLPNQTVSAGKVRATAYILVKMQ 444 >ref|YP_003498846.1| hypothetical protein G2583_1266 [Escherichia coli O55:H7 str. CB9615] ref|ZP_06656958.1| adhesion protein [Escherichia coli B185] gb|ADD55862.1| hypothetical protein G2583_1266 [Escherichia coli O55:H7 str. CB9615] gb|EFF07340.1| adhesion protein [Escherichia coli B185] gb|EFX07262.1| hypothetical protein ECO5101_10157 [Escherichia coli O157:H7 str. G5101] gb|EFX12224.1| hypothetical protein ECO9389_03636 [Escherichia coli O157:H- str. 493-89] gb|EFX17136.1| hypothetical protein ECO2687_19751 [Escherichia coli O157:H- str. H 2687] gb|EFX21872.1| hypothetical protein ECO7815_16083 [Escherichia coli O55:H7 str. 3256-97 TW 07815] gb|EFX31562.1| hypothetical protein ECOSU61_02253 [Escherichia coli O157:H7 str. LSU-61] Length = 444 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 167/468 (35%), Positives = 245/468 (52%), Gaps = 43/468 (9%) Query: 56 LHLLLA-LLALCLLSVPAEAICKRNNRIAYPFTPLSDGGSAQFWFGRINLASTVLQPAGT 114 LH+L++ ++ + L+ A A C N +I DG +A FG+IN+ T PAG+ Sbjct: 7 LHILISSIILVALIQSSAWANCT-NTQIG----QTEDGRTALIEFGKINMTDTYFAPAGS 61 Query: 115 LLGSAVA--TAAEASGISGDTLLWTCDLADAGQISEVFSTNGDDRVGGFAEIGTQDGLPG 172 LL + V T + G +G ++LW CD D I + +TNGDDRVGGF + G DGL Sbjct: 62 LLATTVVPPTNYTSGGATGSSVLWECDATDLPNIYFLVATNGDDRVGGFYDAGGPDGLSD 121 Query: 173 FYRTWFPGVAIRLTHLRSGKVFSRYYQSARLENYDVDEASKKILIRARHLSPVKAEIARV 232 Y TWF V ++ T +G RY++ + +Y KI IR + + P+ AE+ R+ Sbjct: 122 VYATWFAFVGLKQT--MAGVTLGRYWKKVPITSYATQ--GTKIQIRLQDIPPLHAELYRI 177 Query: 233 SDLSPGTGTSNWCGDRPDN------RFQAAVPYRCLQPNGYLMLRGPGYNRASGDM---D 283 S L + T++WCG+ + + Y C+QPN Y+ L G SG + D Sbjct: 178 STLPDTSATTSWCGNNNTDGSGVGFAKPSGTIYNCVQPNAYIQLSG-----TSGILFGHD 232 Query: 284 DDGEDHATRFLFFGAANGIAFGMRQAATLSVLPSCVVQNVTPEVVFPTISEEELRQGETR 343 + GED + + F+GA NG +GMR A L +CV ++ TP V+ PTI+E +L G Sbjct: 233 EPGEDSSVHWDFWGADNGFGYGMRSANRLYNNATCVARSATPLVLLPTIAEAQLNAGMES 292 Query: 344 QVEFTLAFRCDEGVNTRPPATAGTDDNQTAFGIQVSPGALAAARQLGYVNQDQGVRYLLS 403 F + C V + G D QTA GIQVS GA AA++LG +N + GV L+S Sbjct: 293 TGNFNVRVECSNSVQS------GISDTQTALGIQVSEGAYTAAQKLGIINSNGGVSALVS 346 Query: 404 DYYGLDPSLAKGVGISLSDS-DSQQPMQFLSSPLAGQGMSSPLPAGRNAGWYRLDTSNAS 462 D Y +AKGVGI +S+S M + P G++ P G AGWY + A+ Sbjct: 347 DNYDA-AEMAKGVGIYISNSAHPDTAMTLVGQP----GIAKLTPGGNAAGWYPV-FEGAT 400 Query: 463 RCLPSAPAAPAYQFTVEKRLTATLQRLPGQAVAAGRVFATAYVIVKVQ 510 + P +Y ++ A L++LP Q V+AG+V ATAY++VK+Q Sbjct: 401 LEGATHPGYSSYSYS----FIARLKKLPNQTVSAGKVRATAYILVKMQ 444