BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4570.p (262 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_965267.1| fimbrial protein [Shewanella sp. W3-18-1] >gi|1... 145 6e-33 ref|YP_774723.1| fimbrial protein [Burkholderia ambifaria AMMD] ... 139 3e-31 ref|ZP_08368997.1| fimbrial protein [Escherichia coli TA271] >gi... 124 2e-26 ref|YP_003034072.1| hypothetical protein pVir_97 [Escherichia co... 123 2e-26 ref|ZP_04633265.1| hypothetical protein yfred0001_9220 [Yersinia... 122 4e-26 >ref|YP_965267.1| fimbrial protein [Shewanella sp. W3-18-1] gb|ABM26713.1| Fimbrial protein [Shewanella sp. W3-18-1] Length = 176 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 91/158 (57%), Positives = 115/158 (72%), Gaps = 3/158 (1%) Query: 106 AGSTINFRGQVNSQTCQVMVDG-AANPVVLLPTVATGDLAATGASAGETPFVVSVSGCTA 164 A +TI F G+V+ QTC+V ++G AANP VLLPTV+T LA G+ AGETPF +SVSGCT Sbjct: 21 ANNTITFLGEVSDQTCEVAINGNAANPSVLLPTVSTAQLATAGSVAGETPFTISVSGCTV 80 Query: 165 SATDKLKIKTQFLASAATSGNNIPNLGSAKNVALQLRKSVGGDPISLVGGSGVSVEGLEI 224 +AT L IKT FL + T+ N+ N G+A NVALQL SVGG I+L GS +V+GL + Sbjct: 81 NATQALPIKTVFLGNNVTTAGNLGNTGTATNVALQLLDSVGGTEINLTVGS--AVDGLNV 138 Query: 225 AAGSTSASHTFAVRYVAEGGAAEAGSVIGSVQYALDYF 262 AAG+ SASH FAV+Y++E G+A AG VI SVQYA+ Y Sbjct: 139 AAGADSASHDFAVQYISETGSATAGRVISSVQYAVSYL 176 >ref|YP_774723.1| fimbrial protein [Burkholderia ambifaria AMMD] gb|ABI88389.1| Fimbrial protein [Burkholderia ambifaria AMMD] Length = 202 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 89/178 (50%), Positives = 116/178 (65%), Gaps = 4/178 (2%) Query: 88 MKKHLAILLLVSPSVVLAAGS--TINFRGQVNSQTCQVMVDG-AANPVVLLPTVATGDLA 144 MKK+L +L+L + V A S TI F+G+V QTC V V+G A++P VLLPTV+T DLA Sbjct: 24 MKKNLLVLMLAAAPVFAFAQSSNTIQFQGEVTDQTCAVTVNGNASSPTVLLPTVSTADLA 83 Query: 145 ATGASAGETPFVVSVSGCTASATDKLKIKTQFLASAATSGNNIPNLGSAKNVALQLRKSV 204 G +AGET F + +SGCTA I T F+ + T+ N+ N G+A NVALQL Sbjct: 84 TAGGTAGETHFTLGLSGCTAPTQTARAINTVFVGNQVTTNGNLGNTGTATNVALQLLDPA 143 Query: 205 GG-DPISLVGGSGVSVEGLEIAAGSTSASHTFAVRYVAEGGAAEAGSVIGSVQYALDY 261 P +L G SG + GL +A G TSAS+ FAVRY+ E G+A AGSV+GSVQYA++Y Sbjct: 144 NATTPFNLSGASGYAAPGLSLAVGDTSASYDFAVRYITENGSATAGSVLGSVQYAINY 201 >ref|ZP_08368997.1| fimbrial protein [Escherichia coli TA271] gb|EGI36566.1| fimbrial protein [Escherichia coli TA271] Length = 177 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 82/155 (52%), Positives = 100/155 (64%), Gaps = 2/155 (1%) Query: 108 STINFRGQVNSQTCQVMVDGAA-NPVVLLPTVATGDLAATGASAGETPFVVSVSGCTASA 166 +TI F+G+VN+QTC V V+GA+ +PVVLLPTV+T LA A AG T F V++SGC A Sbjct: 23 NTIRFQGEVNAQTCHVDVNGASGSPVVLLPTVSTNQLANASARAGATSFTVNISGCQAPT 82 Query: 167 TDKLKIKTQFLASAATSGNNIPNLGSAKNVALQLRKSVGGDPISLVGGSGVSVEGLEIAA 226 I + T N+ N GSAKNV LQL SVGG I L GS SVEG+ + Sbjct: 83 AGDQIINLVLAGNNVTPSGNLGNTGSAKNVELQLLDSVGGKKIDLSSGSA-SVEGMLLTR 141 Query: 227 GSTSASHTFAVRYVAEGGAAEAGSVIGSVQYALDY 261 GSTSAS FAV+Y G+ EAGSV+GSVQYA+ Y Sbjct: 142 GSTSASRNFAVQYYTPTGSVEAGSVLGSVQYAISY 176 >ref|YP_003034072.1| hypothetical protein pVir_97 [Escherichia coli Vir68] gb|ACT33556.1| hypothetical protein pVir_97 [Escherichia coli Vir68] Length = 174 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 82/155 (52%), Positives = 100/155 (64%), Gaps = 2/155 (1%) Query: 108 STINFRGQVNSQTCQVMVDGAA-NPVVLLPTVATGDLAATGASAGETPFVVSVSGCTASA 166 +TI F+G+VN+QTC V V+GA+ +PVVLLPTV+T LA A AG T F V++SGC A Sbjct: 20 NTIRFQGEVNAQTCHVDVNGASGSPVVLLPTVSTNQLANASARAGATSFTVNISGCQAPT 79 Query: 167 TDKLKIKTQFLASAATSGNNIPNLGSAKNVALQLRKSVGGDPISLVGGSGVSVEGLEIAA 226 I + T N+ N GSAKNV LQL SVGG I L GS SVEG+ + Sbjct: 80 AGDQIINLVLAGNNVTPSGNLGNTGSAKNVELQLLDSVGGKKIDLSSGSA-SVEGMLLTR 138 Query: 227 GSTSASHTFAVRYVAEGGAAEAGSVIGSVQYALDY 261 GSTSAS FAV+Y G+ EAGSV+GSVQYA+ Y Sbjct: 139 GSTSASRNFAVQYYTPTGSVEAGSVLGSVQYAISY 173 >ref|ZP_04633265.1| hypothetical protein yfred0001_9220 [Yersinia frederiksenii ATCC 33641] gb|EEQ14085.1| hypothetical protein yfred0001_9220 [Yersinia frederiksenii ATCC 33641] Length = 176 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 86/176 (48%), Positives = 116/176 (65%), Gaps = 6/176 (3%) Query: 89 KKHLAILLLVSPSVVLAAGS--TINFRGQVNSQTCQVMVDGAAN-PVVLLPTVATGDLAA 145 K +A++LL P VVLAA S TI F+G+V QTC V ++G AN PVVLLPTV+T +L Sbjct: 3 KTLIALVLLALPGVVLAATSNNTIKFQGEVAEQTCMVDINGTANTPVVLLPTVSTSNLNQ 62 Query: 146 TGASAGETPFVVSVSGCTASATDKLKIKTQFLASAATSGNNIPNLGSAKNVALQLRKSVG 205 + AG+T F ++++GC + D KI + F TS N+ N+G+A+NVA+QL + Sbjct: 63 VNSVAGKTNFTINLTGCNIAIQDT-KISSVFQGMNVTSAGNLGNVGTAQNVAIQLLDT-N 120 Query: 206 GDPISLVGGSGVSVEGLEIAAGSTSASHTFAVRYVAEGGAAEAGSVIGSVQYALDY 261 G PI + GGS VSV G+ +AAG+TSAS A +Y+ E G A AGSVI S QYA+ Y Sbjct: 121 GAPIRMSGGS-VSVPGITLAAGATSASQDLAAQYITEEGRATAGSVIASAQYAITY 175