BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4567.p (219 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003609631.1| LuxR family transcriptional regulator [Burkh... 211 6e-53 ref|YP_003375799.1| LuxR family transcriptional regulator [Xanth... 206 1e-51 ref|NP_523180.1| capsular synthesis response regulator transcrip... 204 1e-50 ref|ZP_04947578.1| Response regulator [Burkholderia dolosa AUO15... 203 1e-50 emb|CAQ18301.1| capsular synthesis response regulator protein [R... 203 2e-50 >ref|YP_003609631.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002] gb|ADG20120.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002] Length = 216 Score = 211 bits (537), Expect = 6e-53, Method: Composition-based stats. Identities = 109/208 (52%), Positives = 142/208 (68%) Query: 8 IRVGIADDYPVVLRGIEAILATCADLALAFSAESIAQLMSCLERDPVDVLLCDYAFDDDP 67 IRV IADD+P +L G+E +L C D+ + F +E+I QL+ L PVDVL+CDY F+ DP Sbjct: 4 IRVAIADDHPFILLGVEQLLQRCPDMRVCFKSETIGQLLQLLVEVPVDVLVCDYEFEGDP 63 Query: 68 QADGLDLLKRLRRQHPAMKVIFLSAHAQPQIISSALELGAAGFIGKNRSDFVNLPQAVCS 127 ADGL+LL R+RR PA++V+FLS H+ IIS+AL GAAGF+GK FV+L A+ + Sbjct: 64 YADGLNLLDRIRRVAPAIRVVFLSTHSSTHIISAALNAGAAGFVGKGPEGFVSLTAAIRA 123 Query: 128 VHHGQVYLPQSLSSALLGSLFNVNARQTGLAQLSERELVVARMICQGMSISDIAERLNRS 187 + V+LP S++S +L + + L LS+ E V RMIC GMSI+ IAERLNRS Sbjct: 124 AKNKSVFLPDSIASKMLRAKTRAAEGGSSLHLLSKNESTVVRMICDGMSIATIAERLNRS 183 Query: 188 PKTISNQKVAAMKKLGVSNDVELSRIFQ 215 PKT+SNQK A MKKLG NDVEL I + Sbjct: 184 PKTVSNQKNAGMKKLGARNDVELVTIVR 211 >ref|YP_003375799.1| LuxR family transcriptional regulator [Xanthomonas albilineans GPE PC73] emb|CBA15811.1| probable two-component system regulatory protein, luxr family [Xanthomonas albilineans] Length = 217 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 118/210 (56%), Positives = 155/210 (73%), Gaps = 1/210 (0%) Query: 8 IRVGIADDYPVVLRGIEAILATCADLALAFSAESIAQLMSCLERDPVDVLLCDYAFDDDP 67 IRVGIADD+P+VL G+ ++L D+ + FS ++I QL+ L PVDVLLCDY F+ DP Sbjct: 4 IRVGIADDHPIVLLGVTSVLKDNLDIEVVFSCDAIDQLLRSLAEQPVDVLLCDYEFESDP 63 Query: 68 QADGLDLLKRLRRQHPAMKVIFLSAHAQPQIISSALELGAAGFIGKNRSDFVNLPQAVCS 127 QADGL LL+RLRR P M+++ LSAH P I+S+AL+LGA+GFIGK+R+DF NL AV Sbjct: 64 QADGLHLLQRLRRLAPQMRLLVLSAHTAPSIVSAALQLGASGFIGKSRADFGNLVAAVRD 123 Query: 128 VHHGQVYLPQSLSSALLGSLFNVNARQTGLAQLSERELVVARMICQGMSISDIAERLNRS 187 V G++Y+P SLS+ALL + ++ + TG+ LS +E VARM G+S+ +IA RL RS Sbjct: 124 VASGRLYVPSSLSAALLTTRYS-RSSATGVNTLSAKEATVARMTADGLSLGEIAARLKRS 182 Query: 188 PKTISNQKVAAMKKLGVSNDVELSRIFQNL 217 PKTISNQK+AAMKKLG NDVEL+ I + L Sbjct: 183 PKTISNQKIAAMKKLGAKNDVELATILREL 212 >ref|NP_523180.1| capsular synthesis response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] emb|CAD18772.1| probable capsular synthesis response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 219 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 115/210 (54%), Positives = 153/210 (72%), Gaps = 1/210 (0%) Query: 8 IRVGIADDYPVVLRGIEAILATCADLALAFSAESIAQLMSCLERDPVDVLLCDYAFDDDP 67 I+VGIADD+P+VL G ++L D+ + F+ E+I QL+ L PVDVLLCDY F+ DP Sbjct: 4 IKVGIADDHPIVLLGATSMLKDHPDIEVLFTCETIEQLLKQLAEHPVDVLLCDYEFESDP 63 Query: 68 QADGLDLLKRLRRQHPAMKVIFLSAHAQPQIISSALELGAAGFIGKNRSDFVNLPQAVCS 127 QADGL LL+RLRR P +++ LSAH+ P I+S+ L LGA+GFIGK+R+DF NL AV Sbjct: 64 QADGLHLLQRLRRLVPDTRILLLSAHSTPSIVSATLGLGASGFIGKSRADFGNLAAAVRK 123 Query: 128 VHHGQVYLPQSLSSALLGSLFNVNARQTGLAQLSERELVVARMICQGMSISDIAERLNRS 187 V G +Y+P SLS+ALL + + + G+ LS RE++VA+M G++I +IA+RL RS Sbjct: 124 VAGGSLYVPGSLSAALLSARYGKHG-MVGVEALSTREVIVAQMTADGLTIGEIADRLKRS 182 Query: 188 PKTISNQKVAAMKKLGVSNDVELSRIFQNL 217 PKTISNQKVAAMKKLGV NDVEL+ + + L Sbjct: 183 PKTISNQKVAAMKKLGVKNDVELAAVLREL 212 >ref|ZP_04947578.1| Response regulator [Burkholderia dolosa AUO158] gb|EAY70749.1| Response regulator [Burkholderia dolosa AUO158] Length = 221 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 110/212 (51%), Positives = 157/212 (74%), Gaps = 1/212 (0%) Query: 8 IRVGIADDYPVVLRGIEAILATCADLALAFSAESIAQLMSCLERDPVDVLLCDYAFDDDP 67 IRV +ADD+P+VL GI+ IL D+ ++F A++I L+ + +P+DVL+CDY F+DD Sbjct: 8 IRVAVADDHPIVLVGIKGILMDAPDIEVSFLADNIKTLLEKVREEPIDVLVCDYEFEDDK 67 Query: 68 QADGLDLLKRLRRQHPAMKVIFLSAHAQPQIISSALELGAAGFIGKNRSDFVNLPQAVCS 127 +ADGL+LL+RL + P +V+FLS+H+ I+S+AL GAAGFIGK+++DF L A+ Sbjct: 68 EADGLNLLRRLIQLVPDTRVLFLSSHSATHIVSAALAGGAAGFIGKSKADFAVLADAIRR 127 Query: 128 VHHGQVYLPQSLSSALLGSLFNVNARQ-TGLAQLSERELVVARMICQGMSISDIAERLNR 186 VH G+ Y+P S+++ +L ++F+ RQ TG+ LS REL V R+IC G SI++IAER+ R Sbjct: 128 VHGGETYIPPSIATEILANVFSSRTRQTTGVDTLSPRELEVVRLICAGHSIAEIAERVCR 187 Query: 187 SPKTISNQKVAAMKKLGVSNDVELSRIFQNLG 218 SPKTISNQK AAM+KL V NDVEL+R ++LG Sbjct: 188 SPKTISNQKNAAMRKLAVRNDVELARAARDLG 219 >emb|CAQ18301.1| capsular synthesis response regulator protein [Ralstonia solanacearum MolK2] Length = 219 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 116/210 (55%), Positives = 152/210 (72%), Gaps = 1/210 (0%) Query: 8 IRVGIADDYPVVLRGIEAILATCADLALAFSAESIAQLMSCLERDPVDVLLCDYAFDDDP 67 I+VGIADD+P+VL G ++L D+ + F+ E+I QL+ L PVDVLLCDY F+ DP Sbjct: 4 IKVGIADDHPIVLLGATSMLKDHPDIEVVFTCETIEQLLKQLAEHPVDVLLCDYEFESDP 63 Query: 68 QADGLDLLKRLRRQHPAMKVIFLSAHAQPQIISSALELGAAGFIGKNRSDFVNLPQAVCS 127 QADGL LL+RLRR P +++ LSAH+ P I+S+ L LGA+GFIGK+R+DF NL AV Sbjct: 64 QADGLHLLQRLRRLVPDTRILLLSAHSTPSIVSATLGLGASGFIGKSRTDFGNLSAAVRK 123 Query: 128 VHHGQVYLPQSLSSALLGSLFNVNARQTGLAQLSERELVVARMICQGMSISDIAERLNRS 187 V G +Y+P SLS+ALL + + + G+ LS RE+VVA+M G++I +IA RL RS Sbjct: 124 VAGGSLYVPGSLSAALLSARYG-KSGIVGMEALSTREVVVAQMTADGLTIGEIAARLKRS 182 Query: 188 PKTISNQKVAAMKKLGVSNDVELSRIFQNL 217 PKTISNQKVAAMKKLGV NDVEL+ + + L Sbjct: 183 PKTISNQKVAAMKKLGVKNDVELAAVLREL 212