BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4565.p (367 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777383.1| porin transmembrane protein [Herbaspirillum ... 467 e-129 ref|YP_001859402.1| outer membrane protein (porin) [Burkholderia... 298 1e-78 ref|ZP_03542383.1| porin Gram-negative type [Comamonas testoster... 285 6e-75 ref|YP_001807783.1| outer membrane protein (porin) [Burkholderia... 285 1e-74 emb|CAQ37219.1| outer membrane protein p2 [Ralstonia solanacearu... 284 2e-74 >ref|YP_003777383.1| porin transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65475.1| porin transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 365 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 264/342 (77%), Positives = 300/342 (87%), Gaps = 1/342 (0%) Query: 27 QSQVSVYGIIDTGVVYTNHANAAGNSVLKMPSLTSSFPSRLGFKGTEDLGGGLQAMFVLE 86 QS V++YGIIDTGVVYT +ANA GNSV KMPSLT SFPSR+GFKGTEDLGGGLQAMFVLE Sbjct: 24 QSSVTIYGIIDTGVVYTTNANANGNSVFKMPSLTGSFPSRIGFKGTEDLGGGLQAMFVLE 83 Query: 87 SGFSVDTGAMGQGNRLFGRQSYVGLKDTWGSLMLGRQVNMTYLVTAKSDVMGPNLFSISS 146 SGF+ DTGAMGQG RLFGRQSYVGLK++WG LMLGRQVNMTYL K+DVMGPNLF+I S Sbjct: 84 SGFAPDTGAMGQGGRLFGRQSYVGLKNSWGQLMLGRQVNMTYLSQLKTDVMGPNLFAIGS 143 Query: 147 IDAYIPNARSDNAIGYLGSFSGVTLGATYSFGRDTSTAGGASATGCPGEVAGNAKACRQV 206 IDAY+PNARSDNAIGYLG+FSG T+GATYSFGRD + G +AT CPGEVAGN+KACRQV Sbjct: 144 IDAYLPNARSDNAIGYLGNFSGFTVGATYSFGRDAAGPAGPAATNCPGEVAGNSKACRQV 203 Query: 207 TAMLAYDSSRFGVSGSYDILYGNAGAANGLTSSDNHDQRVTLNGYVMLGNSKIGGGVIDR 266 TA+L YD +GV+ SYDILYGN GA+NG+TSSDN DQRVTLNGY MLG+ KIGGGV+DR Sbjct: 204 TALLGYDGKGWGVTSSYDILYGNTGASNGMTSSDNTDQRVTLNGYFMLGDVKIGGGVVDR 263 Query: 267 KTR-AATANTDSDLYYLGLSTPLSAALVLDAQVARLNIKGSANTSTLSVARLAYNLSKRT 325 +TR AA NTDSDLYYLG+S PLS ALVLDAQV+RL++K S N TLSVARL YNLSKRT Sbjct: 264 RTRAAANTNTDSDLYYLGVSYPLSVALVLDAQVSRLDVKNSPNDVTLSVARLTYNLSKRT 323 Query: 326 ALHGSLGYMKNAGTAAIPLDVGGSVGAGMNQLGLMTGVRHTF 367 A++GSLGY+KN GT+++ LD GG+VGAG NQLG+MTG+RHTF Sbjct: 324 AVYGSLGYIKNGGTSSVALDAGGTVGAGKNQLGVMTGIRHTF 365 >ref|YP_001859402.1| outer membrane protein (porin) [Burkholderia phymatum STM815] gb|ACC72356.1| outer membrane protein (porin) [Burkholderia phymatum STM815] Length = 361 Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 170/342 (49%), Positives = 238/342 (69%), Gaps = 2/342 (0%) Query: 26 AQSQVSVYGIIDTGVVYTNHANAAGNSVLKMPSLTSSFPSRLGFKGTEDLGGGLQAMFVL 85 AQS V++YGI+DTGV Y N+A A+G SV+ MPSL+ PSR G +G EDLGGG +A FVL Sbjct: 22 AQSNVTLYGIVDTGVQYYNNATASGGSVVGMPSLSGKLPSRFGLRGVEDLGGGYKAFFVL 81 Query: 86 ESGFSVDTGAMGQGNRLFGRQSYVGLKDTWGSLMLGRQVNMTYLVTAKSDVMGPNLFSIS 145 E+GF+V+ GA+G G R+FGR + VG+ +G+L LGRQ+NMT +DV+GP+ S++ Sbjct: 82 ENGFAVNNGALGYGGRIFGRAANVGIDSRFGTLTLGRQMNMTLYALTDADVIGPSNHSLA 141 Query: 146 SIDAYIPNARSDNAIGYLGSFSGVTLGATYSFGRDTSTAGGASATGCPGEVAGNAKACRQ 205 D Y+PNARSDNA+GY+G + G T+GATYSFGRD + G SAT C G+V G+ ACRQ Sbjct: 142 VFDTYLPNARSDNAVGYMGKWHGFTIGATYSFGRDAAGPAGPSATNCAGQVPGDFVACRQ 201 Query: 206 VTAMLAYDSSRFGVSGSYDILYGNAGAANGLTSSDNHDQRVTLNGYVMLGNSKIGGGVID 265 T MLAY S GV+ SYD++ G GA+ L+SS N D R ++GY GN K+G G I Sbjct: 202 YTVMLAYASETLGVTASYDVMRGGTGASAPLSSSANTDTRTIVDGYAKYGNLKLGAGWIR 261 Query: 266 RKTRAATANTDSDLYYLGLSTPLSAALVLDAQVARLNIKGSANTSTLSVARLAYNLSKRT 325 R T ++T ++ SD+++ G + L+ A +DAQ R ++ ++ +TL V R++Y LSKRT Sbjct: 262 RNT-SSTTHSQSDIFFAGGTYLLTPAFAVDAQAVRYILRTRSD-ATLFVGRVSYFLSKRT 319 Query: 326 ALHGSLGYMKNAGTAAIPLDVGGSVGAGMNQLGLMTGVRHTF 367 +++ S GYM N+ T+A+P+ GG+VG G NQ+G M G++ F Sbjct: 320 SIYSSAGYMINSPTSAVPVSAGGTVGIGKNQVGFMVGMQQRF 361 >ref|ZP_03542383.1| porin Gram-negative type [Comamonas testosteroni KF-1] gb|EED66669.1| porin Gram-negative type [Comamonas testosteroni KF-1] Length = 363 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 169/345 (48%), Positives = 228/345 (66%), Gaps = 4/345 (1%) Query: 26 AQSQVSVYGIIDTGVVYTNHANAAGNSVLKMPSLTSSFPSRLGFKGTEDLGGGLQAMFVL 85 AQ+ V++YG++D GV + ++ G S+ +MP L S PSRLGF+GTEDLGGGL+A+F L Sbjct: 20 AQTNVTIYGVLDAGVEHLSNVGGNG-SLTRMPGLGVSVPSRLGFRGTEDLGGGLKAIFTL 78 Query: 86 ESGFSVDTGAMGQGNRLFGRQSYVGLKDTWGSLMLGRQVNMTYLVTAKSDVMGPNLFSIS 145 ESGF D+G + QG R FGRQ++VGL WGSL LGRQ +M + +D++GPN + Sbjct: 79 ESGFGTDSGTLNQGGRFFGRQAFVGLSGDWGSLTLGRQYSMLFWSQIDADILGPNAYGAG 138 Query: 146 SIDAYIPNARSDNAIGYLGSFSGVTLGATYSFGRDTSTAGGASATGCPGEVAGNAKACRQ 205 S+D+Y+PNAR DN+I Y G+F+G+T+GATYSFGRDT A S T C GE A + ACRQ Sbjct: 139 SLDSYLPNARVDNSIAYRGTFNGLTVGATYSFGRDTVNANSPSGTNCAGESATDKSACRQ 198 Query: 206 VTAMLAYDSSRFGVSGSYDILYGNAGAANGLTSSDNHDQRVTLNGYVMLGNSKIGGGVID 265 +AM+ YD+ +G S + D + G AGA GL SSD D+R T+ G+ K+GGGVI Sbjct: 199 WSAMVKYDAPTWGASAAVDEIRGGAGAFAGLNSSDKKDRRTTVAGWAKFAALKVGGGVIA 258 Query: 266 RKTRAATANTDSDLYYLGLSTPLSAALVLDAQVARLNIKGSANTSTLSVARLAYNLSKRT 325 R A A S+L+YLG S P++ ALVLD QV +L+ K S N + L R Y+LSKRT Sbjct: 259 RSNDATPATRRSNLWYLGASYPITQALVLDGQVFKLDYKHSDNQALLYAVRGTYHLSKRT 318 Query: 326 ALHGSLGYMKNAGTAAIPLD---VGGSVGAGMNQLGLMTGVRHTF 367 AL + G++ N GT A+ + GG AG +Q G+ G+RH+F Sbjct: 319 ALFATAGHIANDGTLALSVSGAAAGGGTTAGGSQTGVAVGIRHSF 363 >ref|YP_001807783.1| outer membrane protein (porin) [Burkholderia ambifaria MC40-6] gb|ACB63567.1| outer membrane protein (porin) [Burkholderia ambifaria MC40-6] Length = 362 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 169/341 (49%), Positives = 233/341 (68%), Gaps = 3/341 (0%) Query: 27 QSQVSVYGIIDTGVVYTNHANAAGNSVLKMPSLTSSFPSRLGFKGTEDLGGGLQAMFVLE 86 QS V++YGI+DTG+ Y N+A G MPSLT PSR G +G EDLGGG +A FVLE Sbjct: 25 QSSVTLYGIVDTGIQYYNNAAGGGAVA-GMPSLTGEVPSRFGLRGVEDLGGGYRAFFVLE 83 Query: 87 SGFSVDTGAMGQGNRLFGRQSYVGLKDTWGSLMLGRQVNMTYLVTAKSDVMGPNLFSISS 146 +GF+ ++GA+ G RLFGRQ+ VG++ +G+L LGRQ+NM+ V +DV+GP++ S++S Sbjct: 84 NGFAPNSGALNYGGRLFGRQANVGIESPYGALTLGRQMNMSMRVLLNADVIGPSIHSMAS 143 Query: 147 IDAYIPNARSDNAIGYLGSFSGVTLGATYSFGRDTSTAGGASATGCPGEVAGNAKACRQV 206 D+Y+PNARSDNA+GYLG F GVTLG TYS GRD + G SAT C G VAG+ ACRQ Sbjct: 144 FDSYLPNARSDNALGYLGRFGGVTLGGTYSTGRDDAGPAGPSATHCAGNVAGDPVACRQY 203 Query: 207 TAMLAYDSSRFGVSGSYDILYGNAGAANGLTSSDNHDQRVTLNGYVMLGNSKIGGGVIDR 266 T M+AYD+ +FG + SYD+++G AGA+ L+S D R ++ YV G +K+G G I R Sbjct: 204 TMMVAYDAPQFGAAASYDVMHGGAGASAPLSSPGYTDTRTIVDAYVKFGIAKLGAGWIRR 263 Query: 267 KTRAATANTDSDLYYLGLSTPLSAALVLDAQVARLNIKGSANTSTLSVARLAYNLSKRTA 326 T AA A++ SD+++ G + + AL DAQ R ++G + S L VAR Y+LSKRT Sbjct: 264 NT-AAAAHSQSDIFFAGGTVQATPALSFDAQALRYLLRGRFD-SNLFVARANYSLSKRTM 321 Query: 327 LHGSLGYMKNAGTAAIPLDVGGSVGAGMNQLGLMTGVRHTF 367 ++ S+GYM N+ + GG+VGAG NQ+G+M G++ F Sbjct: 322 VYTSVGYMTNSALGTSAVAAGGTVGAGQNQVGVMAGIQQRF 362 >emb|CAQ37219.1| outer membrane protein p2 [Ralstonia solanacearum MolK2] Length = 364 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 167/343 (48%), Positives = 234/343 (68%), Gaps = 6/343 (1%) Query: 30 VSVYGIIDTGVVYTNHANAAGNSVLKMPSLTSSFPSRLGFKGTEDLGGGLQAMFVLESGF 89 V++YG++DTGV Y NH AG+SV++MP+L+ + PSR G +GTEDLGGG + +F LESGF Sbjct: 23 VTLYGVVDTGVEYVNHIGTAGSSVVRMPNLSGTVPSRWGLRGTEDLGGGTKTLFALESGF 82 Query: 90 SVDTGAMGQGNRLFGRQSYVGL-KDTWGSLMLGRQVNMTYLVTAKSDVMGPNLFSISSID 148 + DTGA QG RLFGRQ++VGL D WG + GRQ M + T +D++GPN + SS+D Sbjct: 83 ATDTGASNQGGRLFGRQAWVGLSNDNWGQISFGRQYTMLFWATLDTDLLGPNAYGSSSLD 142 Query: 149 AYIPNARSDNAIGYLGSFSGVTLGATYSFGRDTSTAGGA-SATGCPGEVAGNAKACRQVT 207 +Y+PNAR+DNAI Y G F G+T+GATYSFGRDT AG + S T C GE ++ ACR+ + Sbjct: 143 SYLPNARADNAIAYKGKFGGLTVGATYSFGRDTVNAGPSPSGTNCAGENPADSLACREWS 202 Query: 208 AMLAYDSSRFGVSGSYDILYGNAGAANGLTSSDNHDQRVTLNGYVMLGNSKIGGGVIDRK 267 AML Y++ R+GVS +YD L G GA GLTSS D R+ L GY ++G++K+G G I R+ Sbjct: 203 AMLMYETGRWGVSAAYDSLRGGPGAFAGLTSSSLKDDRLALGGYALVGSAKVGLGWIARR 262 Query: 268 TRAATANTDSDLYYLGLSTPLSAALVLDAQVARLNIKGSANTSTLSVARLAYNLSKRTAL 327 A TA + S+L+Y G++ L+ AL L + L + SA+ + L R +Y LSKR+++ Sbjct: 263 NEALTA-SRSNLFYAGVAYDLTPALTLTGEAFYLKYRNSADKAWLGAVRASYALSKRSSV 321 Query: 328 HGSLGYMKNAGTAAIPLD---VGGSVGAGMNQLGLMTGVRHTF 367 + ++GY++N G A+ + G S AG +QLG M GV+H F Sbjct: 322 YATVGYLENGGNLALSVSSAATGASPAAGGSQLGAMVGVKHVF 364