BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4564.p (338 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777054.1| AraC family transcription regulator protein ... 567 e-160 ref|YP_001811188.1| AraC family transcriptional regulator [Burkh... 296 4e-78 ref|ZP_02891872.1| transcriptional regulator, AraC family [Burkh... 295 1e-77 ref|YP_932622.1| AraC family transcriptional regulator [Azoarcus... 285 9e-75 gb|AAL86584.1| hypothetical protein [Delftia acidovorans] 275 7e-72 >ref|YP_003777054.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65146.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 340 Score = 567 bits (1461), Expect = e-160, Method: Composition-based stats. Identities = 308/340 (90%), Positives = 320/340 (94%), Gaps = 2/340 (0%) Query: 1 MLNTVHALSLEPLYRRRVFHSTRKVDCHAQVANELAEHDLFWKGDDVDTVLFKAAIQQLQ 60 MLNTVHALSLEPLYRRRVF S+RKVDCHAQVANEL+EHDLFWKGDDVDTVLFKAAIQQLQ Sbjct: 1 MLNTVHALSLEPLYRRRVFQSSRKVDCHAQVANELSEHDLFWKGDDVDTVLFKAAIQQLQ 60 Query: 61 IFMLKYGAEVVVRPRLFNGFALVHMTLSGSAEIESDGRKVCIPQGHTALIAPKKNLRLWW 120 IFMLKYGAEV+VRPRLFNGFALVHMTLSGSAEIESDGRKVCIPQGHTALIAPK+NLRLWW Sbjct: 61 IFMLKYGAEVIVRPRLFNGFALVHMTLSGSAEIESDGRKVCIPQGHTALIAPKRNLRLWW 120 Query: 121 QAGSEQLILKVPLALFEELRAVGQRGPMDVPSVFLLPQQAAPYWDLLIQSLLRVLALP-- 178 QAGSEQLILKVPLALFEELRA GQ P+++PSV LLP QAAPYWDLLIQSLLRVLALP Sbjct: 121 QAGSEQLILKVPLALFEELRAAGQSAPLELPSVLLLPPQAAPYWDLLIQSLLRVLALPEQ 180 Query: 179 GQGAGQGEWVQHFERSAAQFLLSQLTSTVEPVHTSSSGQRAASESADSLVGAGKLQRLDM 238 GQG GQGEWV+HFERSA QFLLSQLTSTVEPV + S QR AS+ ADSLVGAGKLQRLDM Sbjct: 181 GQGQGQGEWVRHFERSAVQFLLSQLTSTVEPVTSPSGAQRGASQCADSLVGAGKLQRLDM 240 Query: 239 LERYIRSRLCAPLALADLAGAAGVSVRALNALCHQQYGVAPMDLLRNIRLDAVRERLLTH 298 LERYIRSRLCAPLALADLAGAAGVSVR LNALCHQQYGVAPMDLLRNIRLDAVRERLLTH Sbjct: 241 LERYIRSRLCAPLALADLAGAAGVSVRTLNALCHQQYGVAPMDLLRNIRLDAVRERLLTH 300 Query: 299 PEANITDTAFEFGFGHLGRFSAYYRERFGELPKQTRSVTR 338 P AN+TDTAFEFGFGHLGRFSAYYRERFGELPKQTR + R Sbjct: 301 PGANVTDTAFEFGFGHLGRFSAYYRERFGELPKQTRGMLR 340 >ref|YP_001811188.1| AraC family transcriptional regulator [Burkholderia ambifaria MC40-6] gb|ACB66972.1| transcriptional regulator, AraC family [Burkholderia ambifaria MC40-6] Length = 339 Score = 296 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 166/335 (49%), Positives = 216/335 (64%), Gaps = 9/335 (2%) Query: 4 TVHALSLEPLYRRRVFHSTRKVDCHAQVANELAEHDLFWKGDDVDTVLFKAAIQQLQIFM 63 T +A L LYR +F S + D H V+ ELAEH L WK D LFK + QL ++ Sbjct: 4 TPNAEVLSVLYRNCLFRSGLRTDAHDHVSMELAEHALRWKQGVPDAALFKGQLNQLTVYA 63 Query: 64 LKYGAEVVVRPRLFNGFALVHMTLSGSAEIESDGRKVCIPQGHTALIAPKKNLRLWWQAG 123 L+YGAEV V PR F+GF+LVH +L+G AEIE DG + + G TA++AP +RL W++G Sbjct: 64 LQYGAEVEVAPRPFDGFSLVHTSLAGGAEIECDGHVMGVSAGRTAVLAPTSRIRLRWRSG 123 Query: 124 SEQLILKVPLALFEELRAVGQRGPMDV-PSV---FLLPQQAAPYWDLLIQSLLRVLALPG 179 + QLI+KVP +L +RAVG R P D P + FLLP A WDL+ QSLL VLA+ Sbjct: 124 TRQLIVKVPDSL---MRAVGDRPPDDAAPGLAPGFLLPTALASQWDLIAQSLLNVLAVAD 180 Query: 180 QGAGQGEWVQHFERSAAQFLLSQLTSTVEPVHTSSSGQRAASESADSLVGAGKLQRLDML 239 G+ + EW HFERS A FLL + P ++G +A + G ++++D L Sbjct: 181 DGSIRTEWRDHFERSLALFLLVHCPPS--PAAAQANGAPSARGAPAESGSRGGIRQMDAL 238 Query: 240 ERYIRSRLCAPLALADLAGAAGVSVRALNALCHQQYGVAPMDLLRNIRLDAVRERLLTHP 299 +I +RLCAP++L DLA AAGVS+R+LN LC + +G PM+LLRNIRLDA R +LLT Sbjct: 239 HEFIHARLCAPISLEDLAKAAGVSLRSLNVLCRRYHGATPMELLRNIRLDAARAQLLTDQ 298 Query: 300 EANITDTAFEFGFGHLGRFSAYYRERFGELPKQTR 334 A+ITDTA FGFGHLGRFSAYY RF ELP+ T+ Sbjct: 299 TASITDTALTFGFGHLGRFSAYYFARFKELPRDTQ 333 >ref|ZP_02891872.1| transcriptional regulator, AraC family [Burkholderia ambifaria IOP40-10] gb|EDT02544.1| transcriptional regulator, AraC family [Burkholderia ambifaria IOP40-10] Length = 339 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 166/335 (49%), Positives = 216/335 (64%), Gaps = 9/335 (2%) Query: 4 TVHALSLEPLYRRRVFHSTRKVDCHAQVANELAEHDLFWKGDDVDTVLFKAAIQQLQIFM 63 T +A L LYR +F S + D H V+ ELAEH L WK D LFK + QL ++ Sbjct: 4 TPNAEVLSVLYRNCLFRSGLRTDAHDHVSMELAEHALRWKQGVPDAALFKGQLNQLTVYA 63 Query: 64 LKYGAEVVVRPRLFNGFALVHMTLSGSAEIESDGRKVCIPQGHTALIAPKKNLRLWWQAG 123 L+YGAEV V PR F+GF+LVH +L+G AEIE DG + + G TA++AP +RL W++G Sbjct: 64 LQYGAEVEVAPRPFDGFSLVHTSLAGGAEIECDGHVMGVSAGRTAVLAPTSRVRLRWRSG 123 Query: 124 SEQLILKVPLALFEELRAVGQRGPMDV-PSV---FLLPQQAAPYWDLLIQSLLRVLALPG 179 + QLI+KVP +L +RAVG R P D P + FLLP A WDL+ QSLL VLA+ Sbjct: 124 TRQLIVKVPDSL---MRAVGGRPPGDAAPGLAPGFLLPTALASQWDLIAQSLLNVLAVAD 180 Query: 180 QGAGQGEWVQHFERSAAQFLLSQLTSTVEPVHTSSSGQRAASESADSLVGAGKLQRLDML 239 G+ + EW HFERS A FLL + P ++G +A + G ++++D L Sbjct: 181 DGSIRTEWRDHFERSLALFLLVHCPPS--PAAAQANGAPSARGAPAESGSRGGIRQMDAL 238 Query: 240 ERYIRSRLCAPLALADLAGAAGVSVRALNALCHQQYGVAPMDLLRNIRLDAVRERLLTHP 299 +I +RLCAP++L DLA AAGVS+R+LN LC + +G PM+LLRNIRLDA R +LLT Sbjct: 239 HEFIHARLCAPISLEDLARAAGVSLRSLNVLCRRYHGATPMELLRNIRLDAARAQLLTDQ 298 Query: 300 EANITDTAFEFGFGHLGRFSAYYRERFGELPKQTR 334 A+ITDTA FGFGHLGRFSAYY RF ELP+ T+ Sbjct: 299 TASITDTALTFGFGHLGRFSAYYFARFKELPRDTQ 333 >ref|YP_932622.1| AraC family transcriptional regulator [Azoarcus sp. BH72] emb|CAL93735.1| putative AraC-family transcriptional regulator [Azoarcus sp. BH72] Length = 346 Score = 285 bits (728), Expect = 9e-75, Method: Composition-based stats. Identities = 157/338 (46%), Positives = 212/338 (62%), Gaps = 15/338 (4%) Query: 8 LSLEPLYRRRVFHSTRKVDCHAQVANELAEHDLFWKGDDVDTVLFKAAIQQLQIFMLKYG 67 L L +YR VF S V HAQ++ EL+EHDL W+ VDT LF+A + ++ + L+YG Sbjct: 7 LDLSKVYRNCVFQSRSAVTSHAQLSRELSEHDLEWRRGSVDTALFRADVNRMSLLALRYG 66 Query: 68 AEVVVRPRLFNGFALVHMTLSGSAEIESDGRKVCIPQGHTALIAPKKNLRLWWQAGSEQL 127 AEV VRP F FALV M L G+AEIE DG ++ + QG A++AP++ +RL WQ G EQL Sbjct: 67 AEVEVRPEPFKDFALVQMPLRGAAEIECDGVRLTVAQGEAAVVAPRRQIRLVWQPGCEQL 126 Query: 128 ILKVPLALFEELRA---VGQRGPMD-------VPSVFLLPQQAAPYWDLLIQSLLRVLAL 177 +LKVP L ++ + R P D + F++ + W L+Q LL +L Sbjct: 127 LLKVPFELLRQVSCHTCIRSRCPDDASDCGVGLEPAFVIERGFNLQWRALVQQLLNLLPA 186 Query: 178 PGQGAGQGEWVQHFERSAAQFLLSQLTSTVEPVHTSSSGQRAASESADSLVGAGKL--QR 235 PG+ W+ FE++ A FLL+ + V +G +E+ L + +L ++ Sbjct: 187 PGEAGLHPGWLNQFEQTVALFLLAHQPAAVGRDLDDDAG---PAEAVIELTASSRLAERK 243 Query: 236 LDMLERYIRSRLCAPLALADLAGAAGVSVRALNALCHQQYGVAPMDLLRNIRLDAVRERL 295 LD +E Y+RSRL AP++LADLA AAGVS R LN LCH+ GVAPM LLR++RLDA R RL Sbjct: 244 LDAVEDYMRSRLFAPISLADLAKAAGVSARTLNILCHRYRGVAPMVLLRHVRLDAARARL 303 Query: 296 LTHPEANITDTAFEFGFGHLGRFSAYYRERFGELPKQT 333 L P A++T+ A E+GFGHLGRFSAYYRERFGELP+ T Sbjct: 304 LADPFASVTEVALEYGFGHLGRFSAYYRERFGELPRDT 341 >gb|AAL86584.1| hypothetical protein [Delftia acidovorans] Length = 343 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 151/332 (45%), Positives = 207/332 (62%), Gaps = 5/332 (1%) Query: 7 ALSLEPLYRRRVFHSTRKVDCHAQVANELAEHDLFWKGDDVDTVLFKAAIQQLQIFMLKY 66 + L L R +F ++ H ++A+ELA+HDL W+ VDT ++K + L++FML Y Sbjct: 11 SFDLSNLQRNCIFRCESPMESHEKIAHELADHDLRWRRGAVDTGMYKVGVHALEMFMLHY 70 Query: 67 GAEVVVRPRLFNGFALVHMTLSGSAEIESDGRKVCIPQGHTALIAPKKNLRLWWQAGSEQ 126 GAEV VRPR+ GFALVH++L G+ +I SD +++ + G A +AP+KN R+ WQ G++Q Sbjct: 71 GAEVEVRPRVPEGFALVHLSLKGAIDIISDEQRITVSPGEVAYLAPRKNFRMLWQRGAQQ 130 Query: 127 LILKVPLALFEELRAVGQRGP-MDVPSVFLLPQQAAPYWDLLIQSLLRVLALPGQGAGQG 185 LILKVP L + V + G +D+PS L AA W L +QSLL + P + Sbjct: 131 LILKVPDTLLRSI--VAEAGACLDLPSTMRLTPAAARQWHLFMQSLLNIGTAPNELRLDE 188 Query: 186 EWVQHFERSAAQFLLSQLTSTVEPVH--TSSSGQRAASESADSLVGAGKLQRLDMLERYI 243 WV HFE++ A FLLSQ S P ++S S+ + + L+RL+ +ERYI Sbjct: 189 GWVDHFEKNIAFFLLSQRPSQQRPRDGVATASPPVLIRSSSCTGGTSSALERLEAMERYI 248 Query: 244 RSRLCAPLALADLAGAAGVSVRALNALCHQQYGVAPMDLLRNIRLDAVRERLLTHPEANI 303 R LCAP+ + DLA AAGVSVR LN +C + PM +LRNIRLDA R LL + ++ Sbjct: 249 RRHLCAPVGVIDLARAAGVSVRTLNIICREYRRETPMQVLRNIRLDAARSALLLNQSVSV 308 Query: 304 TDTAFEFGFGHLGRFSAYYRERFGELPKQTRS 335 T AF++GFGHLGRFSAYY+ERFGELP T S Sbjct: 309 TQAAFDYGFGHLGRFSAYYKERFGELPSLTSS 340