BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4563.p (404 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777053.1| transcription regulator protein [Herbaspiril... 555 e-156 ref|YP_001967704.1| putative transcriptional regulatory protein ... 350 2e-94 ref|YP_001267376.1| LysR family transcriptional regulator [Pseud... 316 4e-84 ref|NP_251200.1| transcriptional regulator CatR [Pseudomonas aer... 315 1e-83 gb|ADR59697.1| CatR [Pseudomonas putida BIRD-1] 313 2e-83 >ref|YP_003777053.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65145.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 279/299 (93%), Positives = 294/299 (98%) Query: 105 VELRHLKYFNAVASTLSFSRAAELLHIAQPPLSRQIRQLEEMLGAELIDRASRPIALTMA 164 +ELRHLKYFNAVASTLSFSRAAELLHIAQPPLSRQIRQLEEMLG ELIDRASRPIALTMA Sbjct: 1 MELRHLKYFNAVASTLSFSRAAELLHIAQPPLSRQIRQLEEMLGVELIDRASRPIALTMA 60 Query: 165 GKFFYEQTLQVLSRLEQIEEGTRVIAHGQQHWFNIGFVPSALYGLLPEMIKRFRADMPDI 224 GKFFYEQTLQVLSRLEQIEEGTRVIA G+QHWFNIGFVPSALYGLLPEMIKRFR +MP+I Sbjct: 61 GKFFYEQTLQVLSRLEQIEEGTRVIARGRQHWFNIGFVPSALYGLLPEMIKRFRTEMPEI 120 Query: 225 EIGFSEIVTMEQIEALKSGRIDVGFGRLPISDPDILCETIVEEPLVAVFPLGHPLLARSK 284 EIGFSEIVTMEQ+EALKSGRIDVGFGRLPISDPDI+CETIVEEPLVAVFPLGHPLLAR+K Sbjct: 121 EIGFSEIVTMEQVEALKSGRIDVGFGRLPISDPDIVCETIVEEPLVAVFPLGHPLLARNK 180 Query: 285 VTLAQLAEERFILYPAKPRPSYADQVLDIFSSRALRPAIVKEANEMQTAIGLVAAGVGVT 344 VTLAQLA +RFILYPA+PRPSYADQVLDIFSSRALRP+IVKEANEMQTAIGLVAAGVGVT Sbjct: 181 VTLAQLAAQRFILYPARPRPSYADQVLDIFSSRALRPSIVKEANEMQTAIGLVAAGVGVT 240 Query: 345 LVPRSVQGLHRSDVVYRPLSNKGVHSPVIMNFRANDRSLLLQTLRSTAASIARMHAEEY 403 LVPRSVQGLHRSDVVYRPLSNKGVHSPVIMNFRANDRSLLL+ LR+TAA+IAR+HA+EY Sbjct: 241 LVPRSVQGLHRSDVVYRPLSNKGVHSPVIMNFRANDRSLLLERLRTTAATIARLHAQEY 299 >ref|YP_001967704.1| putative transcriptional regulatory protein CatR [Comamonas testosteroni CNB-1] gb|ABM06230.1| putative transcriptional regulatory protein CatR [Comamonas testosteroni CNB-1] Length = 325 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 185/317 (58%), Positives = 229/317 (72%), Gaps = 2/317 (0%) Query: 83 ILCAWRMNVQYQISIMVCLGGI--VELRHLKYFNAVASTLSFSRAAELLHIAQPPLSRQI 140 IL A VQY++S L GI +ELRHL+YF AVA L+F RAA+ LHIAQPPLSRQI Sbjct: 4 ILIAQTARVQYRLSPFQYLQGIFIMELRHLRYFAAVARELNFGRAAQQLHIAQPPLSRQI 63 Query: 141 RQLEEMLGAELIDRASRPIALTMAGKFFYEQTLQVLSRLEQIEEGTRVIAHGQQHWFNIG 200 RQLEE LGAEL DR +RP+ LT AG+FF+ QTLQ+L R+ + T +A G + WF IG Sbjct: 64 RQLEEELGAELFDRKARPLRLTPAGQFFHTQTLQLLERIGDVCAMTERMARGARPWFGIG 123 Query: 201 FVPSALYGLLPEMIKRFRADMPDIEIGFSEIVTMEQIEALKSGRIDVGFGRLPISDPDIL 260 FVPSALYGLLPE+I+RFR P +E+G E+ T+ QI+ALK+GRIDVGFGRL +SDP I Sbjct: 124 FVPSALYGLLPEVIRRFRMAQPSVEVGLIELTTVLQIDALKAGRIDVGFGRLSLSDPRIS 183 Query: 261 CETIVEEPLVAVFPLGHPLLARSKVTLAQLAEERFILYPAKPRPSYADQVLDIFSSRALR 320 E + EE +V P GHPL R +++LAQLA E +LYPAKPRPSYADQVL++F S ++ Sbjct: 184 GEVVSEEAMVVALPTGHPLARRKRLSLAQLAREPLLLYPAKPRPSYADQVLEVFRSHGIQ 243 Query: 321 PAIVKEANEMQTAIGLVAAGVGVTLVPRSVQGLHRSDVVYRPLSNKGVHSPVIMNFRAND 380 P I EANE+QT IGLV +G+G LVP SVQGL R V Y PLS+KG SP+IMN RA D Sbjct: 244 PTISLEANELQTVIGLVVSGIGYALVPESVQGLRRDGVDYVPLSDKGSRSPIIMNIRAGD 303 Query: 381 RSLLLQTLRSTAASIAR 397 S LL ++ +++R Sbjct: 304 ASPLLAEFQALVMAVSR 320 >ref|YP_001267376.1| LysR family transcriptional regulator [Pseudomonas putida F1] gb|ABQ78192.1| transcriptional regulator, LysR family [Pseudomonas putida F1] Length = 300 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 164/285 (57%), Positives = 209/285 (73%), Gaps = 3/285 (1%) Query: 102 GGIVELRHLKYFNAVASTLSFSRAAELLHIAQPPLSRQIRQLEEMLGAELIDRASRPIAL 161 GG++ELRHL+YF +A TL+F+RAAELLHIAQPPLSRQI QLE+ LG L+ R RP+ L Sbjct: 8 GGLMELRHLRYFKVLAETLNFTRAAELLHIAQPPLSRQISQLEDQLGTLLVVR-ERPLRL 66 Query: 162 TMAGKFFYEQTLQVLSRLEQIEEGTRVIAHGQQHWFNIGFVPSALYGLLPEMIKRFRADM 221 T AG+FFYEQT VL +L+ I + TR I GQ+ W IGF PS LY +LPE+I+ R D Sbjct: 67 TEAGRFFYEQTCTVLQQLQNISDNTRRIGQGQRQWLGIGFAPSTLYTVLPELIRELRQD- 125 Query: 222 PDIEIGFSEIVTMEQIEALKSGRIDVGFGRLPISDPDILCETIVEEPLVAVFPLGHPLLA 281 D+E+G +E+ T++Q+EALKSGRID+GFGR+ I DP I + + E+PLVAV P GHPL A Sbjct: 126 SDLELGLNEMTTLQQVEALKSGRIDIGFGRIRIDDPVIHQQVLCEDPLVAVLPKGHPL-A 184 Query: 282 RSKVTLAQLAEERFILYPAKPRPSYADQVLDIFSSRALRPAIVKEANEMQTAIGLVAAGV 341 S ++LAQLA E FILYPA PRPSYAD VL +F+ + + + ANE+QTAIGLVA GV Sbjct: 185 GSPLSLAQLAGEAFILYPANPRPSYADHVLALFAHHGMSIRVSQWANELQTAIGLVAVGV 244 Query: 342 GVTLVPRSVQGLHRSDVVYRPLSNKGVHSPVIMNFRANDRSLLLQ 386 GVTLVP SVQ HR D+ Y L + G SP+I++ R D S +++ Sbjct: 245 GVTLVPASVQQQHRPDIEYVGLLDSGAVSPIILSRRKGDVSPIVK 289 >ref|NP_251200.1| transcriptional regulator CatR [Pseudomonas aeruginosa PAO1] ref|ZP_01365874.1| hypothetical protein PaerPA_01003003 [Pseudomonas aeruginosa PACS2] ref|YP_790727.1| transcriptional regulator CatR [Pseudomonas aeruginosa UCBPP-PA14] ref|ZP_04934263.1| transcriptional regulator CatR [Pseudomonas aeruginosa 2192] ref|ZP_06878545.1| transcriptional regulator CatR [Pseudomonas aeruginosa PAb1] ref|ZP_07793596.1| transcriptional regulator CatR [Pseudomonas aeruginosa 39016] gb|AAG05898.1|AE004678_4 transcriptional regulator CatR [Pseudomonas aeruginosa PAO1] gb|AAK52295.1| putative transcriptional regulatory protein CatR [Pseudomonas putida] gb|ABJ11690.1| transcriptional regulator CatR [Pseudomonas aeruginosa UCBPP-PA14] gb|EAZ58382.1| transcriptional regulator CatR [Pseudomonas aeruginosa 2192] gb|EFQ38692.1| transcriptional regulator CatR [Pseudomonas aeruginosa 39016] gb|EGM21000.1| transcriptional regulator CatR [Pseudomonas aeruginosa 138244] gb|EGM21848.1| transcriptional regulator CatR [Pseudomonas aeruginosa 152504] dbj|GAA18096.1| transcriptional regulator CatR [Pseudomonas aeruginosa NCMG1179] gb|AEO75012.1| transcriptional regulator CatR [Pseudomonas aeruginosa M18] dbj|BAK90362.1| transcriptional regulator [Pseudomonas aeruginosa NCGM2.S1] Length = 290 Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 167/296 (56%), Positives = 216/296 (72%), Gaps = 6/296 (2%) Query: 105 VELRHLKYFNAVASTLSFSRAAELLHIAQPPLSRQIRQLEEMLGAELIDRASRPIALTMA 164 +ELRHL+YF A+A TL+F+RAAE LHIAQPPLSRQI+QLEEMLG L++R RP+ LT A Sbjct: 1 MELRHLRYFQALARTLNFTRAAEQLHIAQPPLSRQIQQLEEMLGVALLERG-RPLRLTEA 59 Query: 165 GKFFYEQTLQVLSRLEQIEEGTRVIAHGQQHWFNIGFVPSALYGLLPEMIKRFRADMPDI 224 G+FF+EQ+ +L +LE I + TR I GQ+ WF IGFVPSALYG+LPE+I+ R D P++ Sbjct: 60 GRFFHEQSATLLDQLESICDSTRRIGQGQRQWFGIGFVPSALYGVLPELIRHLRGD-PEL 118 Query: 225 EIGFSEIVTMEQIEALKSGRIDVGFGRLPISDPDILCETIVEEPLVAVFPLGHPLLARSK 284 E+G E+ T++Q+EALKSGRID+GFGR+ I DP I + EEPLVA P GHPLL + Sbjct: 119 ELGLLEMTTLQQVEALKSGRIDIGFGRIRIDDPAIRQSVLSEEPLVAALPAGHPLLGQP- 177 Query: 285 VTLAQLAEERFILYPAKPRPSYADQVLDIFSSRALRPAIVKEANEMQTAIGLVAAGVGVT 344 ++L +L+ E F+LYP +PRPSYAD VL +F++ L + + ANEMQTAIGLVAAG+G T Sbjct: 178 LSLERLSREPFVLYPGQPRPSYADHVLALFATHGLSLRVTQWANEMQTAIGLVAAGLGAT 237 Query: 345 LVPRSVQGLHRSDVVYRPLSNKGVHSPVIMNFRANDRSLLLQTLRSTAASIARMHA 400 LVP SVQ HR DV Y+ L++ + SP+I++ R D S LR A I R A Sbjct: 238 LVPASVQLQHRDDVAYQALADASLTSPIIVSRRQGDGS---PHLRRCLALIGREDA 290 >gb|ADR59697.1| CatR [Pseudomonas putida BIRD-1] Length = 290 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 163/282 (57%), Positives = 207/282 (73%), Gaps = 3/282 (1%) Query: 105 VELRHLKYFNAVASTLSFSRAAELLHIAQPPLSRQIRQLEEMLGAELIDRASRPIALTMA 164 +ELRHL+YF +A TL+F+RAAELLHIAQPPLSRQI QLE+ LG L+ R RP+ LT A Sbjct: 1 MELRHLRYFKVLAETLNFTRAAELLHIAQPPLSRQISQLEDQLGTLLVVR-ERPLRLTEA 59 Query: 165 GKFFYEQTLQVLSRLEQIEEGTRVIAHGQQHWFNIGFVPSALYGLLPEMIKRFRADMPDI 224 G+FFYEQT VL +L+ I + TR I GQ+ W IGF PS LY +LPE+I+ R D ++ Sbjct: 60 GRFFYEQTCTVLQQLQNISDNTRRIGQGQRQWLGIGFAPSTLYTVLPELIRELRQD-SEL 118 Query: 225 EIGFSEIVTMEQIEALKSGRIDVGFGRLPISDPDILCETIVEEPLVAVFPLGHPLLARSK 284 E+G +E+ T++Q+EALKSGRID+GFGR+ I DP I + + E+PLVAV P GHPL A S Sbjct: 119 ELGLNEMTTLQQVEALKSGRIDIGFGRIRIDDPVIHQQVLCEDPLVAVLPKGHPL-AGSP 177 Query: 285 VTLAQLAEERFILYPAKPRPSYADQVLDIFSSRALRPAIVKEANEMQTAIGLVAAGVGVT 344 +TLAQLA E FILYPA PRPSYAD VL +F+ + + + ANE+QTAIGLVA GVGVT Sbjct: 178 LTLAQLAGEAFILYPANPRPSYADHVLALFAHHGMSIRVSQWANELQTAIGLVAVGVGVT 237 Query: 345 LVPRSVQGLHRSDVVYRPLSNKGVHSPVIMNFRANDRSLLLQ 386 LVP SVQ HR+D+ Y L + G SP+I++ R D S ++Q Sbjct: 238 LVPASVQQQHRTDIEYVGLLDSGAVSPIILSRRKGDVSPIVQ 279