BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4558.p (357 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777048.1| CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-d... 621 e-176 ref|YP_003776715.1| chaperone activity ATPase [Herbaspirillum se... 273 3e-71 ref|NP_880522.1| CDP-6-deoxy-delta-3,4-glucoseen reductase [Bord... 270 3e-70 ref|YP_004754199.1| putative ferredoxin:Oxidoreductase FAD/NAD(P... 269 6e-70 ref|YP_004028241.1| Flavodoxin reductase family protein [Burkhol... 268 1e-69 >ref|YP_003777048.1| CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase [Herbaspirillum seropedicae SmR1] gb|ADJ65140.1| CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase protein [Herbaspirillum seropedicae SmR1] Length = 360 Score = 621 bits (1602), Expect = e-176, Method: Composition-based stats. Identities = 329/360 (91%), Positives = 341/360 (94%), Gaps = 3/360 (0%) Query: 1 MSEWFDVGHADDFAEGEVAPARAGSQAVAVFRLGEEIFALKDLCTHGNAKLSDGYVEDGC 60 MSEWFDVGHADDFAEGEVA ARAG QAVAVFRLGEEIFALKDLCTHGNAKLSDGYVEDGC Sbjct: 1 MSEWFDVGHADDFAEGEVAAARAGGQAVAVFRLGEEIFALKDLCTHGNAKLSDGYVEDGC 60 Query: 61 VECPLHQGLFDIRSGAPRCAPVTEAVRSFPVRVVAGRVEIGVGGEG---DAAAIASTEPA 117 VECPLHQGLFDIRSGAPRCAPVTEAVRSFPVRVVAGRVEIGVGGEG D +AS PA Sbjct: 61 VECPLHQGLFDIRSGAPRCAPVTEAVRSFPVRVVAGRVEIGVGGEGGGGDVLTVASPAPA 120 Query: 118 LQPVQATLESITRAAPDVAILRLRCAAPLSYRAGQYIDLLLEDGQRRSYSMATYARDGSD 177 Q VQATLES+TRAAPDVAILRLRCAAPLSYRAGQYIDLLLEDGQRRSYSMATYA+DGSD Sbjct: 121 AQQVQATLESLTRAAPDVAILRLRCAAPLSYRAGQYIDLLLEDGQRRSYSMATYAKDGSD 180 Query: 178 VLELHVRHLPGGLFTDRLFNGMQPGQQFSLEGPAGSFFMREGSEPVILLASGTGFAPVKA 237 +LELHVRHLPGGLFTDRLFNGMQPGQQFSLEGPAGSFFMREG++P+ILLASGTGFAPVKA Sbjct: 181 LLELHVRHLPGGLFTDRLFNGMQPGQQFSLEGPAGSFFMREGTQPLILLASGTGFAPVKA 240 Query: 238 LVEEAIATGSTRAMRLYWGGRRAADLYLDALCRDWAASLPWFEYVPVLSEADAASGWNGR 297 LVEEAIA+GSTRAMRLYWGGRRAADLYLDALCRDWAASLPWF+YVPVLSEADA SGW+GR Sbjct: 241 LVEEAIASGSTRAMRLYWGGRRAADLYLDALCRDWAASLPWFDYVPVLSEADATSGWSGR 300 Query: 298 TGFVHQAVMQDAPAMQSYQVYACGAPVVVESARRDFTATCGLPGTAFFADAFVSKADLRK 357 TG VH+AVMQD PAMQ YQVYACGAPVVVESARRDFTA CGL TAFFADAFVS+ADLRK Sbjct: 301 TGLVHRAVMQDVPAMQQYQVYACGAPVVVESARRDFTAACGLSETAFFADAFVSRADLRK 360 >ref|YP_003776715.1| chaperone activity ATPase [Herbaspirillum seropedicae SmR1] emb|CAM32597.1| CDP-6-deoxy-delta-3,4-glucoseen reductase [Herbaspirillum seropedicae] gb|ADJ64807.1| ATPase with chaperone activity, ATP-binding subunit protein [Herbaspirillum seropedicae SmR1] Length = 349 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 134/233 (57%), Positives = 174/233 (74%), Gaps = 4/233 (1%) Query: 128 ITRAAPDVAILRLRCAAP--LSYRAGQYIDLLLEDGQRRSYSMATYARDGSDVLELHVRH 185 + + A DV +L L+ A L Y+AGQY++ LL DG+RRSYSMAT A + + LH+RH Sbjct: 110 LDKVADDVIVLSLQLPANDRLQYKAGQYVEFLLRDGKRRSYSMAT-APHKDEHMSLHIRH 168 Query: 186 LPGGLFTDRLFNGMQPGQQFSLEGPAGSFFMREGSE-PVILLASGTGFAPVKALVEEAIA 244 LPGGLFTD++F ++ +EGP G+FF+RE S+ P+ILLASGTGFAP+KA+VE+ Sbjct: 169 LPGGLFTDQVFTTLKERDILRIEGPLGTFFLREDSDKPIILLASGTGFAPIKAIVEQLEH 228 Query: 245 TGSTRAMRLYWGGRRAADLYLDALCRDWAASLPWFEYVPVLSEADAASGWNGRTGFVHQA 304 GS R + LYWGGRR DLY+DALC+ W +LP F+YVPV+S A A W+GRTGFVH+A Sbjct: 229 AGSKRPVTLYWGGRRPQDLYMDALCQQWEQTLPNFKYVPVVSNAQAEDNWSGRTGFVHRA 288 Query: 305 VMQDAPAMQSYQVYACGAPVVVESARRDFTATCGLPGTAFFADAFVSKADLRK 357 VM+D P + +QVYACGAP+VVESA+RDF+A CGLP F+AD+F S+ADL K Sbjct: 289 VMEDFPDLSGHQVYACGAPIVVESAQRDFSAQCGLPQDEFYADSFTSEADLAK 341 >ref|NP_880522.1| CDP-6-deoxy-delta-3,4-glucoseen reductase [Bordetella pertussis Tohama I] emb|CAE42103.1| CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehy drase reductase [Bordetella pertussis Tohama I] gb|AEE67138.1| CDP-6-deoxy-delta-3,4-glucoseen reductase [Bordetella pertussis CS] Length = 348 Score = 270 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 138/252 (54%), Positives = 184/252 (73%), Gaps = 8/252 (3%) Query: 113 STEPALQPVQATLESITRAAPDVAILRLRCAAPLSYR--AGQYIDLLLEDGQRRSYSMAT 170 +++ ++ + + +++I R APDVA+L+L+ A +R AGQYI+++L+DG+RRSYSMA Sbjct: 95 ASDIQIRKLPSRVQTIERVAPDVAVLKLQLPASEQFRYYAGQYIEVILKDGKRRSYSMAG 154 Query: 171 YARDGSDVLELHVRHLPGGLFTDRLFNG----MQPGQQFSLEGPAGSFFMREGSE-PVIL 225 GS LELH+RH+PGGLFTD +F M+ + LEGP GSFF+RE S+ P++L Sbjct: 155 APHTGSP-LELHIRHMPGGLFTDHVFGAGDTQMKEREILRLEGPFGSFFLREDSDKPIVL 213 Query: 226 LASGTGFAPVKALVEEAIATGSTRAMRLYWGGRRAADLYLDALCRDWAASLPWFEYVPVL 285 LASGTGFAPVKA+VE I R + LYWGGRR DLY DAL + WA LP F YVPV+ Sbjct: 214 LASGTGFAPVKAIVEHMIHNQIQRPVVLYWGGRRPRDLYHDALAQSWAGRLPGFRYVPVV 273 Query: 286 SEADAASGWNGRTGFVHQAVMQDAPAMQSYQVYACGAPVVVESARRDFTATCGLPGTAFF 345 S+A GW+GRTG+VH+AVMQD P + Y+VYACG P++V++ARR+F+A CGLP AF+ Sbjct: 274 SDALDEDGWSGRTGYVHEAVMQDLPDLSGYEVYACGTPLMVDAARREFSAQCGLPAEAFY 333 Query: 346 ADAFVSKADLRK 357 ADAF S+ADL K Sbjct: 334 ADAFTSEADLAK 345 >ref|YP_004754199.1| putative ferredoxin:Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region [Collimonas fungivorans Ter331] gb|AEK63376.1| putative Ferredoxin:Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region [Collimonas fungivorans Ter331] Length = 341 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 133/231 (57%), Positives = 167/231 (72%), Gaps = 4/231 (1%) Query: 128 ITRAAPDVAILRLRCAAP--LSYRAGQYIDLLLEDGQRRSYSMATYARDGSDVLELHVRH 185 + + A DV +L L+ A L Y AGQY++ +L DG+RRSYSMA A + L LH+RH Sbjct: 110 LDKVADDVIVLSLQLPANERLQYLAGQYVEFMLRDGKRRSYSMAN-APYKDEYLTLHIRH 168 Query: 186 LPGGLFTDRLFNGMQPGQQFSLEGPAGSFFMREGSE-PVILLASGTGFAPVKALVEEAIA 244 +PGGLFTD++F M+ LEGP G+FF+RE S+ P++LLASGTGFAP+KALVE+ Sbjct: 169 MPGGLFTDQVFTTMKERDILRLEGPLGTFFLREDSDKPMVLLASGTGFAPIKALVEQCAH 228 Query: 245 TGSTRAMRLYWGGRRAADLYLDALCRDWAASLPWFEYVPVLSEADAASGWNGRTGFVHQA 304 TGS R + LYWGGRR DLY+ ALC +WAA+LP F +VPV+S A W GR GFVHQA Sbjct: 229 TGSQRPITLYWGGRRPQDLYMMALCEEWAATLPDFTFVPVISNAQPEDQWQGRNGFVHQA 288 Query: 305 VMQDAPAMQSYQVYACGAPVVVESARRDFTATCGLPGTAFFADAFVSKADL 355 V+ D P + +YQVYACGAPVVVESA+RDF A C LP F+AD+F S+ADL Sbjct: 289 VIDDLPDLSAYQVYACGAPVVVESAQRDFVALCKLPAEEFYADSFTSEADL 339 >ref|YP_004028241.1| Flavodoxin reductase family protein [Burkholderia rhizoxinica HKI 454] emb|CBW74097.1| Flavodoxin reductase family protein [Burkholderia rhizoxinica HKI 454] Length = 343 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 133/234 (56%), Positives = 170/234 (72%), Gaps = 4/234 (1%) Query: 125 LESITRAAPDVAILRLRCAAP--LSYRAGQYIDLLLEDGQRRSYSMATYARDGSDVLELH 182 + ++ R A DV +L+L+ A L Y AGQYI+ +L+DG RRSYSMA+ A LELH Sbjct: 107 VNALERVAHDVIVLKLQLPANERLQYLAGQYIEFILKDGTRRSYSMAS-APHHEGPLELH 165 Query: 183 VRHLPGGLFTDRLFNGMQPGQQFSLEGPAGSFFMREGSE-PVILLASGTGFAPVKALVEE 241 +RH+PGG+FTD +F M+ EGP G+FF+RE ++ P++LLASGTGFAP+KA++E Sbjct: 166 IRHMPGGVFTDHVFGAMKERDILRFEGPLGTFFLREDADKPIVLLASGTGFAPIKAIIEH 225 Query: 242 AIATGSTRAMRLYWGGRRAADLYLDALCRDWAASLPWFEYVPVLSEADAASGWNGRTGFV 301 AI G TR M LYWGGRR DLYL +L WA +P F++VPVLSE D A GW GRTGFV Sbjct: 226 AIFKGMTRPMTLYWGGRRRGDLYLASLAEQWARDVPNFKFVPVLSEPDPADGWQGRTGFV 285 Query: 302 HQAVMQDAPAMQSYQVYACGAPVVVESARRDFTATCGLPGTAFFADAFVSKADL 355 H+AV++D P + YQVYACGAPV+VE+A+RDFTA GLP F+AD+F S ADL Sbjct: 286 HRAVVEDLPDLSGYQVYACGAPVMVEAAQRDFTAHHGLPADEFYADSFTSAADL 339