BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4557.p (334 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777047.1| amino acid ABC transporter periplasmic prote... 487 e-135 ref|YP_287239.1| extracellular ligand-binding receptor [Dechloro... 280 3e-73 ref|YP_004234560.1| extracellular ligand-binding receptor [Acido... 278 9e-73 ref|YP_999326.1| extracellular ligand-binding receptor [Verminep... 278 1e-72 ref|YP_971511.1| extracellular ligand-binding receptor [Acidovor... 277 1e-72 >ref|YP_003777047.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ65139.1| ABC-type amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 392 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 266/272 (97%), Positives = 268/272 (98%) Query: 1 MNRLTKVAGAVMMAMAAGASLSAQAADVVKVGFLTTLSGPASAPGVDEREGFMLAMKMLG 60 MNRL+KVAGAVMMAMA GASL AQAADVVKVGFLTTLSGPASAPGVDEREGFMLA+K LG Sbjct: 1 MNRLSKVAGAVMMAMAVGASLPAQAADVVKVGFLTTLSGPASAPGVDEREGFMLALKTLG 60 Query: 61 NKLGGVPAEVIVVDDQFSPDAAKQGADRLIKREKVDILSGFVYSNILLAVAPAAFASKTV 120 NKLGGVPAEVIVVDDQFSPDAAKQGADRLIKREKVDILSGFVYSNILLAVAPAAFASKTV Sbjct: 61 NKLGGVPAEVIVVDDQFSPDAAKQGADRLIKREKVDILSGFVYSNILLAVAPAAFASKTV 120 Query: 121 VVSANAGPAQLAGAGCNPYFFSASYQNDATHEAAGKLMADKGYQRVAIIAPNYPAGKDAS 180 VVSANAGPAQLAGAGCNPYFFSASYQNDA HEAAGKLMADKGYQRVAIIAPNYPAGKDAS Sbjct: 121 VVSANAGPAQLAGAGCNPYFFSASYQNDAAHEAAGKLMADKGYQRVAIIAPNYPAGKDAS 180 Query: 181 AGFKRFLKKDPAVELFPKLGQLDFATEIAQLRAANIDALYFFLPGGMGVNFVKQYAAAGM 240 AGFKRFLKKDPAVELFPKLGQLDFATEIAQLRAANIDALYFFLPGGMGVNFVKQYAAAGM Sbjct: 181 AGFKRFLKKDPAVELFPKLGQLDFATEIAQLRAANIDALYFFLPGGMGVNFVKQYAAAGM 240 Query: 241 DPKIVRVMPAYDADQQMLSNGDLIAGVANTGQ 272 DPKIVRVMPAYDADQQMLSNGDLIAGVANTGQ Sbjct: 241 DPKIVRVMPAYDADQQMLSNGDLIAGVANTGQ 272 >ref|YP_287239.1| extracellular ligand-binding receptor [Dechloromonas aromatica RCB] gb|AAZ48769.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Dechloromonas aromatica RCB] Length = 388 Score = 280 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 136/252 (53%), Positives = 183/252 (72%), Gaps = 1/252 (0%) Query: 22 SAQAADVVKVGFLTTLSGPASAPGVDEREGFMLAMKMLGNKLGGVPAEVIVVDDQFSPDA 81 SA AAD +KVG ++TLSGP + GVD R+GF LAMK L KLG +PAEV++ DDQ +PD Sbjct: 17 SAHAADQIKVGLVSTLSGPGAGLGVDIRDGFNLAMKHLNGKLGNLPAEVLIADDQQNPDI 76 Query: 82 AKQGADRLIKREKVDILSGFVYSNILLAVAPAAFASKTVVVSANAGPAQLAGAGCNPYFF 141 AKQ AD+ +K++KVD ++G V+SNI+LAV P F +KT +SANAGP+Q AG CNP+FF Sbjct: 77 AKQTADKFLKKDKVDFMTGIVFSNIMLAVGPTVFENKTFYISANAGPSQYAGEQCNPFFF 136 Query: 142 SASYQNDATHEAAGKLMADKGYQRVAIIAPNYPAGKDASAGFKRFLKKDPAVELFPKLGQ 201 + ++QND HEA GK++ DKGY+ V I+ PNYP GKDA +GFKR+ K A E++ KLGQ Sbjct: 137 NVAWQNDNLHEAVGKVVQDKGYKNVVIVTPNYPGGKDAVSGFKRYYKGKVADEIYTKLGQ 196 Query: 202 LDFATEIAQLRAANIDALYFFLPGGMGVNFVKQYAAAGMDPKIVRVMPAYDADQQMLSN- 260 LD+A E+AQ+RA DAL+FFLPGGMG+NFVKQ+ +AG+ P + AD+ ++ Sbjct: 197 LDYAAELAQIRATKPDALFFFLPGGMGINFVKQFVSAGLSRDTQLFAPGFSADEDVIKAV 256 Query: 261 GDLIAGVANTGQ 272 G + G+ N+ Sbjct: 257 GSSMMGMFNSSH 268 >ref|YP_004234560.1| extracellular ligand-binding receptor [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX45993.1| Extracellular ligand-binding receptor [Acidovorax avenae subsp. avenae ATCC 19860] Length = 400 Score = 278 bits (711), Expect = 9e-73, Method: Composition-based stats. Identities = 140/247 (56%), Positives = 185/247 (74%), Gaps = 1/247 (0%) Query: 27 DVVKVGFLTTLSGPASAPGVDEREGFMLAMKMLGNKLGGVPAEVIVVDDQFSPDAAKQGA 86 D VKVG LTTLSGP S G+D R+GF LA+K KLGG+PAEV V DDQ SPDAAKQ A Sbjct: 33 DKVKVGLLTTLSGPGSGLGIDIRDGFQLAVKQGAGKLGGLPAEVTVADDQQSPDAAKQTA 92 Query: 87 DRLIKREKVDILSGFVYSNILLAVAPAAFASKTVVVSANAGPAQLAGAGCNPYFFSASYQ 146 DRL+KRE+VD ++G V+SN++LAV F S+T +SANAGP+Q AGA CNPYFFSASYQ Sbjct: 93 DRLVKRERVDFMTGIVFSNVMLAVGQPVFQSRTFYISANAGPSQYAGAQCNPYFFSASYQ 152 Query: 147 NDATHEAAGKLMADKGYQRVAIIAPNYPAGKDASAGFKRFLKKDPAVELFPKLGQLDFAT 206 ND HEA GK + D+G+++VA++APNYPAGKDA AGFKRF K + +E + L QLD+ Sbjct: 153 NDNMHEAVGKTVQDRGFKKVALLAPNYPAGKDALAGFKRFYKGEVVMEAYTPLSQLDYGA 212 Query: 207 EIAQLRAANIDALYFFLPGGMGVNFVKQYAAAGMDPKIVRVMPAYDADQQML-SNGDLIA 265 E++++RA+ DA++ FLPGG+GVNFVKQ+ AG+ ++ P + AD+ ++ + GD + Sbjct: 213 ELSKIRASGADAVFVFLPGGLGVNFVKQFTGAGLGKEMKLFAPGFSADEDVIRAVGDAMV 272 Query: 266 GVANTGQ 272 G+ N+ Q Sbjct: 273 GIFNSSQ 279 >ref|YP_999326.1| extracellular ligand-binding receptor [Verminephrobacter eiseniae EF01-2] gb|ABM60308.1| Extracellular ligand-binding receptor [Verminephrobacter eiseniae EF01-2] Length = 389 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 144/273 (52%), Positives = 193/273 (70%), Gaps = 5/273 (1%) Query: 1 MNRLTKVAGAVMMAMAAGASLSAQAADVVKVGFLTTLSGPASAPGVDEREGFMLAMKMLG 60 M R+T+ +++ A ++A A +++G +TTLSG + PGVD R+G LA+K L Sbjct: 1 MKRITRWG----LSLMACTGMAAAGAAELRIGVMTTLSGAQAVPGVDMRDGIELAVKQLS 56 Query: 61 NKLGGVPAEVIVVDDQFSPDAAKQGADRLIKREKVDILSGFVYSNILLAVAPAAFASKTV 120 K+GG P +IV DDQF+P AAKQ A+RL+K++KV +L+G +YSNILLA AP A + V Sbjct: 57 GKVGGQPTRLIVADDQFNPGAAKQIAERLVKKDKVQVLTGIIYSNILLAAAPVALENGNV 116 Query: 121 VVSANAGPAQLAGAGCNPYFFSASYQNDATHEAAGKLMADKGYQRVAIIAPNYPAGKDAS 180 +S+NAGP+Q AGA C+ FFS S+QNDA HEAAGK DK ++RV ++APNYPAG+DA+ Sbjct: 117 YLSSNAGPSQYAGAQCDSGFFSVSWQNDAVHEAAGKYAQDKEFKRVMLVAPNYPAGRDAT 176 Query: 181 AGFKRFLKKDPAVELFPKLGQLDFATEIAQLRAANIDALYFFLPGGMGVNFVKQYAAAGM 240 GFKRF K + EL+PKLGQLDFA EIA+LR DA+YFFLPGGMG+NF+KQY AAG+ Sbjct: 177 TGFKRFFKGEVVEELYPKLGQLDFAVEIARLREQRADAVYFFLPGGMGINFIKQYRAAGI 236 Query: 241 DPKIVRVMPAYDADQQML-SNGDLIAGVANTGQ 272 K + + ADQ ++GD + G+ NTG Sbjct: 237 PDKTRLLTSQFSADQDTFAASGDAMLGIYNTGH 269 >ref|YP_971511.1| extracellular ligand-binding receptor [Acidovorax citrulli AAC00-1] gb|ABM33737.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Acidovorax citrulli AAC00-1] Length = 399 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 139/247 (56%), Positives = 185/247 (74%), Gaps = 1/247 (0%) Query: 27 DVVKVGFLTTLSGPASAPGVDEREGFMLAMKMLGNKLGGVPAEVIVVDDQFSPDAAKQGA 86 D VKVG LTTLSGP S G+D R+GF LA+K +LGG+PAEV V DDQ SPDAAKQ A Sbjct: 32 DKVKVGLLTTLSGPGSGLGIDIRDGFQLAVKQGAGRLGGLPAEVTVADDQQSPDAAKQTA 91 Query: 87 DRLIKREKVDILSGFVYSNILLAVAPAAFASKTVVVSANAGPAQLAGAGCNPYFFSASYQ 146 DRL+KRE+VD ++G V+SN++LAV F S+T +SANAGP+Q AGA CNPYFFSASYQ Sbjct: 92 DRLVKRERVDFMTGIVFSNVMLAVGQPVFQSRTFYISANAGPSQYAGAQCNPYFFSASYQ 151 Query: 147 NDATHEAAGKLMADKGYQRVAIIAPNYPAGKDASAGFKRFLKKDPAVELFPKLGQLDFAT 206 ND HEA GK + D+G+++VA++APNYPAGKDA AGFKRF K + +E + L QLD+ Sbjct: 152 NDNMHEAVGKTVQDRGFKKVALLAPNYPAGKDALAGFKRFYKGEVVMEAYTPLSQLDYGA 211 Query: 207 EIAQLRAANIDALYFFLPGGMGVNFVKQYAAAGMDPKIVRVMPAYDADQQML-SNGDLIA 265 E++++RA+ DA++ FLPGG+GVNFVKQ+ AG+ ++ P + AD+ ++ + GD + Sbjct: 212 ELSKIRASGADAVFVFLPGGLGVNFVKQFTGAGLGKEMKLFAPGFSADEDVIRAVGDAMV 271 Query: 266 GVANTGQ 272 G+ N+ Q Sbjct: 272 GIFNSSQ 278