BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4556.p         (94 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777047.1| amino acid ABC transporter periplasmic prote...   171   5e-41
emb|CAM78191.1| ABC transporter substrate binding protein [Magne...   102   2e-20
ref|YP_002942559.1| extracellular ligand-binding receptor [Vario...   101   3e-20
ref|YP_002942568.1| extracellular ligand-binding receptor [Vario...   101   4e-20
ref|YP_287239.1| extracellular ligand-binding receptor [Dechloro...   101   5e-20

>ref|YP_003777047.1| amino acid ABC transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ65139.1| ABC-type amino acid transport system, periplasmic component protein
           [Herbaspirillum seropedicae SmR1]
          Length = 392

 Score =  171 bits (432), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 89/94 (94%), Positives = 92/94 (97%)

Query: 1   MFASQAYDAAMLIDSAVKAIGGKVENREALIAAIKAANFKSVRGGFKFAANHFPIQNQYA 60
           MFASQAYDAAMLIDSAVKA+GGKVENREALIAAIK ANFKSVRGGF+FAANHFPIQNQYA
Sbjct: 299 MFASQAYDAAMLIDSAVKAVGGKVENREALIAAIKTANFKSVRGGFRFAANHFPIQNQYA 358

Query: 61  RVVTKGADGKYVNNMTQTLLPDHVDAYVGQCKMP 94
           RVVTKGADGKYVNNMTQT+L DHVDAYVGQCKMP
Sbjct: 359 RVVTKGADGKYVNNMTQTVLTDHVDAYVGQCKMP 392


>emb|CAM78191.1| ABC transporter substrate binding protein [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 390

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/93 (53%), Positives = 67/93 (72%)

Query: 1   MFASQAYDAAMLIDSAVKAIGGKVENREALIAAIKAANFKSVRGGFKFAANHFPIQNQYA 60
           ++ASQAYDAAMLIDSA++  GGK++++ AL  A+ AA+FKSVRG FKF  NHFPIQ+ + 
Sbjct: 298 VYASQAYDAAMLIDSAIRKTGGKLDDKAALGKALMAADFKSVRGNFKFNKNHFPIQDFFL 357

Query: 61  RVVTKGADGKYVNNMTQTLLPDHVDAYVGQCKM 93
           R V K + G+Y+N     +  D  DAY G+C M
Sbjct: 358 REVVKDSKGRYLNKKIAPIFQDRGDAYAGECSM 390


>ref|YP_002942559.1| extracellular ligand-binding receptor [Variovorax paradoxus S110]
 gb|ACS17293.1| Extracellular ligand-binding receptor [Variovorax paradoxus S110]
          Length = 390

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/94 (52%), Positives = 62/94 (65%)

Query: 1   MFASQAYDAAMLIDSAVKAIGGKVENREALIAAIKAANFKSVRGGFKFAANHFPIQNQYA 60
           M A+QAYD A+LID AV+ + GKV NR+AL  A++ A F S+RG FKF  N FPI   Y 
Sbjct: 297 MTAAQAYDTALLIDHAVRRVDGKVANRDALRKALREAQFPSLRGPFKFNNNQFPIHTLYL 356

Query: 61  RVVTKGADGKYVNNMTQTLLPDHVDAYVGQCKMP 94
           RVV K A G+  N +   +LP+H D Y  QCK+P
Sbjct: 357 RVVQKDASGRIANKLVGEILPNHADPYAAQCKLP 390


>ref|YP_002942568.1| extracellular ligand-binding receptor [Variovorax paradoxus S110]
 gb|ACS17302.1| Extracellular ligand-binding receptor [Variovorax paradoxus S110]
          Length = 389

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/93 (52%), Positives = 62/93 (66%)

Query: 1   MFASQAYDAAMLIDSAVKAIGGKVENREALIAAIKAANFKSVRGGFKFAANHFPIQNQYA 60
           M ASQ YD A+LID+AV+  GGKV +REAL  A++ A F+S+RG F+F  N FPI   Y 
Sbjct: 297 MNASQGYDTALLIDNAVRKTGGKVRDREALRQALRKAEFQSLRGPFRFNTNQFPIHTLYL 356

Query: 61  RVVTKGADGKYVNNMTQTLLPDHVDAYVGQCKM 93
           RVV K A GK  N +   LLP+H D Y  +CK+
Sbjct: 357 RVVQKDASGKIANKLVGELLPNHADPYAAECKL 389


>ref|YP_287239.1| extracellular ligand-binding receptor [Dechloromonas aromatica RCB]
 gb|AAZ48769.1| amino acid/amide ABC transporter substrate-binding protein, HAAT
           family [Dechloromonas aromatica RCB]
          Length = 388

 Score =  101 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 47/93 (50%), Positives = 65/93 (69%)

Query: 1   MFASQAYDAAMLIDSAVKAIGGKVENREALIAAIKAANFKSVRGGFKFAANHFPIQNQYA 60
           ++ASQ YDAA+++D+AV+ + GKVE++ AL  A++A  FKSVRG FKF  NH+P+QN Y 
Sbjct: 295 LYASQGYDAALMMDAAVRDVKGKVEDKAALQKALEAKRFKSVRGDFKFNTNHYPVQNYYL 354

Query: 61  RVVTKGADGKYVNNMTQTLLPDHVDAYVGQCKM 93
           R + K A G+  N    T+  +H DAYV  CKM
Sbjct: 355 RAIGKDAQGRVTNKTMGTIFTNHADAYVASCKM 387