BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4555.p (287 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777046.1| amino acid ABC transporter permease [Herbasp... 402 e-110 ref|YP_551893.1| inner-membrane translocator [Polaromonas sp. JS... 275 4e-72 dbj|BAC65300.1| membrane spanning protein [Pseudomonas fluorescens] 265 6e-69 ref|YP_996761.1| inner-membrane translocator [Verminephrobacter ... 258 5e-67 ref|YP_971510.1| inner-membrane translocator [Acidovorax citrull... 256 2e-66 >ref|YP_003777046.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65138.1| ABC-type amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 281/287 (97%), Positives = 284/287 (98%) Query: 1 MLFLIASGLTLIFGVMNFVNLAHGSFFMIGAYVAAVVAGASGSFWLGLLVALPATAALGF 60 MLFLIASGLTLIFGVMNFVNLAHGSFFMIGAYVAAVVAGASGSFWLGLLVALPATAALGF Sbjct: 18 MLFLIASGLTLIFGVMNFVNLAHGSFFMIGAYVAAVVAGASGSFWLGLLVALPATAALGF 77 Query: 61 LLEWLVFRRLYKKDHMVHVLATFAFILIFNDGVRMIWGPQPLPLNMPPAFAGPVNLFGLP 120 LLEW+VFRRLY+KDHMV VLATFAFILIFNDGVRMIWGPQPLPLNMP AFAGPVNLFGLP Sbjct: 78 LLEWVVFRRLYQKDHMVQVLATFAFILIFNDGVRMIWGPQPLPLNMPAAFAGPVNLFGLP 137 Query: 121 YSSYRLLVMAVGVVVAVALYLLINRTRIGMWVRAGANNLEMVTAMGINIRLLFRLVFSFG 180 YSSYRLLVMAVGVVVA+ALY LINRTRIGMWVRAGANNLEMVTAMGINIRLLFRLVFSFG Sbjct: 138 YSSYRLLVMAVGVVVAIALYFLINRTRIGMWVRAGANNLEMVTAMGINIRLLFRLVFSFG 197 Query: 181 LLLAALAGIMLGPLVAVQAGMGDDVLILAFVVVVIGGIGSVPGAAIGALIVGVVDTLGRS 240 LLLAALAGIMLGPLVAVQAGMGDDVLILAFVVVVIGGIGSVPGAAIGALIVGVVDTLGRS Sbjct: 198 LLLAALAGIMLGPLVAVQAGMGDDVLILAFVVVVIGGIGSVPGAAIGALIVGVVDTLGRS 257 Query: 241 LLPQLFALFLSADAAASVGPALGSMMIYLVMIAVLFWRPSGLFPART 287 LLPQLFALFLSADAAASVGPALGSMMIYLVMIAVLFWRPSGLFPART Sbjct: 258 LLPQLFALFLSADAAASVGPALGSMMIYLVMIAVLFWRPSGLFPART 304 >ref|YP_551893.1| inner-membrane translocator [Polaromonas sp. JS666] gb|ABE46995.1| inner-membrane translocator [Polaromonas sp. JS666] Length = 305 Score = 275 bits (704), Expect = 4e-72, Method: Composition-based stats. Identities = 173/287 (60%), Positives = 224/287 (78%), Gaps = 1/287 (0%) Query: 1 MLFLIASGLTLIFGVMNFVNLAHGSFFMIGAYVAAVVAGASGSFWLGLLVALPATAALGF 60 MLFL+A+GLTL+FG+M+ +NLAHGS +M+GA++ A V ASGS+ +G+L AL TA G Sbjct: 18 MLFLLAAGLTLVFGIMDMINLAHGSLYMVGAFLTAAVTQASGSYTVGVLSALAGTAVFGM 77 Query: 61 LLEWLVFRRLYKKDHMVHVLATFAFILIFNDGVRMIWGPQPLPLNMPPAFAGPVNLF-GL 119 LLE + RRLY++DH+ VLATFA ILI N+GVRMIWG P+ LN P A + P+ L GL Sbjct: 78 LLEVSLLRRLYRRDHLSQVLATFALILICNEGVRMIWGASPIKLNAPEALSRPIELVPGL 137 Query: 120 PYSSYRLLVMAVGVVVAVALYLLINRTRIGMWVRAGANNLEMVTAMGINIRLLFRLVFSF 179 Y ++RLL++ VG+VVA+ LY+L+ +TR+GMWVRAGA+N EM TAMG+NI+ LF VF F Sbjct: 138 FYPAHRLLIIVVGIVVAIGLYILVAKTRVGMWVRAGASNREMATAMGVNIQWLFTFVFGF 197 Query: 180 GLLLAALAGIMLGPLVAVQAGMGDDVLILAFVVVVIGGIGSVPGAAIGALIVGVVDTLGR 239 G L ALAG ML PL+AVQ GMG+ +LILAFVVVVIGGIGS+ GA +GAL++G VDTL R Sbjct: 198 GAALCALAGSMLSPLMAVQVGMGESILILAFVVVVIGGIGSIRGAFVGALLIGTVDTLSR 257 Query: 240 SLLPQLFALFLSADAAASVGPALGSMMIYLVMIAVLFWRPSGLFPAR 286 +L+P L FLS +++GPAL S++IY++M AVLFW+P GLFPAR Sbjct: 258 TLIPTLLGQFLSPSTTSALGPALASIIIYVLMAAVLFWKPQGLFPAR 304 >dbj|BAC65300.1| membrane spanning protein [Pseudomonas fluorescens] Length = 305 Score = 265 bits (677), Expect = 6e-69, Method: Composition-based stats. Identities = 175/287 (60%), Positives = 228/287 (79%), Gaps = 1/287 (0%) Query: 1 MLFLIASGLTLIFGVMNFVNLAHGSFFMIGAYVAAVVAGASGSFWLGLLVALPATAALGF 60 MLFL+A+GLTL+FG+M+ +NLAHGS +MIGAY+ A VA ASGS+++G+ VAL TA +G Sbjct: 18 MLFLLAAGLTLVFGIMDMINLAHGSLYMIGAYLTATVAEASGSYFIGIPVALVGTAIIGM 77 Query: 61 LLEWLVFRRLYKKDHMVHVLATFAFILIFNDGVRMIWGPQPLPLNMPPAFAGPVNLF-GL 119 +LE +FRRLY++DH+ VLATFA ILI N+ VRMIWG QP+PL+ P F+ P+ L GL Sbjct: 78 VLEISLFRRLYRRDHLSQVLATFALILICNEAVRMIWGVQPIPLSTPAVFSRPIELIPGL 137 Query: 120 PYSSYRLLVMAVGVVVAVALYLLINRTRIGMWVRAGANNLEMVTAMGINIRLLFRLVFSF 179 YS+ RL+++ VG+VVA+++Y L+ +TR+GMWVRAGA+N EM T MG+NI+ LF +VF Sbjct: 138 HYSAQRLMIIGVGLVVAISMYFLVAKTRLGMWVRAGASNREMATTMGVNIKWLFTVVFGV 197 Query: 180 GLLLAALAGIMLGPLVAVQAGMGDDVLILAFVVVVIGGIGSVPGAAIGALIVGVVDTLGR 239 G L ALAG MLGPL+AVQ GMG+ +LILAFVVVVIGGIGS+ GA +GAL++G VDTL R Sbjct: 198 GAALCALAGAMLGPLLAVQVGMGESILILAFVVVVIGGIGSIRGAFVGALLIGAVDTLSR 257 Query: 240 SLLPQLFALFLSADAAASVGPALGSMMIYLVMIAVLFWRPSGLFPAR 286 SLLP L FLS +S+G A+ S++IY++M AVLFW+P GLFPAR Sbjct: 258 SLLPLLLGKFLSPSVTSSIGAAVASIIIYVLMAAVLFWKPQGLFPAR 304 >ref|YP_996761.1| inner-membrane translocator [Verminephrobacter eiseniae EF01-2] gb|ABM57743.1| inner-membrane translocator [Verminephrobacter eiseniae EF01-2] Length = 306 Score = 258 bits (660), Expect = 5e-67, Method: Composition-based stats. Identities = 166/287 (57%), Positives = 218/287 (75%), Gaps = 1/287 (0%) Query: 1 MLFLIASGLTLIFGVMNFVNLAHGSFFMIGAYVAAVVAGASGSFWLGLLVALPATAALGF 60 MLFL+A+GLTL+FG+M+ VNLAHGS +M GAY AA GSFW GLL+++ ATAA+G Sbjct: 19 MLFLLAAGLTLVFGIMDVVNLAHGSLYMAGAYFAATFTSLCGSFWAGLLLSVAATAAVGV 78 Query: 61 LLEWLVFRRLYKKDHMVHVLATFAFILIFNDGVRMIWGPQPLPLNMPPAFAGPVNLF-GL 119 LLE VFRRLY++ H+ +LATFA ILIFN+ RMIWG Q L LN PP F+ PV L G Sbjct: 79 LLEMAVFRRLYQRSHLSQLLATFALILIFNELARMIWGAQALTLNTPPVFSRPVELLPGF 138 Query: 120 PYSSYRLLVMAVGVVVAVALYLLINRTRIGMWVRAGANNLEMVTAMGINIRLLFRLVFSF 179 YSS+RL ++ G+ VA +YL++ +TR+GM VRAGA++ EM MGI+I +F L+F+F Sbjct: 139 SYSSFRLFIIGTGLAVAALMYLIVVKTRLGMLVRAGASDREMAITMGIDIARVFTLLFAF 198 Query: 180 GLLLAALAGIMLGPLVAVQAGMGDDVLILAFVVVVIGGIGSVPGAAIGALIVGVVDTLGR 239 G L ALAG +LG ++ VQ GMG+ +LILAFVV+VIGG+GS+ GA +GAL+VG+VDTL R Sbjct: 199 GAALCALAGTLLGAILEVQVGMGESILILAFVVIVIGGVGSIRGALVGALLVGMVDTLSR 258 Query: 240 SLLPQLFALFLSADAAASVGPALGSMMIYLVMIAVLFWRPSGLFPAR 286 SLLP ++ +AAA VGP+L S++IY++M AVLF++P GLFPAR Sbjct: 259 SLLPAALRAIMAPEAAAGVGPSLASILIYVLMAAVLFFKPRGLFPAR 305 >ref|YP_971510.1| inner-membrane translocator [Acidovorax citrulli AAC00-1] gb|ABM33736.1| amino acid/amide ABC transporter membrane protein 1, HAAT family [Acidovorax citrulli AAC00-1] Length = 306 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 172/286 (60%), Positives = 221/286 (77%), Gaps = 1/286 (0%) Query: 1 MLFLIASGLTLIFGVMNFVNLAHGSFFMIGAYVAAVVAGASGSFWLGLLVALPATAALGF 60 MLFL+A+GLTL+FG+M+ +NLAHGS +M+GAY+ A +A ASGSFW+GL ATAA+G Sbjct: 19 MLFLLAAGLTLVFGIMDMINLAHGSLYMVGAYLIAAIATASGSFWIGLAGGTLATAAIGV 78 Query: 61 LLEWLVFRRLYKKDHMVHVLATFAFILIFNDGVRMIWGPQPLPLNMPPAFAGPVNLF-GL 119 LLE V RRLY++DH+ VL TFA +L+ N+ VRM+WG QP+PLN PPA AGPV L G Sbjct: 79 LLEVSVLRRLYRRDHLSQVLGTFAILLMANEAVRMVWGSQPVPLNPPPALAGPVELLPGF 138 Query: 120 PYSSYRLLVMAVGVVVAVALYLLINRTRIGMWVRAGANNLEMVTAMGINIRLLFRLVFSF 179 Y +YRL ++ VG+ VA+ LYLL+ RTR+GM VRAGA+N EM AMG N+R LF +F+ Sbjct: 139 HYPAYRLFIIGVGLAVALLLYLLVTRTRVGMQVRAGASNREMAMAMGTNVRRLFTGIFAL 198 Query: 180 GLLLAALAGIMLGPLVAVQAGMGDDVLILAFVVVVIGGIGSVPGAAIGALIVGVVDTLGR 239 G L A+AG MLGPL+AVQ GMG+ +LILAFVV+VIGGIGS+ GA +GAL+VG+VDT GR Sbjct: 199 GAALCAIAGGMLGPLLAVQVGMGESILILAFVVIVIGGIGSIRGALVGALLVGIVDTAGR 258 Query: 240 SLLPQLFALFLSADAAASVGPALGSMMIYLVMIAVLFWRPSGLFPA 285 +L+P L L AAA GPA+ S++IY++M AVLFW+P GLFP+ Sbjct: 259 TLVPLLAERLLGPAAAAGAGPAVASILIYVLMAAVLFWKPRGLFPS 304