BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4554.p (317 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777045.1| amino acid ABC transporter permease [Herbasp... 434 e-120 ref|YP_996760.1| inner-membrane translocator [Verminephrobacter ... 254 2e-65 ref|YP_999324.1| inner-membrane translocator [Verminephrobacter ... 236 5e-60 ref|YP_002942293.1| inner-membrane translocator [Variovorax para... 228 1e-57 ref|YP_787526.1| ABC transporter permease [Bordetella avium 197N... 224 1e-56 >ref|YP_003777045.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65137.1| ABC-type amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 317 Score = 434 bits (1117), Expect = e-120, Method: Composition-based stats. Identities = 307/317 (96%), Positives = 313/317 (98%) Query: 1 MQRLFVPLLLVLAVLLPLLAQASGMEYYIGVVTRILIFAMVAASLNFILGYGGMVSFGHA 60 MQRLF+PLLLVLA+LLPLLAQASGMEYYIGV+TRILIFAMVAASLNFILGYGGMVSFGHA Sbjct: 1 MQRLFIPLLLVLALLLPLLAQASGMEYYIGVLTRILIFAMVAASLNFILGYGGMVSFGHA 60 Query: 61 VFFGLGAYVTAIASFHGVTSAWLIWLLAALVTGLVGLVIGVIALRTRAVYFIMITMALAQ 120 VFFGLGAYVTAIASFHGVTSAWLIWLLAALVT LVGLVIGVIALRTRAVYFIMITMALAQ Sbjct: 61 VFFGLGAYVTAIASFHGVTSAWLIWLLAALVTALVGLVIGVIALRTRAVYFIMITMALAQ 120 Query: 121 LFYYFFVGFRYYGGDDGLQVTARPLLGFGLDMSGDNAFYWVVLAWLVASFVLLQRLLASR 180 LFYYFFVGFRYYGGDDGLQVTARPLLGFGLDMSGDNAFYWVVLAWL ASF+LLQRLLASR Sbjct: 121 LFYYFFVGFRYYGGDDGLQVTARPLLGFGLDMSGDNAFYWVVLAWLAASFILLQRLLASR 180 Query: 181 FGLALNAIRQNERRAQAIGYPALRYKLAAFVIAAVIAGLAGSLIGMSNLFASPKLLHWSQ 240 FGLALNAIRQNERRAQAIGYPALRYKLAAFVIAAVIAG+AGSLIGMSNLFASPKLLHWSQ Sbjct: 181 FGLALNAIRQNERRAQAIGYPALRYKLAAFVIAAVIAGIAGSLIGMSNLFASPKLLHWSQ 240 Query: 241 SGILLVMVALGGVGYFYGGLFGAAAFLLLEEVLSTHFEYWQIYVGLILLLVVMVAPRGVS 300 SGILLVMVALGGVGYFYGGL GAAAFLLLEEVLSTHFEYWQIYVGLILLLVVMVAPRGVS Sbjct: 241 SGILLVMVALGGVGYFYGGLLGAAAFLLLEEVLSTHFEYWQIYVGLILLLVVMVAPRGVS 300 Query: 301 SLATIGKTLKQGEQHGA 317 SL +IGKTLKQGEQHGA Sbjct: 301 SLVSIGKTLKQGEQHGA 317 >ref|YP_996760.1| inner-membrane translocator [Verminephrobacter eiseniae EF01-2] gb|ABM57742.1| inner-membrane translocator [Verminephrobacter eiseniae EF01-2] Length = 315 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 154/283 (54%), Positives = 200/283 (70%), Gaps = 2/283 (0%) Query: 19 LAQASGMEYYIGVVTRILIFAMVAASLNFILGYGGMVSFGHAVFFGLGAYVTAIASFHGV 78 +AQA G EYYIGVV+R+LIFA+ A+SLN ILG+GGMVS GHA +FG GAY I +GV Sbjct: 27 VAQAFGQEYYIGVVSRMLIFALAASSLNLILGFGGMVSLGHAAYFGAGAYTVGILMQNGV 86 Query: 79 TSAWLIWLLAALVTGLVGLVIGVIALRTRAVYFIMITMALAQLFYYFFVGFRYYGGDDGL 138 S WL W LA LV L+ ++G+I+LRT+ VYFIMIT+A AQ+ YY +G GGD+ + Sbjct: 87 LSGWLSWPLAMLVGALLACLVGLISLRTKGVYFIMITLAFAQMIYYIVIGLEVKGGDESI 146 Query: 139 QVTARPLLGFGLDMSGDNAFYWVVLAWLVASFVLLQRLLASRFGLALNAIRQNERRAQAI 198 ++ R GL++S D F++VVL + +L+ RL+ SRFG L AIR+NE R +AI Sbjct: 147 RLPQRS--SIGLNLSSDTTFHYVVLVLVSIFLLLIHRLINSRFGRVLQAIRENETRMEAI 204 Query: 199 GYPALRYKLAAFVIAAVIAGLAGSLIGMSNLFASPKLLHWSQSGILLVMVALGGVGYFYG 258 GYP LRYKL FVIA +A AG+L+ N F SP LLHW+QSG LLVMV LGG GYF G Sbjct: 205 GYPVLRYKLVCFVIAGALASFAGALLANQNQFVSPGLLHWTQSGSLLVMVILGGAGYFSG 264 Query: 259 GLFGAAAFLLLEEVLSTHFEYWQIYVGLILLLVVMVAPRGVSS 301 G+ GA A L+LEE+LS + +WQ+ +G ILL VV++ P G++S Sbjct: 265 GIIGAIAVLMLEEILSAYTIHWQLILGAILLGVVLLLPNGLAS 307 >ref|YP_999324.1| inner-membrane translocator [Verminephrobacter eiseniae EF01-2] gb|ABM60306.1| inner-membrane translocator [Verminephrobacter eiseniae EF01-2] Length = 316 Score = 236 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 144/260 (55%), Positives = 184/260 (70%), Gaps = 2/260 (0%) Query: 24 GMEYYIGVVTRILIFAMVAASLNFILGYGGMVSFGHAVFFGLGAYVTAIASFHGVTSAWL 83 G E+Y+G++TR+LI+A+ A SLN +LGYGGMVSFGHA F G+G YV AIA+ HGV SAW+ Sbjct: 26 GQEFYLGLLTRVLIYALAATSLNLLLGYGGMVSFGHAAFLGIGGYVVAIAAQHGVGSAWV 85 Query: 84 IWLLAALVTGLVGLVIGVIALRTRAVYFIMITMALAQLFYYFFVGFRYYGGDDGLQVTAR 143 W LA + L+G V+G I+LRTR V+F+MIT+ALAQ+FYY FV R YGGDDGL + R Sbjct: 86 AWPLALAIVALLGAVMGAISLRTRGVHFLMITLALAQMFYYVFVSLRSYGGDDGLSMARR 145 Query: 144 PLLGFGL--DMSGDNAFYWVVLAWLVASFVLLQRLLASRFGLALNAIRQNERRAQAIGYP 201 G+ GD FY++ L L + ++L RL+ SRFG L +R+NE R IG+P Sbjct: 146 SSFGWEAWWPTGGDMGFYYLALVLLALALLVLHRLIPSRFGSVLIGVRENETRMSTIGFP 205 Query: 202 ALRYKLAAFVIAAVIAGLAGSLIGMSNLFASPKLLHWSQSGILLVMVALGGVGYFYGGLF 261 RYKL AFVIAAV+ GLAG L N F SP ++HWSQSG+L+VMV +GG+G + G+ Sbjct: 206 VYRYKLVAFVIAAVLCGLAGVLNVELNRFISPSVMHWSQSGMLMVMVIIGGLGRPWAGVV 265 Query: 262 GAAAFLLLEEVLSTHFEYWQ 281 GAA FL LEEVLS + E WQ Sbjct: 266 GAAVFLGLEEVLSHYTERWQ 285 >ref|YP_002942293.1| inner-membrane translocator [Variovorax paradoxus S110] gb|ACS17027.1| inner-membrane translocator [Variovorax paradoxus S110] Length = 327 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 151/287 (52%), Positives = 198/287 (68%) Query: 16 LPLLAQASGMEYYIGVVTRILIFAMVAASLNFILGYGGMVSFGHAVFFGLGAYVTAIASF 75 PL+A G+E+YIG V R+L+ A+ AASLNFILG+GGMV+ GHA F G+GAY S Sbjct: 21 FPLVAPLFGLEFYIGFVRRVLVVALAAASLNFILGFGGMVALGHAGFIGMGAYTVVALSD 80 Query: 76 HGVTSAWLIWLLAALVTGLVGLVIGVIALRTRAVYFIMITMALAQLFYYFFVGFRYYGGD 135 GV SAW++W LAALV GLV +IG +ALRTR VYFIM T+A+AQ+ Y+ V R YGGD Sbjct: 81 AGVVSAWVMWPLAALVAGLVAALIGTVALRTRGVYFIMTTLAVAQMLYFVVVSLRRYGGD 140 Query: 136 DGLQVTARPLLGFGLDMSGDNAFYWVVLAWLVASFVLLQRLLASRFGLALNAIRQNERRA 195 DG + +RP L GLD+ ++ FYWVVLA + + L R SRFG AL IR NE R Sbjct: 141 DGYTLMSRPTLLPGLDLGNESNFYWVVLAIVALALWWLHRATQSRFGHALMGIRDNETRM 200 Query: 196 QAIGYPALRYKLAAFVIAAVIAGLAGSLIGMSNLFASPKLLHWSQSGILLVMVALGGVGY 255 +A+GYP + +L AF IA IAGLAG+L+ N F SP +HW+QS LLVMV +GG+G Sbjct: 201 RALGYPVFKLQLVAFAIAGAIAGLAGALLAGGNGFVSPATMHWTQSATLLVMVVIGGLGR 260 Query: 256 FYGGLFGAAAFLLLEEVLSTHFEYWQIYVGLILLLVVMVAPRGVSSL 302 +GG GA +L+LEE L H E+W + +GL+L+ V + AP+G+++L Sbjct: 261 SWGGPVGAVVWLVLEEALKQHTEHWHMPLGLLLIAVALWAPKGLAAL 307 >ref|YP_787526.1| ABC transporter permease [Bordetella avium 197N] emb|CAJ50641.1| ABC-transporter, permease protein [Bordetella avium 197N] Length = 317 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 149/289 (51%), Positives = 197/289 (68%), Gaps = 1/289 (0%) Query: 16 LPLLAQASGMEYYIGVVTRILIFAMVAASLNFILGYGGMVSFGHAVFFGLGAYVTAIASF 75 PL A A G+++YI V R+LI+A+ A SLN +LGYGGMV+ GHA FFG GAY I + Sbjct: 18 FPLFAPAMGLDFYISFVRRVLIYALAATSLNLVLGYGGMVALGHAAFFGAGAYTVGILAS 77 Query: 76 HGVTSAWLIWLLAALVTGLVGLVIGVIALRTRAVYFIMITMALAQLFYYFFVGFRYYGGD 135 GVTS +W A L+ G++ VIG I+LRTR VYFIMIT+A AQ+ Y+ F+ R YGG+ Sbjct: 78 GGVTSVLAVWPAAVLLAGVLAWVIGAISLRTRGVYFIMITLAFAQMVYFIFISLRQYGGE 137 Query: 136 DGLQVTARPLLGFGLDMSGDNAFYWVVLAWLVASFVLLQRLLASRFGLALNAIRQNERRA 195 DGL + L GLD+ D FY+VVLA V + RL+ASR+G AL +R+NE R Sbjct: 138 DGLNLPGYSTLP-GLDLGNDVTFYYVVLAVFVVVMYVFNRLVASRYGEALQGVRENESRM 196 Query: 196 QAIGYPALRYKLAAFVIAAVIAGLAGSLIGMSNLFASPKLLHWSQSGILLVMVALGGVGY 255 +A+GYP R KL AFV++ AGLAG+L+ NLF SP L+HW+QS LL+MV +GG+G Sbjct: 197 EALGYPVYRIKLTAFVLSGAAAGLAGALLANHNLFISPSLMHWTQSANLLIMVLVGGIGL 256 Query: 256 FYGGLFGAAAFLLLEEVLSTHFEYWQIYVGLILLLVVMVAPRGVSSLAT 304 YGG+ GA+ LLLEE+L EYW + +GL+LL +V APRG++ L + Sbjct: 257 RYGGVVGASVMLLLEELLRQWTEYWHLPLGLLLLALVFGAPRGLAGLVS 305