BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4550.p (206 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777041.1| riboflavin synthase subunit alpha [Herbaspir... 362 2e-98 ref|ZP_02904725.1| riboflavin synthase, alpha subunit [Burkholde... 285 3e-75 ref|YP_772713.1| riboflavin synthase subunit alpha [Burkholderia... 284 7e-75 ref|ZP_02893864.1| riboflavin synthase, alpha subunit [Burkholde... 283 8e-75 ref|YP_004754042.1| riboflavin synthase subunit alpha [Collimona... 283 9e-75 >ref|YP_003777041.1| riboflavin synthase subunit alpha [Herbaspirillum seropedicae SmR1] gb|ADJ65133.1| riboflavin synthase (alpha chain) protein [Herbaspirillum seropedicae SmR1] Length = 206 Score = 362 bits (929), Expect = 2e-98, Method: Composition-based stats. Identities = 200/206 (97%), Positives = 203/206 (98%) Query: 1 MFTGIVAAVGTITSVTPLAAGPDAGVRLTIDAGSLPMADVGLGDSIALNGACMTVVEKTA 60 MFTGIVAA+GTITSVTPLAAGPDAGVRLTIDAGSLPMADVGLGDSIALNGACMTVVEKTA Sbjct: 1 MFTGIVAAIGTITSVTPLAAGPDAGVRLTIDAGSLPMADVGLGDSIALNGACMTVVEKTA 60 Query: 61 SGFTVDVSRESLRLTAGLDAPGEVNLEKALTLAERLGGHLVSGHVDGLGQVHSFEPVGES 120 +GFTVDVSRESLRLTAGLDAPGEVNLEKALTLAERLGGHLVSGHVDGLGQVHSFEPVGES Sbjct: 61 NGFTVDVSRESLRLTAGLDAPGEVNLEKALTLAERLGGHLVSGHVDGLGQVHSFEPVGES 120 Query: 121 RELIVDAPKALGKYLAYKGSIVVNGVSLTVNRVEDLADACRFSINLIPHTVEVTTLKHLK 180 RELIVDAPKALGKYLAYKGSIVVNGVSLTVNRVEDLA+ACRFSINLIPHTVEVTT KHLK Sbjct: 121 RELIVDAPKALGKYLAYKGSIVVNGVSLTVNRVEDLAEACRFSINLIPHTVEVTTFKHLK 180 Query: 181 AGSKVNLEIDLIARYVERMLSSSTVS 206 AGSKVNLEIDLIARYVERMLSSS S Sbjct: 181 AGSKVNLEIDLIARYVERMLSSSQAS 206 >ref|ZP_02904725.1| riboflavin synthase, alpha subunit [Burkholderia ambifaria MEX-5] gb|EDT44064.1| riboflavin synthase, alpha subunit [Burkholderia ambifaria MEX-5] Length = 207 Score = 285 bits (728), Expect = 3e-75, Method: Composition-based stats. Identities = 153/203 (75%), Positives = 169/203 (83%) Query: 1 MFTGIVAAVGTITSVTPLAAGPDAGVRLTIDAGSLPMADVGLGDSIALNGACMTVVEKTA 60 MFTGIVAAVG I S+ PL A PDAGVRLT+ AG L +ADV LGDSIA+ GACMTV+EKT Sbjct: 1 MFTGIVAAVGRIESIDPLGAWPDAGVRLTVQAGGLDLADVALGDSIAIQGACMTVIEKTE 60 Query: 61 SGFTVDVSRESLRLTAGLDAPGEVNLEKALTLAERLGGHLVSGHVDGLGQVHSFEPVGES 120 +GF VDVSRESL T GL PGEVNLEKAL +RLGGH+VSGHVDGLG V F PVGES Sbjct: 61 TGFDVDVSRESLNRTVGLAQPGEVNLEKALRAHDRLGGHIVSGHVDGLGTVTRFAPVGES 120 Query: 121 RELIVDAPKALGKYLAYKGSIVVNGVSLTVNRVEDLADACRFSINLIPHTVEVTTLKHLK 180 EL + AP+ LG+YLAYKGSI VNGVSLTVN V+D AD C FSINLIPHTVEVTTL+H+K Sbjct: 121 HELRIVAPRELGRYLAYKGSITVNGVSLTVNTVDDRADGCEFSINLIPHTVEVTTLRHVK 180 Query: 181 AGSKVNLEIDLIARYVERMLSSS 203 AG KVNLEID+IARYVERMLS+S Sbjct: 181 AGDKVNLEIDMIARYVERMLSAS 203 >ref|YP_772713.1| riboflavin synthase subunit alpha [Burkholderia ambifaria AMMD] gb|ABI86379.1| riboflavin synthase, alpha subunit [Burkholderia ambifaria AMMD] Length = 209 Score = 284 bits (726), Expect = 7e-75, Method: Composition-based stats. Identities = 153/203 (75%), Positives = 169/203 (83%) Query: 1 MFTGIVAAVGTITSVTPLAAGPDAGVRLTIDAGSLPMADVGLGDSIALNGACMTVVEKTA 60 MFTGIVAAVG I S+ PL A PDAGVRLT+ AG L +ADV LGDSIA+ GACMTV+EKT Sbjct: 1 MFTGIVAAVGRIESINPLGASPDAGVRLTVHAGGLDLADVALGDSIAIQGACMTVIEKTE 60 Query: 61 SGFTVDVSRESLRLTAGLDAPGEVNLEKALTLAERLGGHLVSGHVDGLGQVHSFEPVGES 120 +GF VDVSRESL T GL PGEVNLEKAL +RLGGH+VSGHVDGLG V F PVGES Sbjct: 61 TGFDVDVSRESLNRTVGLAQPGEVNLEKALRAHDRLGGHIVSGHVDGLGTVTRFAPVGES 120 Query: 121 RELIVDAPKALGKYLAYKGSIVVNGVSLTVNRVEDLADACRFSINLIPHTVEVTTLKHLK 180 EL + AP+ LG+YLAYKGSI VNGVSLTVN V+D AD C FSINLIPHTVEVTTL+H+K Sbjct: 121 HELRIVAPRELGRYLAYKGSITVNGVSLTVNAVDDRADGCEFSINLIPHTVEVTTLRHVK 180 Query: 181 AGSKVNLEIDLIARYVERMLSSS 203 AG KVNLEID+IARYVERMLS+S Sbjct: 181 AGDKVNLEIDMIARYVERMLSAS 203 >ref|ZP_02893864.1| riboflavin synthase, alpha subunit [Burkholderia ambifaria IOP40-10] gb|EDT00560.1| riboflavin synthase, alpha subunit [Burkholderia ambifaria IOP40-10] Length = 209 Score = 283 bits (725), Expect = 8e-75, Method: Composition-based stats. Identities = 153/203 (75%), Positives = 169/203 (83%) Query: 1 MFTGIVAAVGTITSVTPLAAGPDAGVRLTIDAGSLPMADVGLGDSIALNGACMTVVEKTA 60 MFTGIVAAVG I S+ PL A PDAGVRLT+ AG L +ADV LGDSIA+ GACMTV+EKT Sbjct: 1 MFTGIVAAVGRIESINPLGASPDAGVRLTVHAGGLDLADVALGDSIAVQGACMTVIEKTE 60 Query: 61 SGFTVDVSRESLRLTAGLDAPGEVNLEKALTLAERLGGHLVSGHVDGLGQVHSFEPVGES 120 +GF VDVSRESL T GL PGEVNLEKAL +RLGGH+VSGHVDGLG V F PVGES Sbjct: 61 TGFDVDVSRESLNRTVGLAQPGEVNLEKALRAHDRLGGHIVSGHVDGLGTVTRFAPVGES 120 Query: 121 RELIVDAPKALGKYLAYKGSIVVNGVSLTVNRVEDLADACRFSINLIPHTVEVTTLKHLK 180 EL + AP+ LG+YLAYKGSI VNGVSLTVN V+D AD C FSINLIPHTVEVTTL+H+K Sbjct: 121 HELRIVAPRELGRYLAYKGSITVNGVSLTVNTVDDRADGCEFSINLIPHTVEVTTLRHVK 180 Query: 181 AGSKVNLEIDLIARYVERMLSSS 203 AG KVNLEID+IARYVERMLS+S Sbjct: 181 AGDKVNLEIDMIARYVERMLSAS 203 >ref|YP_004754042.1| riboflavin synthase subunit alpha [Collimonas fungivorans Ter331] gb|AEK63219.1| Riboflavin synthase alpha chain [Collimonas fungivorans Ter331] Length = 208 Score = 283 bits (725), Expect = 9e-75, Method: Composition-based stats. Identities = 153/201 (76%), Positives = 170/201 (84%) Query: 1 MFTGIVAAVGTITSVTPLAAGPDAGVRLTIDAGSLPMADVGLGDSIALNGACMTVVEKTA 60 MFTGIVAAVG ITSV PL + + GVRL ID G+L +ADV LGDSI+LNGACMTVVEK A Sbjct: 1 MFTGIVAAVGKITSVKPLGSSAEDGVRLKIDVGALSLADVALGDSISLNGACMTVVEKDA 60 Query: 61 SGFTVDVSRESLRLTAGLDAPGEVNLEKALTLAERLGGHLVSGHVDGLGQVHSFEPVGES 120 F VDVSRESL T GLDA GEVNLEKALTLA+RLGGHLVSGHVDGLG V FEPVGES Sbjct: 61 GSFEVDVSRESLNRTVGLDAAGEVNLEKALTLADRLGGHLVSGHVDGLGLVQKFEPVGES 120 Query: 121 RELIVDAPKALGKYLAYKGSIVVNGVSLTVNRVEDLADACRFSINLIPHTVEVTTLKHLK 180 EL++ A + L KY AYKGS+VVNGVSLTVNRV+D+AD C FSINLIPHT+EVT+LKHL+ Sbjct: 121 WELVIKAARDLAKYFAYKGSVVVNGVSLTVNRVDDVADGCLFSINLIPHTIEVTSLKHLQ 180 Query: 181 AGSKVNLEIDLIARYVERMLS 201 G +VNLE+DLIARYVERMLS Sbjct: 181 VGKQVNLEVDLIARYVERMLS 201