BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4548.p (215 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777039.1| type 4 fimbrial pilin related transmembrane ... 170 1e-40 ref|ZP_08273467.1| Type IV fimbrial biogenesis protein FimT [Oxa... 99 6e-19 ref|YP_001100625.1| putative type-4 fimbrial pilin related signa... 75 8e-12 ref|YP_004155811.1| type IV pilus assembly protein fimt [Variovo... 74 1e-11 ref|YP_003444948.1| fimbrial pilin related signal peptide protei... 67 1e-09 >ref|YP_003777039.1| type 4 fimbrial pilin related transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65131.1| type 4 fimbrial pilin related transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 157 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 96/154 (62%), Positives = 117/154 (75%) Query: 59 MRATGFSLIELMVVLLIAALVLAAGVPVLRDLSSEQQLATVGNDFFHGVQLTRSEALRAG 118 M A GF+LIELMVVLLI +L+LAAGVP L+ ++EQ+L N FFHGV L R++ALR Sbjct: 1 MDARGFTLIELMVVLLIVSLLLAAGVPALQQAAAEQRLVAAANQFFHGVSLARAQALRHA 60 Query: 119 RRAEMRPVEDDDWQTGWQISVGQQVLARHPPLAHGIAVAYTTGGELVAYQPDGQPVTRGS 178 RRAEMRP + W+ GWQI VGQ+VL R P L GI+VA+T GGE++ YQP+GQP+TRGS Sbjct: 61 RRAEMRPSDGLHWERGWQIEVGQRVLRREPALPAGISVAHTAGGEVLGYQPNGQPLTRGS 120 Query: 179 WYFSSGVNSRAVVINFLGRVRICNPVLDNQCSLA 212 W+FSS SR VVINFLGR R+CNP + QCS A Sbjct: 121 WHFSSDGRSRVVVINFLGRARVCNPARETQCSKA 154 >ref|ZP_08273467.1| Type IV fimbrial biogenesis protein FimT [Oxalobacteraceae bacterium IMCC9480] gb|EGF33054.1| Type IV fimbrial biogenesis protein FimT [Oxalobacteraceae bacterium IMCC9480] Length = 189 Score = 98.6 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 59/169 (34%), Positives = 90/169 (53%), Gaps = 21/169 (12%) Query: 62 TGFSLIELMVVLLIAALVLAAGVPVLRDLSSEQQLATVGNDFFHGVQLTRSEALRAGRRA 121 TG++LIELM VL I A+VLA VP L +L Q+++ D ++LTR+EALR G+R Sbjct: 20 TGYTLIELMTVLAILAIVLALAVPALAELIQRQKISAATADLLAAIRLTRAEALRRGQRV 79 Query: 122 EMRPVEDDDWQTGWQISV----------GQQVLARHPPLAHGIAVAYTT---GGELVAYQ 168 ++ P + +W +GW I + G+ +L H +A G+A+ +AY Sbjct: 80 DLVPADGVEWASGWMIFIDDNGNRRADAGETILHVHDAVAAGLAIKSAMTDRAAPYIAYA 139 Query: 169 PDGQPVTR--------GSWYFSSGVNSRAVVINFLGRVRICNPVLDNQC 209 +G+ T G S G R ++INFLGR R CNP++++ C Sbjct: 140 ANGRTRTNANSQTPQFGHLSLSLGAQQRRIIINFLGRARSCNPLVESAC 188 >ref|YP_001100625.1| putative type-4 fimbrial pilin related signal peptide protein [Herminiimonas arsenicoxydans] emb|CAL62504.1| putative Tfp pilus assembly protein FimT [Herminiimonas arsenicoxydans] Length = 167 Score = 74.7 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 49/141 (34%), Positives = 65/141 (46%), Gaps = 22/141 (15%) Query: 85 PVLRDLSSEQQLATVGNDFFHGVQLTRSEALRAGRRAEMRPVED-DDWQTGWQISVGQQV 143 P R ++ Q+L T N V L RSEA+ GRR ++ P D W GW I + + Sbjct: 20 PGFRTMTQNQRLTTAANALLMSVHLARSEAIHRGRRVDLVPAGDGTKWSKGWVIFIDEDN 79 Query: 144 LARHPP-----LAHG-------IAVAYTTGG-ELVAYQPDGQPVTR--------GSWYFS 182 R P +HG I ++T + +AY G+ T G+W Sbjct: 80 DQRPDPNETVIYSHGALNEDVRITPSFTDSKVQYIAYNGSGRTRTNANSQTSQAGNWLLE 139 Query: 183 SGVNSRAVVINFLGRVRICNP 203 SG SR VVINFLGR R+CNP Sbjct: 140 SGSQSRKVVINFLGRARVCNP 160 >ref|YP_004155811.1| type IV pilus assembly protein fimt [Variovorax paradoxus EPS] gb|ADU37700.1| putative type IV pilus assembly protein FimT [Variovorax paradoxus EPS] Length = 191 Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 21/172 (12%) Query: 63 GFSLIELMVVLLIAALVLAAGVPVLRDLSSEQQLATVGNDFFHGVQLTRSEALRAGRRAE 122 GF+LIELM ++ I A++ A GVP RD+ Q+LAT F + R EA++ + E Sbjct: 11 GFTLIELMAIVAIVAVLAAIGVPSFRDMLLNQRLATAAQGFNAALGFARMEAIQRAQGVE 70 Query: 123 MRPVEDDDWQTGWQISVGQ----------QVLARHPPLAHGIAVAYTTGGELV-AYQPDG 171 + + DW GW + G Q L R L G+++ T GG + DG Sbjct: 71 VAALAGGDWSEGWVVRTGSDASSSTQRQTQTLRRFDRLPQGVSIDTTLGGGFAQGLRYDG 130 Query: 172 QPVTR---------GSWYFSSGVNSRA-VVINFLGRVRICNPVLDNQCSLAA 213 +R G F + RA V+++ GR ++CNP + C A Sbjct: 131 NGFSRQTARAGFSAGCLTFKAETGRRASVIVSASGRAKVCNPDVSGDCGSGA 182 >ref|YP_003444948.1| fimbrial pilin related signal peptide protein [Allochromatium vinosum DSM 180] gb|ADC63916.1| fimbrial pilin related signal peptide protein [Allochromatium vinosum DSM 180] Length = 167 Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 22/159 (13%) Query: 60 RATGFSLIELMVVLLIAALVLAAGVPVLRDLSSEQQLATVGNDFFHGVQLTRSEALRAGR 119 R GF+L+ELMV + +A ++LA VP +D+ +LA NDF + TRSEA++ + Sbjct: 10 RQAGFTLLELMVTVAVATILLAIAVPSFQDVIRRNRLAAATNDFLASIYYTRSEAVKEDK 69 Query: 120 RAEMRPVED-----DDWQTGWQISVGQQ-----------VLARHPPLAHGIAVAYTTGGE 163 RA M + W GW + V VL R P GI++ G Sbjct: 70 RAIMCASSNGSTCTGSWADGWIVVVDSNQNDEVNETDKLVLVREAP-PSGISI---EGKT 125 Query: 164 LVAYQPDGQPVTRGSWYFSSGVN--SRAVVINFLGRVRI 200 +AY P G+ + G + G + ++ ++I+ GR R+ Sbjct: 126 KIAYMPSGRVASFGHGTITIGASGHTKKIIISTSGRPRV 164