BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4547.p (153 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777038.1| type-4 fimbrial pilin-related transmembrane ... 175 2e-42 ref|ZP_08273468.1| Type IV pilus biogenesis protein PilE [Oxalob... 116 1e-24 ref|YP_001354126.1| PilE type IV pilus assembly protein [Janthin... 114 7e-24 ref|YP_001100626.1| putative pilE protein [Herminiimonas arsenic... 99 3e-19 ref|YP_523911.1| methylation [Rhodoferax ferrireducens T118] >gi... 84 1e-14 >ref|YP_003777038.1| type-4 fimbrial pilin-related transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65130.1| type-4 fimbrial pilin-related transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 160 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 88/142 (61%), Positives = 105/142 (73%), Gaps = 4/142 (2%) Query: 16 GFTLLEILVSLAIVILLAGLGWNGYLHIVKKASRAEGRAAILHVLLQQERHYAYQHRYRP 75 GFTL E++ +L +V++LAGL W+ Y H V KA RAEGRAA+L VLLQQER +AYQ RY+ Sbjct: 19 GFTLTELMAALLVVMVLAGLSWSSYQHAVLKARRAEGRAALLQVLLQQERQFAYQQRYQA 78 Query: 76 FQPGSAAQG----FKWYSGATPQTSAYALSARACEDEDLASCVLVIATPGGSGVNAAYED 131 F+P G FKWYSG TPQTSAYALSARAC+ L SCVLV ATPGG GV+A + D Sbjct: 79 FEPAQGVPGESDDFKWYSGGTPQTSAYALSARACDGASLDSCVLVTATPGGPGVHAGFSD 138 Query: 132 AQCGVLQADNRGNRRADGKECW 153 + CG L AD+RG R ADG +CW Sbjct: 139 SACGRLHADSRGGRSADGPDCW 160 >ref|ZP_08273468.1| Type IV pilus biogenesis protein PilE [Oxalobacteraceae bacterium IMCC9480] gb|EGF33055.1| Type IV pilus biogenesis protein PilE [Oxalobacteraceae bacterium IMCC9480] Length = 150 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 63/141 (44%), Positives = 87/141 (61%), Gaps = 3/141 (2%) Query: 16 GFTLLEILVSLAIVILLAGLGWNGYLHIVKKASRAEGRAAILHVLLQQERHYAYQHRYRP 75 GFTL+E+LV++ IV LLA + Y V+K RAEGRAA+L ++ QQE+ Y+ + Y Sbjct: 10 GFTLIELLVTIVIVALLATIALPSYQFAVRKVKRAEGRAALLKLMQQQEQLYSQRMTYLA 69 Query: 76 FQPGSAA---QGFKWYSGATPQTSAYALSARACEDEDLASCVLVIATPGGSGVNAAYEDA 132 F S Q F W+S + SAY + A AC +A CVL+ A PG S VNA + D Sbjct: 70 FSSSSTTPDQQRFAWFSADSAAASAYEIDALACPGLRIAECVLLRARPGTSRVNAGFSDK 129 Query: 133 QCGVLQADNRGNRRADGKECW 153 QCG L+ D+ G++ ADG++CW Sbjct: 130 QCGTLRLDSLGHKDADGRDCW 150 >ref|YP_001354126.1| PilE type IV pilus assembly protein [Janthinobacterium sp. Marseille] gb|ABR89298.1| PilE type IV pilus assembly protein [Janthinobacterium sp. Marseille] Length = 134 Score = 114 bits (284), Expect = 7e-24, Method: Composition-based stats. Identities = 57/134 (42%), Positives = 83/134 (61%), Gaps = 3/134 (2%) Query: 23 LVSLAIVILLAGLGWNGYLHIVKKASRAEGRAAILHVLLQQERHYAYQHRYRPFQPGSA- 81 +V+L IV LLA L Y + V K+ RAEGRAA++ ++ QQER+Y+ Y PF S Sbjct: 1 MVALLIVALLATLAIPSYQNAVIKSKRAEGRAALMRLMQQQERYYSVHTTYLPFSATSGD 60 Query: 82 --AQGFKWYSGATPQTSAYALSARACEDEDLASCVLVIATPGGSGVNAAYEDAQCGVLQA 139 A+ F WYSG + Q+S+Y +SA AC+ + C+ ++A PG V+A+Y D CG L Sbjct: 61 EHARQFSWYSGTSEQSSSYEISAEACDSSGIRHCIRLMARPGTDRVDASYRDFMCGTLTL 120 Query: 140 DNRGNRRADGKECW 153 D+RG++ A +CW Sbjct: 121 DSRGDKSAAANDCW 134 >ref|YP_001100626.1| putative pilE protein [Herminiimonas arsenicoxydans] emb|CAL62505.1| putative type 4 fimbrial biogenesis protein PilE [Herminiimonas arsenicoxydans] Length = 149 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 58/143 (40%), Positives = 83/143 (58%), Gaps = 3/143 (2%) Query: 14 ANGFTLLEILVSLAIVILLAGLGWNGYLHIVKKASRAEGRAAILHVLLQQERHYAYQHRY 73 A+GFT++E++V L I +LA + Y V KA R+EGRAA++ + QQER+Y+ Y Sbjct: 6 AHGFTMIELMVVLIIAAILAAVAIPSYQESVLKARRSEGRAALMKGMQQQERYYSLHTTY 65 Query: 74 RPFQPGSA---AQGFKWYSGATPQTSAYALSARACEDEDLASCVLVIATPGGSGVNAAYE 130 F S A+ F W+SGA + S Y +SA+AC + + CV++IA PG VNA+Y Sbjct: 66 LAFSSASTDAEAKKFSWFSGANAKASFYEISAQACSGKTIRDCVVLIAQPGTGKVNASYR 125 Query: 131 DAQCGVLQADNRGNRRADGKECW 153 D CG L ++ G A CW Sbjct: 126 DPVCGALSLNSSGEESAGADRCW 148 >ref|YP_523911.1| methylation [Rhodoferax ferrireducens T118] gb|ABD70380.1| methylation [Rhodoferax ferrireducens T118] Length = 160 Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 52/149 (34%), Positives = 79/149 (53%), Gaps = 14/149 (9%) Query: 15 NGFTLLEILVSLAIVILLAGLGWNGYLHIVKKASRAEGRAAILHVLLQQERHYAYQHRYR 74 +GFTL+E+++++AI+ +LA L + Y V+K RAE RAA++++L QQER+ + Y Sbjct: 15 SGFTLIELMITVAIIGILAALAYPAYTDSVRKGKRAEARAALMNLLQQQERYLTQMNTYV 74 Query: 75 PFQPGSAAQGFKWYSGA--TPQTSAYALSARACED--EDLAS---CVLVIATPGGSGVNA 127 F G+A FK YS + T S++ L AR C+ D S C+ V A P Sbjct: 75 VFAAGAADTAFKTYSSSDGTSAQSSHLLGARKCQKIGSDTPSEKDCIEVFAVPQA----G 130 Query: 128 AYEDAQCGVLQADNRGNRRADGKE---CW 153 + D Q + D +G R G + CW Sbjct: 131 VFSDPQVTSMAIDTQGRRTCTGTQIDRCW 159