BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4546.p (240 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777037.1| Type IV pilus assembly protein [Herbaspirill... 128 7e-28 ref|ZP_08872941.1| putative transmembrane protein [Verminephroba... 77 3e-12 ref|ZP_08272565.1| Type IV fimbrial biogenesis protein PilX [Oxa... 76 4e-12 ref|YP_997580.1| hypothetical protein Veis_2824 [Verminephrobact... 69 9e-10 ref|YP_523909.1| hypothetical protein Rfer_2662 [Rhodoferax ferr... 63 4e-08 >ref|YP_003777037.1| Type IV pilus assembly protein [Herbaspirillum seropedicae SmR1] gb|ADJ65129.1| Type IV pilus assembly protein [Herbaspirillum seropedicae SmR1] Length = 152 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 81/155 (52%), Positives = 102/155 (65%), Gaps = 3/155 (1%) Query: 86 LAAQAALEDACDDLRYHRQIDPGQFTARRACRSDAAGAGLCVGQHDRAGWEPAQLHGPDA 145 +AAQAAL+DAC DLR R + CR D AGAG C+G+ R+ W+ AQLHG A Sbjct: 1 MAAQAALDDACLDLRQGRAPSKDAAAPQAGCRHDPAGAGWCLGRAHRSTWQSAQLHGAQA 60 Query: 146 LSATYGQFTGRRYRALPGVATPRYLIERLLPTVDKNKSYPDQPPTLRYRLSAVGYGRQGA 205 +SA YGQFTGRR+ ALPG++ PRYLIE+L T + D T YRL+A+GYGR GA Sbjct: 61 ISAQYGQFTGRRFPALPGISPPRYLIEQL--TDGAAATGADDTTTALYRLNAIGYGRDGA 118 Query: 206 AVALQAVLQLPPQGQALPSACPLRAWRPLYLPLTE 240 VALQA+++ P A P++C AWRPL+LP E Sbjct: 119 QVALQALVR-HPDPHAAPASCRTLAWRPLFLPDME 152 >ref|ZP_08872941.1| putative transmembrane protein [Verminephrobacter sp. At4] Length = 191 Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 32/194 (16%) Query: 46 TLMITLMLLSVILLLGAATTSLLLLEERGARNHRERAQARLAAQAALEDACDDLR----- 100 +L+I +++L V+ LLG A + ++ ERG RN R+ A AA+AAL DA D+ Sbjct: 2 SLIIVMLILIVVSLLGIAGARIAMMAERGTRNDRDLQIAWQAAEAALVDAEMDIEGQPAS 61 Query: 101 ---------YHRQIDPGQFTARRACRSDAAGAGLCV--GQHDRAGWEPAQLH--GPDALS 147 +D QF + C S GLC + + W G DA + Sbjct: 62 STNKRNAVFKQGDVDLSQFVS--GCGSTGTSIGLCSLNPKEENPAWLAVNFEKTGTDART 119 Query: 148 ATYGQFTGRRY----RALPGVATPRYLIERLLPTVDKNKSYPDQPPTLR--YRLSAVGYG 201 +G+FTGR + R + V PRY+IE P D+ + D P + YR++A+G+G Sbjct: 120 VEFGKFTGRNFPAGARGIQPVKPPRYVIE---PIPDEESTMIDTPAKKKFLYRITAMGFG 176 Query: 202 RQGAAVALQAVLQL 215 +G Q VLQ+ Sbjct: 177 PKGDT---QVVLQM 187 >ref|ZP_08272565.1| Type IV fimbrial biogenesis protein PilX [Oxalobacteraceae bacterium IMCC9480] gb|EGF33954.1| Type IV fimbrial biogenesis protein PilX [Oxalobacteraceae bacterium IMCC9480] Length = 195 Score = 75.9 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 60/172 (34%), Positives = 86/172 (50%), Gaps = 13/172 (7%) Query: 40 PRQRGATLMITLMLLSVILLLGAATTSLLLLEERGARNHRERAQARLAAQAALEDACDDL 99 PR++G+TL+I ++ L ++ LLG + + +ER ARN R+R A AA++AL DA DD+ Sbjct: 12 PREQGSTLLIGMLFLIILTLLGLSAALISKTDERMARNSRDRNIAFFAAESALRDARDDI 71 Query: 100 RYHRQIDPGQFTARRACRSDAAGAGLCV--GQHDRAGWEPAQLHGPDALSATYGQFT--- 154 G A C S A GLC+ D WE L P S YG+ T Sbjct: 72 HLPASRIQGATGALADC-SGATTKGLCLPAAAGDPQVWETTYLTDP-TRSVEYGEMTSLT 129 Query: 155 -GRRYRALPG----VATPRYLIERLLPTVDKNKSYPDQPPTLRYRLSAVGYG 201 ++++ P A PRYLIE LP ++ P YR++A+GYG Sbjct: 130 AAQKFKVAPASGGVTAPPRYLIEA-LPDINGVSLSAKVPQKWLYRITAIGYG 180 >ref|YP_997580.1| hypothetical protein Veis_2824 [Verminephrobacter eiseniae EF01-2] gb|ABM58562.1| putative transmembrane protein [Verminephrobacter eiseniae EF01-2] Length = 221 Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 60/204 (29%), Positives = 93/204 (45%), Gaps = 34/204 (16%) Query: 41 RQRGATLMITLMLLSVILLLGAATTSLLLLEERGARNHRERAQARLAAQAALEDACDDLR 100 RQRG +L+I +++L V+ +LG + ++ ERG RN R+ A AA+A L DA D+ Sbjct: 19 RQRGLSLIIVMLILIVVSILGVGGMRIAMMAERGTRNDRDMQIAWQAAEAGLVDAEFDIT 78 Query: 101 --------------YHRQIDPGQFTARRACRSDAAGAGLC-VGQHDRAGWEPAQLHGPD- 144 H ++D +F C S GLC + + W D Sbjct: 79 GQSANSTSNRSAVFKHNEVDLAKFIDN--CGSADQSIGLCTLKATGKPVWLTVDFEATDG 136 Query: 145 -ALSATYGQFTGRRYRALPG----VATPRYLIE--------RLLPTVDKNKSYPDQPPTL 191 A + +G++TGR + P PRYLIE R T ++N+ + + Sbjct: 137 NAKTVEFGKYTGRAFPTGPTGIRPAQKPRYLIEIIPDQHGTRSFRTTNQNELTGSETLSY 196 Query: 192 RYRLSAVGYGRQGAAVALQAVLQL 215 YR++A+G+G A QAVLQ+ Sbjct: 197 VYRVTAMGFGPNKEA---QAVLQM 217 >ref|YP_523909.1| hypothetical protein Rfer_2662 [Rhodoferax ferrireducens T118] gb|ABD70378.1| putative transmembrane protein [Rhodoferax ferrireducens T118] Length = 208 Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 66/215 (30%), Positives = 95/215 (44%), Gaps = 44/215 (20%) Query: 33 MKRPP----------CHPRQRGATLMITLMLLSVILLLGAATTSLLLLEERGARNHRERA 82 MK PP +QRG +L+ TL+LL V+ +LG + ++LL ER R R+ Sbjct: 1 MKYPPLAFFRSATVRVRSKQRGFSLITTLILLIVVTVLGIGASQMVLLSERATRFDRDTQ 60 Query: 83 QARLAAQAALEDACDDLRYHRQIDPGQFTARRACRSDA-------------AGAGLCVGQ 129 A AA+AAL DA D+R P T +R A A GLC+ Sbjct: 61 IAFQAAEAALIDAEFDIR-----GPNTSTTQRVASFSASSELGFMDGCGTGASLGLCLPA 115 Query: 130 HD--RAGWEPAQL--HGPDALSATYGQFTGRRYRA-----LPGVATPRYLIERLLPTVDK 180 D + W A + +G FTGR + P +A PRY+IE +LP DK Sbjct: 116 ADGQKPIWYSVDFTDESSSAKTVKFGDFTGRTFATGTSGIRPEIA-PRYIIE-VLP--DK 171 Query: 181 NKSYPDQPPTLRYRLSAVGYGRQGAAVALQAVLQL 215 +R++A+G+G + QAV+Q+ Sbjct: 172 TPGRSASAQKTLFRVTAMGFGPRKET---QAVVQM 203