BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4544.p (171 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777035.1| hypothetical protein Hsero_3649 [Herbaspiril... 152 2e-35 ref|YP_997578.1| type IV pilus modification protein PilV [Vermin... 72 4e-11 ref|ZP_03544724.1| type IV pilus modification protein PilV [Coma... 66 2e-09 ref|YP_971879.1| type IV pilus modification protein PilV [Acidov... 63 2e-08 ref|YP_003753240.1| type IV pilus assembly protein PilV [Ralston... 62 4e-08 >ref|YP_003777035.1| hypothetical protein Hsero_3649 [Herbaspirillum seropedicae SmR1] gb|ADJ65127.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 170 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 98/164 (59%), Positives = 123/164 (75%), Gaps = 3/164 (1%) Query: 7 GFSMMEVLVAMLVIGTGALAIAMLQLHALRSSQDSSLHARATLMAQELAELRAALPATAG 66 GFS++EVLVAMLV+GTGALA+ MLQLHALRSS DS+LHARATLMA ELAELRAAL G Sbjct: 9 GFSLIEVLVAMLVVGTGALAMVMLQLHALRSSHDSALHARATLMALELAELRAALAPAPG 68 Query: 67 VADPLLFSLAAGKPFTAHADCEQSACSPADFARASLADWSGRLVRDFPQARVIVCRDGPR 126 +ADP LF+ G+ +H C + CS ADFA A++ADWS RLVR FP ARV VCRDG + Sbjct: 69 MADPTLFAFDGGRAPGSHIACSNTPCSAADFASAAIADWSARLVRGFPGARVAVCRDGGQ 128 Query: 127 PPPEDWRCDGLESSPAVLKMAWHRPGSAKGTAAAAAPLVSLNLG 170 P + W CD ++P + +++W RPG+A +AAA P+++L LG Sbjct: 129 TPQQSWSCDHTPAAPVIFRLSWRRPGTA---SAAALPMLTLALG 169 >ref|YP_997578.1| type IV pilus modification protein PilV [Verminephrobacter eiseniae EF01-2] gb|ABM58560.1| type IV pilus modification protein PilV [Verminephrobacter eiseniae EF01-2] Length = 223 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 86/167 (51%), Gaps = 9/167 (5%) Query: 3 GRSRGFSMMEVLVAMLVIGTGALAIAMLQLHALRSSQDSSLHARATLMAQELAEL---RA 59 G S+GFS++EVLVA++++ L +Q +AL++++++ L A+A ++A ELAE+ Sbjct: 10 GPSKGFSLLEVLVAIVILTFAILGTVGMQGYALQANREARLQAQAVMLANELAEMMRGNN 69 Query: 60 ALPATAGVADPLLFSLAAGKPFTAHADCEQSACSPADFARASLADWSGRLVRDFPQARVI 119 A+ ++P + A+ A+ S + A+A + DW R+ D PQA+V Sbjct: 70 AIAVHPKDSNPYMQQDASNYCLRV-ANASTGCSSTTEVAQAQMTDWLARVHADLPQAKVK 128 Query: 120 VCRDGPRPPPED----WRCDGLESSPAVLKMAWHRPGSAKGTAAAAA 162 VC DG E W CD A +K+ W R + GT + A Sbjct: 129 VCFDGAPYDTESGLAKWDCDD-AGDIAYIKIGWTRRSTNTGTGSTVA 174 >ref|ZP_03544724.1| type IV pilus modification protein PilV [Comamonas testosteroni KF-1] gb|EED69010.1| type IV pilus modification protein PilV [Comamonas testosteroni KF-1] Length = 212 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 18/172 (10%) Query: 6 RGFSMMEVLVAMLVIGTGALAIAMLQLHALRSSQDSSLHARATLMAQELAEL----RAAL 61 RGF+++EVLVA++V G L + +Q A+++++++ L ++AT +A+ELAE+ + Sbjct: 21 RGFTLIEVLVAIIVFSFGLLGMVGMQAFAIQANREARLQSQATSLARELAEMMRGNKQVA 80 Query: 62 PATAGVADPLLFSLAAGK--PFTAH--ADCEQSACSPADFARASLADWSGRLVRDFPQAR 117 T +P L + A G P TA S S D A A + DW R+ P AR Sbjct: 81 VLTTTATNPYLGTFAVGSLTPSTASYCLSVGSSCSSTTDVASAQMTDWLTRVDATLPGAR 140 Query: 118 VIVCRDGPRPPPED------WRCDGLESSPAV-LKMAWHRPGSAKGTAAAAA 162 + VC DG P D W C ++ + +K+ W + + + A+ Sbjct: 141 ISVCLDG---APYDSNGLPQWSCTPSTANEIIFIKIGWTQSSTDRSKTGTAS 189 >ref|YP_971879.1| type IV pilus modification protein PilV [Acidovorax citrulli AAC00-1] gb|ABM34105.1| type IV pilus modification protein PilV [Acidovorax citrulli AAC00-1] Length = 225 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 58/179 (32%), Positives = 95/179 (53%), Gaps = 25/179 (13%) Query: 2 RGRSRGFSMMEVLVAMLVIGTGALAIAMLQLHALRSSQDSSLHARATLMAQELAEL---- 57 R R GF+++EVLV+++V+ G L + +Q AL+S++++ L A+A +A+E+ EL Sbjct: 22 RRRESGFTLVEVLVSIVVLSFGILGLVGVQAFALQSTREARLQAQAANLAREMTELMRGN 81 Query: 58 -RAALPATAGVADPLLFSLAAG-KPFTAH---ADCEQSACSPAD-FARASLADWSGRLVR 111 + A+ + A + +P L +L + P TA+ SAC+ ARA L DW RL Sbjct: 82 NQIAIKSDASL-NPYLINLQSPLSPATANYCLGVASSSACADGTAVARAELTDWLTRLDA 140 Query: 112 DFPQARVIVCRDGPRPPPED------WRCD----GLESSPAVLKMAWHRPGSAKGTAAA 160 P ARV++C D P D W C G++ AV+K+ W R + + +A + Sbjct: 141 ALPGARVVICFD---KAPYDSNGMPRWDCTPGAAGVDEV-AVVKIGWTRKSTLRASATS 195 >ref|YP_003753240.1| type IV pilus assembly protein PilV [Ralstonia solanacearum PSI07] emb|CBJ51977.1| putative Type IV pilus assembly protein PilV [Ralstonia solanacearum PSI07] Length = 205 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 18/176 (10%) Query: 3 GRSRGFSMMEVLVAMLVIGTGALAIAMLQLHALRSSQDSSLHARATLMAQELAELRAALP 62 G++ GF+M+E L+A+L++ G L++A L L + R +Q +S A L+A +A+ R + Sbjct: 7 GKALGFTMLEALIAVLIVAVGVLSVANLLLKSYRFTQQASYDAMGQLLAANMAD-RIRVN 65 Query: 63 ATAGVADPLLFSLAAGKPFTAHAD----------CEQSACSPADFARASLADWSGRLVRD 112 + +D +F +A + + SA + L +W+ + Sbjct: 66 SNQMASDAYVFDTDKASAVSAPTNFYLSGSSTGCMDTSAVCANNTVNFDLTEWTSAVKAS 125 Query: 113 FPQARVIVCRDGPRPPPE---DWRCDGLESSPAVLKMAW----HRPGSAKGTAAAA 161 P R ++C D P W C G + P V+K+ W R G AA+A Sbjct: 126 LPGGRGVICHDNPAYSSTGGFTWPCSGSANDPLVVKVGWVSRLSRADQGSGVAASA 181