BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4542.p         (101 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777033.1| hypothetical protein Hsero_3647 [Herbaspiril...   115   2e-24
ref|YP_001098910.1| putative RNA-binding protein [Herminiimonas ...    92   3e-17
ref|YP_001352249.1| hypothetical protein mma_0559 [Janthinobacte...    91   8e-17
ref|ZP_03270476.1| conserved hypothetical protein [Burkholderia ...    87   8e-16
ref|YP_003846538.1| putative RNA-binding protein [Gallionella ca...    86   3e-15

>ref|YP_003777033.1| hypothetical protein Hsero_3647 [Herbaspirillum seropedicae SmR1]
 gb|ADJ65125.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 73

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/72 (83%), Positives = 65/72 (90%)

Query: 25 MQKITFPLQGHPYVELNQLLKLCGLCDSGGAGKQLVADGQVKVDGKLETRKTCKITVGQT 84
          MQKITFPLQ HPYVELNQLLKLCGLCDSGGAGKQLVA+G V+VDGK E+RKTCKIT GQ 
Sbjct: 1  MQKITFPLQDHPYVELNQLLKLCGLCDSGGAGKQLVAEGHVRVDGKPESRKTCKITAGQK 60

Query: 85 VQLGDVRIRVLA 96
          V LGDV+I V+A
Sbjct: 61 VSLGDVQITVVA 72


>ref|YP_001098910.1| putative RNA-binding protein [Herminiimonas arsenicoxydans]
 emb|CAL60783.1| conserved hypothetical protein; putative RNA-binding protein
          [Herminiimonas arsenicoxydans]
          Length = 73

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/74 (67%), Positives = 57/74 (77%), Gaps = 1/74 (1%)

Query: 25 MQKITFPLQGHPYVELNQLLKLCGLCDSGGAGKQLVADGQVKVDGKLETRKTCKITVGQT 84
          MQ++ F L    YVELNQLLKL G+CDSGGAGK LVA GQVKVDG+ E RKTCKI  GQ 
Sbjct: 1  MQQLEFELNDE-YVELNQLLKLVGVCDSGGAGKVLVASGQVKVDGQTELRKTCKIRAGQV 59

Query: 85 VQLGDVRIRVLAGS 98
          V LGD+RI+V A +
Sbjct: 60 VALGDIRIKVRAAA 73


>ref|YP_001352249.1| hypothetical protein mma_0559 [Janthinobacterium sp. Marseille]
 gb|ABR91689.1| Uncharacterized conserved protein [Janthinobacterium sp.
          Marseille]
          Length = 73

 Score = 90.5 bits (223), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 49/74 (66%), Positives = 57/74 (77%), Gaps = 1/74 (1%)

Query: 25 MQKITFPLQGHPYVELNQLLKLCGLCDSGGAGKQLVADGQVKVDGKLETRKTCKITVGQT 84
          MQ++ F L    +VELNQLLKL G+CDSGGAGK LVA G+VKVDG+ E RKTCKI  GQ 
Sbjct: 1  MQQLEFELNDE-FVELNQLLKLVGICDSGGAGKVLVASGKVKVDGQTELRKTCKIRAGQV 59

Query: 85 VQLGDVRIRVLAGS 98
          V LGDVRI+V A +
Sbjct: 60 VALGDVRIKVRAAA 73


>ref|ZP_03270476.1| conserved hypothetical protein [Burkholderia sp. H160]
 gb|EDZ97939.1| conserved hypothetical protein [Burkholderia sp. H160]
          Length = 92

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 50/91 (54%), Positives = 58/91 (63%), Gaps = 7/91 (7%)

Query: 7  PYRSPVPPVADGVSERKHMQKITFPLQGHPYVELNQLLKLCGLCDSGGAGKQLVADGQVK 66
          P R PVP  A+       M  + F L G  YVEL+ LLK+ GL DSGG+ K +VADG V 
Sbjct: 9  PQRDPVPQGANA------MPNLNFTLTGE-YVELHNLLKITGLADSGGSAKMMVADGAVM 61

Query: 67 VDGKLETRKTCKITVGQTVQLGDVRIRVLAG 97
          VDG++ETRKTCKI  GQ V LGD RI V  G
Sbjct: 62 VDGRVETRKTCKIRAGQVVLLGDTRIAVHEG 92


>ref|YP_003846538.1| putative RNA-binding protein [Gallionella capsiferriformans ES-2]
 gb|ADL54774.1| putative RNA-binding protein [Gallionella capsiferriformans ES-2]
          Length = 73

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/72 (66%), Positives = 52/72 (72%), Gaps = 1/72 (1%)

Query: 25 MQKITFPLQGHPYVELNQLLKLCGLCDSGGAGKQLVADGQVKVDGKLETRKTCKITVGQT 84
          MQ I F L    YVELNQLLK+ GLCDSGGAGK LVA+G V VDG LE RKT KI  G  
Sbjct: 1  MQHIEFQLNSE-YVELNQLLKMVGLCDSGGAGKALVAEGVVSVDGLLELRKTAKIRAGSV 59

Query: 85 VQLGDVRIRVLA 96
          V LGDV+I V+A
Sbjct: 60 VTLGDVQISVVA 71